LOCUS       NM_001108916            4737 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus basonuclin zinc finger protein 1 (Bnc1), mRNA.
ACCESSION   NM_001108916 XM_001067692 XM_003748892 XM_017590513 XM_344917
VERSION     NM_001108916.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4737)
  AUTHORS   Zhang,D., Liu,Y., Zhang,Z., Lv,P., Liu,Y., Li,J., Wu,Y., Zhang,R.,
            Huang,Y., Xu,G., Qian,Y., Qian,Y., Chen,S., Xu,C., Shen,J., Zhu,L.,
            Chen,K., Zhu,B., Ye,X., Mao,Y., Bo,X., Zhou,C., Wang,T., Chen,D.,
            Yang,W., Tan,Y., Song,Y., Zhou,D., Sheng,J., Gao,H., Zhu,Y., Li,M.,
            Wu,L., He,L. and Huang,H.
  TITLE     Basonuclin 1 deficiency is a cause of primary ovarian insufficiency
  JOURNAL   Hum Mol Genet 27 (21), 3787-3800 (2018)
   PUBMED   30010909
REFERENCE   2  (bases 1 to 4737)
  AUTHORS   Zhang,X. and Tseng,H.
  TITLE     Basonuclin-null mutation impairs homeostasis and wound repair in
            mouse corneal epithelium
  JOURNAL   PLoS One 2 (10), e1087 (2007)
   PUBMED   17971852
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4737)
  AUTHORS   Ma,J., Zeng,F., Schultz,R.M. and Tseng,H.
  TITLE     Basonuclin: a novel mammalian maternal-effect gene
  JOURNAL   Development 133 (10), 2053-2062 (2006)
   PUBMED   16624857
REFERENCE   4  (bases 1 to 4737)
  AUTHORS   Weiner,L. and Green,H.
  TITLE     Basonuclin as a cell marker in the formation and cycling of the
            murine hair follicle
  JOURNAL   Differentiation 63 (5), 263-272 (1998)
   PUBMED   9810705
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Nov 27, 2020 this sequence version replaced
            XM_017590513.1, NM_001108916.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.2977.1,
                                           SRR26643290.2712.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               JAXUCZ010000001.1  145352433-145352534 c
            103-202             JAXUCZ010000001.1  145338703-145338802 c
            203-438             JAXUCZ010000001.1  145337502-145337737 c
            439-2294            JAXUCZ010000001.1  145333660-145335515 c
            2295-4737           JAXUCZ010000001.1  145326881-145329323 c
FEATURES             Location/Qualifiers
     source          1..4737
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..4737
                     /gene="Bnc1"
                     /note="basonuclin zinc finger protein 1"
                     /db_xref="GeneID:365299"
                     /db_xref="RGD:1309042"
     exon            1..102
                     /gene="Bnc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             7..2979
                     /gene="Bnc1"
                     /note="basonuclin 1"
                     /codon_start=1
                     /product="zinc finger protein basonuclin-1"
                     /protein_id="NP_001102386.1"
                     /db_xref="GeneID:365299"
                     /db_xref="RGD:1309042"
                     /translation="MRRSPSRGGRGAARAGYARREGRPRSGRRMAEAIGCTLNCSCQS
                     FKPGKINHRQCEQCRHGWVAHALSKLRIPPVYPTSQVEIVQSNVVFDISSLMLYGTQA
                     IPVRLKILLDRLFSVLKQDEVLQILHALDWTLQDYIRGYVLQDASGKVLDHWSIMTSE
                     EEVATLQQFLRFGETKSIVELMAIQEKEEQSIVIPPATANVDIRAFIESCGHRSANLP
                     TPVDKGNPSSMHPFENLISNMTFMLPFQFFNPLPPALIGSLPEQYVLEQGQDQSRDPK
                     QDLHGPFSDSGFLTSTPFQVEKEQCLSCPDAVTQKEDSAHLSDSSSYSIASKLERTQL
                     SPEAKMKPERNSLSAKKGRVFCTACEKTFYDKGTLKIHYNAVHLKIKHKCTIEGCNMV
                     FSSLRSRNRHSANPNPRLHMPMNRNNRDKDLRNSLNLASSETYKRPGFTVMSPDCGPL
