LOCUS       XM_006243370            5944 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BCL2 interacting protein 2 (Bnip2),
            transcript variant X1, mRNA.
ACCESSION   XM_006243370
VERSION     XM_006243370.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006243370.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006243370.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5944
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5944
                     /gene="Bnip2"
                     /note="BCL2 interacting protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 49 ESTs, 20 long SRA reads, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 239 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:300811"
                     /db_xref="RGD:1308944"
     CDS             279..1259
                     /gene="Bnip2"
                     /codon_start=1
                     /product="BCL2/adenovirus E1B 19 kDa protein-interacting
                     protein 2 isoform X1"
                     /protein_id="XP_006243432.1"
                     /db_xref="GeneID:300811"
                     /db_xref="RGD:1308944"
                     /translation="MEGVELKEEWQDEDFPIPLPEDDSIEADILDVTDPDRQPGSLEV
                     NGNKVRKKLVAPDISLTLDPGEDSLWSDDLDEGGEVDLDGLDTPSENSDEFEWEDDLP
                     KPKTTEVIRKGSITEYAATEEKEDGRRWRMFRIGEQDHRVDMKAIEPYKKVISHGGYY
                     GDGLNAIVVFAVCFMPESGQPNYRYLMDNLFKYVIGTLELLVAENYMIIYLNGATTRR
                     KMPSLGWLRRCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVF
                     NLAELAELVPMEYVGIPECIKQYEEEKFKKRQKRVDQELNGKQEPPKSEQ"
ORIGIN      
        1 ccggaggtgg tcacttccgc cgcggcgtgc tcactgaatc cgggtcagct gctgcctccg
       61 ggactgcagc tgagaccgtc cgggaaaagc tgggccccgt ctccacagcc gaccaagggc
      121 agcgggctct gcccggcgcc actttctgcg acctggccgt cagccccacg tcgccggcct
      181 ggaggggcaa agaggacgag ggggccgcgg cttcctccgg ggacctcggc tgcctggatt
      241 gccaggagct ggaagttgac attgagtcta ggctgaggat ggaaggtgtg gaactgaaag
      301 aagaatggca ggatgaagac ttcccaatac ctttaccaga agatgacagc attgaagcag
      361 atatactaga tgtaactgat ccagacagac agcctggctc gttagaagtt aatggaaaca
      421 aagtacggaa gaaactggtg gccccagaca tcagcctgac cttggatcct ggtgaagact
      481 ctctgtggtc agatgatttg gatgaaggtg gagaagttga cctggatggc ttagacaccc
      541 cctcagagaa cagtgatgag tttgagtggg aagatgatct tcccaaaccc aaaactactg
      601 aagtcattag gaaaggctca attactgaat atgcagctac agaagaaaag gaagatggac
      661 gccgctggcg catgttcagg attggagagc aggaccatag agtggacatg aaggcaatcg
      721 aaccctacaa aaaagttatt agccatggag gctattatgg ggatggctta aatgccattg
      781 ttgtatttgc tgtctgtttc atgcctgaga gtggtcagcc taactataga tatttgatgg
      841 acaatctctt taaatatgtt attggcactt tagagctgtt ggtagcagag aactacatga
      901 tcatttactt aaatggtgcg acaacgcgaa ggaaaatgcc cagtctggga tggctcagga
      961 gatgctacca gcaaatcgac agacgattaa ggaaaaacct aaagtctcta atcattgtgc
     1021 acccctcttg gtttatccga acacttctgg ctgttacaag accatttatc agttcaaaat
     1081 tcagtcagaa gattagatac gtctttaatt tggctgaact ggcggagctt gttcccatgg
