LOCUS       NM_001108650            1852 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus BLOC-1 related complex subunit 5 (Borcs5), mRNA.
ACCESSION   NM_001108650 XM_001069714 XM_342773
VERSION     NM_001108650.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Kang BW, Jeon HS, Chae YS, Lee SJ, Park JS, Choi GS and Kim JG.
  TITLE     Impact of Genetic Variation in MicroRNA-binding Site on
            Susceptibility to Colorectal Cancer
  JOURNAL   Anticancer Res 36 (7), 3353-3361 (2016)
   PUBMED   27354594
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Pu J, Schindler C, Jia R, Jarnik M, Backlund P and Bonifacino JS.
  TITLE     BORC, a multisubunit complex that regulates lysosome positioning
  JOURNAL   Dev Cell 33 (2), 176-188 (2015)
   PUBMED   25898167
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC160872.1.
            
            On Mar 16, 2008 this sequence version replaced NM_001108650.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160872.1, CO557761.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132279, SAMD00132283
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q43"
     gene            1..1852
                     /gene="Borcs5"
                     /gene_synonym="Loh12cr1"
                     /note="BLOC-1 related complex subunit 5"
                     /db_xref="GeneID:362452"
                     /db_xref="RGD:1307624"
     exon            1..74
                     /gene="Borcs5"
                     /gene_synonym="Loh12cr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..604
                     /gene="Borcs5"
                     /gene_synonym="Loh12cr1"
                     /note="loss of heterozygosity, 12, chromosomal region 1"
                     /codon_start=1
                     /product="BLOC-1-related complex subunit 5"
                     /protein_id="NP_001102120.1"
                     /db_xref="GeneID:362452"
                     /db_xref="RGD:1307624"
                     /translation="MGSEQSAEAESRPGDLNASVTPSPAKHRAKMDDIVVVAQGSQAS
                     RNVSNDPDVIKLQEIPTFQPLLKGLLSGQTSPTNARLEKLDSQQVLQLCLRYQDHLHQ
                     CAEAVAFDQNALVKRIKEMDLSVETLFCFMQERQKRYAKYAEQIQKVNEMSAILRRIQ
                     MGIDQTVPLMERLNSMLPEAERLEPFSMRPERERH"
     exon            75..218
                     /gene="Borcs5"
                     /gene_synonym="Loh12cr1"
                     /inference="alignment:Splign:2.1.0"
     exon            219..376
                     /gene="Borcs5"
                     /gene_synonym="Loh12cr1"
                     /inference="alignment:Splign:2.1.0"
     exon            377..1819
                     /gene="Borcs5"
                     /gene_synonym="Loh12cr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttgctgct ggcgccatgg gcagcgagca gagcgcggag gccgagagcc gccccggcga
       61 tctgaacgcc tcagtgactc catctccggc taaacatcgg gccaagatgg atgatatcgt
      121 ggtggtagct cagggctctc aggcctcaag gaatgtcagc aatgatcccg atgtcatcaa
      181 gctgcaagag attccaacct tccagcccct tttaaaaggg ctcttgagtg gacagacgtc
      241 cccaacaaac gcaaggctgg agaagctgga ctctcagcag gtgctgcagc tctgcctccg
      301 gtaccaagac cacctgcacc agtgcgcaga ggccgtcgct ttcgaccaga atgctctggt
      361 caagcgaatc aaagagatgg atctgtccgt ggaaaccctc ttttgcttca tgcaggagcg
      421 ccagaaaaga tacgccaaat acgctgaaca gatccagaag gtgaacgaga tgtcggccat
      481 cctgcgccgt atccagatgg gcatagacca gacggtgcca ctcatggaga ggctcaacag
      541 catgctgcca gaggccgagc gcctggagcc cttcagcatg aggcctgagc gggagcgcca
      601 ctagccggca cctgcccctc aggcgcagct cctccagcct tcaccctgcc cggatgatgg
      661 cctagatgtg tttgacccac atggacgttc ccatgagaac tgaagttggg acagttgaat
      721 tcctgggaat tctgtaagga actttgcatc aagagttatt tttattttgc tcagattttt
      781 tgaattaaaa gtgtagtcta gctactgcag tgacactgtg gagaaagtta aggagctgtt
      841 ctccttggcg cattggagac tgctcaggct ctctgatttg tgcttgtaca cataagctac
      901 ggttccaccc agcagcgcca tcacaccaag gaggtctgca ctgtcttcct gtcctgccag
      961 aacaccatct ttgtgttctt cccgtcccgc gccccttttg tgggtcactg gaaattgaag
     1021 actgccgtca cccactcatg aaggtgcttc ctgtcagcac ctgcttttcc acgcagagcc
     1081 caggcttctg tcagcctggc agaccttggc ttccataaca aggcttgcac tgacatttgc
     1141 tcccaccctc cagaggcagt cattctctca tgcagagacc ctctgagccc cactgatgtg
     1201 ccaggggcac taaagaggcc acgtctgtag ggcatgaagc tggggaaaga gctgctgccc
     1261 atcacaggag ttctgtggaa gaaaggcctg aggaaggaag agaggcagtg agtgcagggg
     1321 caggcctgaa gattagagct gggcctcagg gctgacaggt ctgcgagtct gcagcctcca
     1381 ccttcctccc tgtgctcctc cctgtgctcc tccctgtgct cctccctgtg ctcctccctg
     1441 tgctcctcac tgtactcctc actgtactcc tcactgtgct cctcactgta ctcctcactg
     1501 tgctcctccc tgtgctcctc actgtgctcc tccctgtgct cctccctgtg ctcctcactg
     1561 tgctcctcac ttcgctcctc cctgtgctcc tcactgtact cctccctgtg ctcctcacta
     1621 tactcctcac tgtgctcctc actgtgctcc tcactgtgct cctcactgtg ctcctccctg
     1681 tactcctcac tgtactcctc cctgtgctcc tccctgtgct cctccctgta ctcctcactg
     1741 tgctcctcag aatccagaga gtctgtcagg tgtcagaata gcctcggtgt ttttataaaa
     1801 ttaaagtgaa tctgattaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