                     PGYTGSVEDSKGQPAFSSIGQNGVLFPNLKTVQPVLPFYRSPATPAELANTPGMLPSL
                     PLISSSIPEQLVSTDVPFDALPKKKSRKSSMPIKIEKEAVEIADEKRHSLSSDDDVPL
                     QVVSEDEPEDSSPQSDRVPEEQRTQLGLEEPLPQGERACHLESVIEPHGAISRTLEQT
                     TLTERESEQKVALSSVMPREVEHDGHERHFTPGLGPQIPFPDYMELQQRLLAGGLFGA
                     LSNRGMAFPFLEESKELGHLSEHALVRQKEETRFQCDICKKTFKNACSMKTHEKSTHA
                     RETHACTVDGCGAAFLSRRSRDRHSSNLSLHQKVLNEEALETSEDHFRAAYLLQDVAK
                     EAYQDVAFTPQASQTSVIFKGTSGMGSLVYPISQVHSASLESYNSGPPSEGTILDLST
                     TSSMKSESSSHSSWDSDGVSEEGTALMEDSDGNCEGQSLVSAEDEYPICVLMEKADQS
                     LASLPSGLPITCHLCQKIYSNKGTFRAHYKTVHLRQLHKCKVPGCNTMFSSVRSRNRH
                     SQNPNLHKSLASSPGHLQ"
     exon            103..202
                     /gene="Bnc1"
                     /inference="alignment:Splign:2.1.0"
     exon            203..438
                     /gene="Bnc1"
                     /inference="alignment:Splign:2.1.0"
     exon            439..2294
                     /gene="Bnc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2295..4737
                     /gene="Bnc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgtggatgc ggcggtcgcc gagccggggc ggacgcggag cggcccgggc agggtacgcg
       61 cgccgggaag gccggccccg gagcggccgc aggatggctg aggctatcgg ctgtactctg
      121 aactgcagtt gccaaagctt caaacctggg aagataaacc accgccagtg tgaacagtgc
      181 aggcatggat gggtggctca tgctctaagt aagctgagga ttccccccgt gtatccgaca
      241 agccaagtgg aaattgtcca gtccaatgta gtgtttgata ttagcagcct tatgctctat
      301 ggaacccaag ctatccctgt tcgcctgaaa atcctactgg accggctctt cagtgtgctg
      361 aagcaagatg aggttctaca gatcctccat gccctggact ggacacttca ggattacatc
      421 cgtggatatg tgttacagga tgcctcaggg aaggtgttgg atcactggag catcatgacc
      481 agtgaggagg aagtggccac cttgcagcag ttccttcgtt ttggagagac caagtctata
      541 gttgagctca tggcaatcca agagaaagaa gagcagtcta tcgtcattcc acctgccaca
      601 gcaaacgtag acatcagggc tttcatcgag agctgcggcc acaggagtgc caacctcccc
      661 actccggtgg acaaaggaaa ccccagcagc atgcatcctt ttgagaacct tataagcaac
      721 atgacgttca tgttgccttt ccagttcttc aaccctctgc ctcctgctct gatagggtcg
      781 ctgcctgaac agtacgtgct ggagcagggt caggaccaaa gccgggaccc caagcaggac
      841 cttcatgggc ccttttctga cagtggcttc ttaacttcca ccccgtttca ggttgaaaag
      901 gaacagtgtc taagctgtcc agacgctgtc acccagaagg aagacagtgc ccacttaagt
      961 gactccagct cctacagcat tgccagtaag ctcgaaagga cacagctgtc ccctgaggcc
     1021 aaaatgaagc ctgagaggaa cagcctgagt gctaagaagg gccgggtgtt ctgcaccgca
     1081 tgcgagaaga cattctatga caaaggcact ctcaagatcc actacaacgc cgtccacctg
     1141 aagatcaagc ataagtgcac tatcgaaggg tgtaacatgg tgttcagctc cctgaggagc
     1201 cggaaccgac acagcgccaa ccccaaccct cgcctgcaca tgccaatgaa cagaaacaac
     1261 cgagacaaag atctcaggaa cagcctgaac ctggcaagct ccgagaccta caagcgccca
     1321 ggtttcacag tgatgtctcc agactgtggg cccctccctg gctacactgg ttcagtggag
     1381 gactccaaag gccaaccagc tttctcaagc attgggcaaa atggtgtgct tttccccaac
     1441 ctaaagactg tccagccagt ccttcctttc taccgcagtc cagctactcc cgcggaactg
     1501 gcaaacacac ccggcatgct gccttctctc cctctgatct cctcctcaat cccagaacag
     1561 ctggtttcca cagacgtgcc atttgatgct cttcccaaga agaagtcccg gaagtccagt
     1621 atgcccatca agatagagaa agaagctgtg gaaatagctg atgagaagag acacagtctc
     1681 agctcagatg atgacgtgcc cctgcaggta gtcagtgaag atgagccaga ggacagcagt
     1741 cctcagtcag acagagtgcc tgaggagcag cgtacacagc taggcttaga ggagcctctt
     1801 ccacagggag aaagagcctg ccatcttgaa tctgtgattg agccgcatgg agctatcagc
     1861 agaacccttg agcagaccac gctcactgag agggagtctg aacagaaggt cgcactgagt