     1141 agtacgtcgg cataccagag tgcatcaaac agtatgaaga agaaaagttt aaaaagagac
     1201 aaaaaagagt tgatcaagag cttaatggga aacaggaacc accaaagagt gagcagtaag
     1261 ttccgcatcc atcccggagg aggcagagca ccgggggcag ggctgtagtg catcctagtg
     1321 cactgctggc tcaagggttt atgtcatctg ttacaaaatt tacttgactt ctttccaaat
     1381 gaactcttgt acaagggact gttcactgct gtcatggttt gcaactgttg aatttagctc
     1441 tttaataact aattatattg taatcgtttt atattgctaa atagcaaaaa ctacacttta
     1501 tataaaacaa tttttacatt tgtttatttg aaatgatgca tcttcagtaa agtatttata
     1561 tacataaatg acaaaggaaa gaaataatat atatttttat gtttgggggc aatatttttt
     1621 agtgtgtacc tatctcgtgg atgaatatgt acaagtaaat aagaccacga ttttaagtgt
     1681 aaagtgcatg taagactttg tttttgtaaa tggttggata catttcctgg gtaacttagg
     1741 ctgggttgtc ctaaagcagg ggcaggtaaa ttgacgccaa gaagtaccta aggtcatgca
     1801 tgtggtctgg gcagtagcag cagcctgagc ttctcctcac ctgaaagcac gttgtatctt
     1861 aatgtggtgg aaaggcaggt gggtgaatga cttgttttcc tctctgaaga catgttggaa
     1921 ctagaactag agattttgaa aagctagtag ttagggttta ttatatattt gtatataagg
     1981 gacactgtac tttacccaaa gtcagaactg ttctaagaag aaagcaagct cttaagatgt
     2041 gttcagtcac gtgagctgag tggtgtcgtg tgtgtgaagc tgtgaggtgt gcagaggctt
     2101 cgatgagcat tcatggtcag ctgcatctgt agagcagatg gcgctatggc atgctctcac
     2161 agtggggcac tttaccagag tacgtcctcg ccggctgtcc gaccacagtg gtatttggcc
     2221 tcagcagatg ggcgttctcg ctgctgtcgg atggtgtgac agtgctgtcc atgggtcagt
     2281 tctgtaagtg ctgaggtgct actgctgtgc acccgggatg ccatttgctg tatgtaagcc
     2341 tttagctcat gtggttaagt accttgactg aacgttgaaa taaatattat ttgtgcctcc
     2401 aaccagggtc taaaagtcat tctaaaacaa cagatttgtc tagtcttgtg tcatggactt
     2461 gcctggtgta tgtatgttta gtgcactatc agcttcacga cccccagccc gtcatgtaaa
     2521 ttgtttacag aagtgatcca gcaaaataac attgaacagg cgtaaactaa gcttaggtta
     2581 tttcctccca cactgagcac atgaccttca ccattgcagt ttttagggtt aagcttctat
     2641 tgcaataggg aatttttctt tatttctttg tccttcttgg acataaattt gacctactag
     2701 attaaaacca gttatggtca agctggagga ctttgtggat aaaacatttc tccacaacct
     2761 cagcctagat ccaggactcg tgttgttgca gtgcattgag ccaaaaccat tttgcttgtg
     2821 ttgatgaagg aaactttgag aataactata taacaccagg catggtggca tgaatttaag
     2881 ggcagcctgg cctacatagc tgcatagaca accttctgaa cttacccaag agtcgcgagt
     2941 agcttgtaga tacagtggct tacagagcct ctcacctacc ttgtctcaga atggactgag
     3001 ctttgtcttt ggttttcttc cacattaaat actaagatca tcagtttcaa aatacagacg
     3061 atagcctcag ctttttactg tgttttactt tttgcagaaa tggttggttt ggggtttttt
     3121 gtttgttttg ggtcttttta aaaattaaaa gtagcctata ttcagttaga acatggagag
     3181 ctggctcaac agttgtaaga acacttccaa gtttagttcc cagcaccaat ggccagcagc
     3241 agctcacggc tgcctttaat tccagctcca ggggatttgc ttcagtctct ggcctctggg
     3301 catctgcata cacatgcaca catacacaga atcttttttt aaaaatgaat aaaattcaca
     3361 aggaacagct taatataata tataccttct tgcctaggga gtctgaaaca gaattctaag
     3421 ttggggccta tctgggctac atagcaagcc cttgactgaa gaagaaggag aacagtgctt
     3481 taactgcact tgaatgaatg tggtatagag atgtgcccac agtaaatgta aacatacctg