     1921 tcagtgatgc caagagaggt ggagcatgat ggtcacgagc gacatttcac ccctggcctg
     1981 gggccccaaa tcccttttcc tgactatatg gaattgcagc agcgcctgct ggctggggga
     2041 ctctttggtg ctttgtccaa cagggggatg gcttttcctt ttctggaaga gtctaaagaa
     2101 ctgggacacc tgagtgaaca tgcactagtg aggcagaagg aagaaactcg ctttcagtgt
     2161 gacatttgca agaagacctt taaaaacgct tgcagcatga agacacacga gaagagtaca
     2221 catgccagag agacacatgc gtgcacggtg gacggctgcg gggctgcttt cctttccagg
     2281 aggagcagag acagacacag ctcgaaccta agcctccacc agaaagtatt gaatgaagaa
     2341 gcgttggaga ccagtgagga ccattttcgt gcagcttacc ttcttcaaga tgtggccaag
     2401 gaggcctatc aggatgtggc tttcacacca caagcctcac agacatctgt catcttcaag
     2461 ggaacaagcg gcatgggcag tctggtttac ccaatatccc aagttcacag tgccagcctg
     2521 gagagctaca actctgggcc ccctagcgag ggcaccatcc tggatttgag cactacctca
     2581 agtatgaagt cagagagcag cagtcattcc tcctgggact ctgacggggt gagcgaggaa
     2641 ggtaccgccc ttatggagga cagtgatggc aactgtgaag gacagagcct tgtctctgca
     2701 gaagatgagt accccatctg tgtcctgatg gagaaggccg accagagcct tgctagtctg
     2761 ccctctggtt tgccaataac ctgtcatctc tgccaaaaga tatacagtaa caaagggacc
     2821 ttcagagccc attacaaaac cgtgcacctc cgccagctcc ataagtgcaa agtaccaggc
     2881 tgcaacacga tgttttcatc tgtccgcagt agaaacagac acagtcagaa tcccaacctg
     2941 cacaagagcc tggcttcatc tccaggccac ctccagtaac aagccaaaga ctcttagaag
     3001 tgtttgacgt atttcaggaa taaagtaatc caaagaataa ggtagcagga ctgtttagta
     3061 ccatccctca aaagccaagc aaaagtgatt ccactgtacg gccttctaca gcaggatgag
     3121 cgtaagatac acctgtgaga agccggccct ggggtagcct ttcctattat ttctcttttc
     3181 ttagcccaca aggttttcca cagacacaag gaaaacacag aaagccagtt tccccagatt
     3241 tgtttacatt tttcctagga aacctccagg tctacagatt aacaggaggg agtagggggt
     3301 caggaaccag acccagtgag gcctgcagta tcaagggtat cagggaagaa gttccctgga
     3361 atacagcaca gtcaccatgg gcatgacacc agtcccaaaa atggcatttt caggtcctcc
     3421 cccgcccttt tggcagggtt aatccaaaac cgagacttgc gtctagggaa ttgacattca
     3481 gagagcatcc ctccaatggg agttgttaac cactcctcag tctcatggaa ctccagggag
     3541 ttctccagga agctaggtca cctcaaatcc gtttattgtc aaatcttgat ctgtaacgtg
     3601 cagttaaaaa gccagaggga gaatatttcc tgtacttcag aatagtggtc ttcagtttaa
     3661 tttaaagtta ttttgataat atttaacttg agtttatatt atgtaactat ttggtgcgag
     3721 tgcaaacgtg tccctgtcac ctctgaatct ctgttcggaa ttagaacaag tgacagctta
     3781 tgcttcagaa ccacagcctg tcttcaggtg gtgaactgca gagtctgttg acccattggg
     3841 gtgagtgtga atgtgattct gacgaagtca tttgtatata tccgccaagc tctttagaga
     3901 acatggttct tatagctgtt gtgtattttc aatatcactg gatccctcag gcttcacctg
     3961 ttggcaaaca taaaaggttt ggatgaactt tgaagtttat ttggtagaaa gtagagacct
     4021 tactgccttg ttctatgtct taatatttaa cttattccaa gatctgttct ccaccattaa
     4081 acatgtttgc catggtagaa aggatttgta atcagccctg ggaagtgaga atgtctcttg
     4141 gaattgagca tttacagtag tcaaagggct atctatgcag ctttaaaaga agttgatttc
     4201 atattcagag ttcaagttaa ctgtttgact catgttgact taatttaaaa atccttaaag
     4261 gaaattgacg gttataagag atattatccc cctggcttaa agatagagag agccaacaac
     4321 ctgttagcaa ttatttcaat ttaaaaaatt acttaaaagt catctctgct taaggagaga
     4381 tgtatctttc aagctttttt gttactgaga tgtttaacat tctagtttcc ccaaaatgga
     4441 aaattttgta tgcaaatgtt ttctatgatt taataaaaat atatggcata ccttttgttt
     4501 aaaaggcaaa tgtttataag agtggttttg tttatatgtc tgtattttct cgagtggatt
     4561 ttctcgaact tgtgatcctc ctgcctctgc ctccttcagc aagtcctact gccatgcacc
     4621 accacaatca gtggattttc tgatacatac aaacacagac acactgtgga cttgagagag
     4681 ctgaaagtcc acagatgaca agacttccta taccaatata gattgcaata aaaaggt
//