     3541 tacagctggt gataaatagt aggttagagg aaaagccata ttaagttgat atttaattgg
     3601 tacaatataa ctttttccca tgtcatattt taattttcat gattaactga gatgaaaatg
     3661 catagagtaa ttctttgact ttttttaatt cttttgactt tttttgcagg agtcttagct
     3721 aaatttgaca ggtttaattc aggtttaatt caggtttttg ttaccatctc tgttactttg
     3781 gctctgactg ccctcttttt atcaagtttt tcttagaaaa taatgtaact ctgttctgct
     3841 tgtgttcctg aaaaagcacc aagggaagct gtgaggtttc cacctcacat tgaagccttt
     3901 aaccaggggc aagaggggcc aggaagtgtg gtgctaagca gagttagaag ataagtgaga
     3961 aaatgggcca ttaaaaaggc ttggttatca cctacatgct ctcttaagga acgtactctg
     4021 tatagctgcc ggtggtttca tttcccattt ccatacagaa acagatgtaa ggcatggatt
     4081 gacgagggaa ctgctggtag ccctgggatg atactctcct gtcctttgca tcttcaggca
     4141 gaaacaggtc tgaacaatgg cgtagcagct acagtctcca tgtcaagacc aatcccaccc
     4201 ttcacagttg gtaacgttaa tgttggcttc tgtgctacct gtcatgactt aagtgtcacc
     4261 agctccttga cagtattctt ccagagaact tgtgtcatgt tcctgcagcc atgtatgtga
     4321 gtgctcaggg aacttgaaga gataatctca tgaagtgtgc tgggaattag cactgtgaca
     4381 catgtagcag agcaggccag tttcttgatg gaattggtag gtctctatga aaggtgacag
     4441 tagctttggc attctttgtc ccgtgtttta agtagagaat tgttgctgga agatagtggt
     4501 gcacactctt tatcccagca ctttggaggc agaggcaggc tgatctctga attctacaga
     4561 ctgagttcca agacagccag agaaaccctg tctcaaaatg tagaaaaatt gttaacactg
     4621 ttagagacac agatagttga caatagaggt agtcacccca ttctgctttg gttttgttct
     4681 gctgcctccc ctccctcccc tcacccctgt tttcctttgg tattttagac attgatcagt
     4741 catatctcag agggctggaa taagaaaaat ctatacacag gtgaacactt gtactagtga
     4801 gagtttactt tgtactagaa aatgggaatt gggtagtggg ccttgctaag accatcaaga
     4861 aactaggttt aagctgtgtt ctaagctggt acaaatgacc tgtcagagga cccctttacc
     4921 ttcagctccc cttctgagat cctaaattct gaattcagaa tcaggatggc agaagacagt
     4981 aatggagctt ttaagttctt aatggtaatt gaaacaaaac aggatgtgaa acagtaagag
     5041 gtaactttaa tttgaatagg gcagtttgtt gctattatat ataatatgta atggtgtgga
     5101 accaaattta aaatactttg agaaattcac atagaacatt ttaggatcaa gcaccaggtg
     5161 aaaaccaatc attttaggac ctaccatggt catgtacatg tgattccaac actggaggct
     5221 aaggcagaag gattaggagt tgggggccag tctggattac ttagcaagtt caggacaacc
     5281 taagcgggtg tacagagtga aacctgccct gggtttgggg gtggggtggg gtgggcgtga
     5341 tggtggagta acacattgca ttaaaattag ttttaaaatg ataaaagcta tttcagataa
     5401 ctgccttaaa tttcctacaa taattaaaac ttggaattcg aagtttttgt gtatttgtat
     5461 actccatcct accttcgtat atagacttcc aaaggttaat gtcctaacag ccgctacaat
     5521 gtttactcat gaaaacccag ctagtaaata ttggtgttca gggctgccag cttgcccagt
     5581 ccttggggtt ctgttcacat agaacacaat tcggagttga tcaaacactg ttgcactttg
     5641 cttcatactt caaaacaact ttcattagga gctcacatgc tgtcacttag acaaaattaa
     5701 ctcactgtga cctttttgct gttcttacat agtactgact ctagtgttgt catttcagtg
     5761 agaattcagt ctgtctgtct tcgggaaacg gctctagttc taggcagtga gaagcagctc
     5821 tttagcatcc gcaaagtgtg ctattttctc ttcctttgac ttgttcggaa tacagtggtg
     5881 tgtcctcatt tgttacacgt attaccataa tattaatgca tcttaataaa tcagttggaa
     5941 tata
//
