LOCUS       NM_001100751            4271 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus BMS1 ribosome biogenesis factor (Bms1), mRNA.
ACCESSION   NM_001100751
VERSION     NM_001100751.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4271)
  AUTHORS   Sloan,K.E., Bohnsack,M.T., Schneider,C. and Watkins,N.J.
  TITLE     The roles of SSU processome components and surveillance factors in
            the initial processing of human ribosomal RNA
  JOURNAL   RNA 20 (4), 540-550 (2014)
   PUBMED   24550520
REFERENCE   2  (bases 1 to 4271)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 4271)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1 and BC166492.1.
            
            On Oct 10, 2014 this sequence version replaced NM_001100751.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.14038.1,
                                           SRR26643294.19421.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-91                JAXUCZ010000004.1  153267339-153267429 c
            92-300              JAXUCZ010000004.1  153264013-153264221 c
            301-491             JAXUCZ010000004.1  153262963-153263153 c
            492-571             JAXUCZ010000004.1  153261907-153261986 c
            572-760             JAXUCZ010000004.1  153260923-153261111 c
            761-903             JAXUCZ010000004.1  153260311-153260453 c
            904-1025            JAXUCZ010000004.1  153259322-153259443 c
            1026-1219           JAXUCZ010000004.1  153258844-153259037 c
            1220-1359           JAXUCZ010000004.1  153255622-153255761 c
            1360-2111           JAXUCZ010000004.1  153252763-153253514 c
            2112-2213           JAXUCZ010000004.1  153252456-153252557 c
            2214-2371           JAXUCZ010000004.1  153251306-153251463 c
            2372-2453           JAXUCZ010000004.1  153246833-153246914 c
            2454-2527           JAXUCZ010000004.1  153244848-153244921 c
            2528-2710           JAXUCZ010000004.1  153244172-153244354 c
            2711-2899           JAXUCZ010000004.1  153240909-153241097 c
            2900-3080           JAXUCZ010000004.1  153240650-153240830 c
            3081-3139           JAXUCZ010000004.1  153240423-153240481 c
            3140-3262           JAXUCZ010000004.1  153239313-153239435 c
            3263-4271           BC166492.1         1985-2993
FEATURES             Location/Qualifiers
     source          1..4271
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..4271
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /note="BMS1 ribosome biogenesis factor"
                     /db_xref="GeneID:362426"
                     /db_xref="RGD:1308043"
     exon            1..91
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            92..300
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..3973
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /note="BMS1-like, ribosome assembly protein; BMS1 homolog,
                     ribosome assembly protein"
                     /codon_start=1
                     /product="ribosome biogenesis protein BMS1 homolog"
                     /protein_id="NP_001094221.1"
                     /db_xref="GeneID:362426"
                     /db_xref="RGD:1308043"
                     /translation="MEATDHKKHRKKHSGPKAEKKKKRHLQDLQLGDEEDARKRNPKA
                     FAVQSAVRMARSFHRTQDLKTKRHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIRCL
                     IRNFTRQKLSEIRGPVTIVSGKKRRLTIIECGCDINVMIDLAKVADLVLMLIDASFGF
                     EMETFEFLNICQVHGFPKIMGVLTHLDSFKHNKQLKKTKKRLKHRFWTEVYPGAKLFY
                     LSGMVHGEYQNQEIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKC
                     DRKVSLYGYLRGAYLKTNSQIHMPGVGDFVASDVSFLPDPCALPEQQKKRCLNEKEKL
                     VYAPLSGVGGVLYDKDAVYVDLGGSHGFQTVEEAGPTHELVQSLISTHASIDAKMASS
                     RVTLFSDSRPLGSEDVDSQGLWMPKEEKQVDVETGRVRRKAVFGDTEEESGDDDSEGD
                     EDEMSDDDGMENGSSDDEVEEEEGAKSSSCKYTTVRGHKRPKLEEQEEDSEADLPAFA
                     DSDDDLERSSGGEEEAEEADESSADGASTGERDTGEASSVGGARGARPPAAHQWGPHP
                     DGQKPSPVRKAALTTSDSGHCTAEEAFPSEDESEESELSSEEEDSEHKEVGGTNPQQH
                     RGQKPESENVGDETSDIENLLKEEEDHKEENSSSVETSGALKWKEDLSRKAAEAFLRQ
                     QQAAPNLRKLIYGTVTEDNEDEDGDASEELGGLFRVSQPDKGCKHKADSLDCSRFHVE
                     APHDWDLEEVMNSIRDCFVTGKWEDDKDAAKLLAEDEELYGDFEDLETGDVHKGKPGL
                     DTQSEDIEEEEEVKEETGPAEEESAREKHLNKKRKLKELFDAEYDEGESTYFDDLKGE
                     MQRQAQLNQAEFEDQDDETRVQYEGFRPGMYVRIEIENIPCEFVQNFDPHYPIILGGL
                     GNSEGTVGYVQMRLKKHRWYKKILKSRDPVIFSVGWRRFQTIPLYYIEDHNGRQRLLK
                     YTPQHMHCGATFWGPITPQGTGFLAIQSVSGAMPEFRIAATGVVLDLDKSIKIVKKLK
                     LTGFPFKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASF
                     EDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTHQLRLAHGIKLK
                     PNKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPRDRQRPAVIREP
                     HERKVLALLDALSTIHGQKMKKAKEQRHLHNKEHVKMKQKEEEEKLRRQKDLRKKLFR
                     IQGQKEKRSQKSSLRGAEAT"
     exon            301..491
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            492..571
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            572..760
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            761..903
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1025
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1219
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1359
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..2111
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2112..2213
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2214..2371
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2372..2453
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2454..2527
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2528..2710
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2711..2899
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2900..3080
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            3081..3139
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            3140..3262
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            3263..3410
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            3411..3586
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            3587..3748
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
     exon            3749..4246
                     /gene="Bms1"
                     /gene_synonym="Bms1l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttccgttgt cgtgcttgcg tgcttgagcg gttgctgctg tgaacctgag tgctttcgcg
       61 agccccgtgg gtgccgtcag tcggattccc ggtgagactt atttgtagtt gataaatagc
      121 caccatggag gccacggatc acaagaaaca caggaagaag cacagtgggc ctaaagctga
      181 gaagaaaaag aaaaggcacc tgcaggatct acagcttgga gatgaggagg atgcccggaa
      241 gagaaacccc aaagcttttg ccgtgcagtc tgctgtgcgc atggcgcggt cctttcacag
      301 gactcaggac ctaaagacga aaaggcatca tattccagtg gttgaccgaa ctccactgga
      361 gcccccacca atagtggtag tggtgatggg ccctccaaaa gttggaaaga gtaccttgat
      421 acggtgcctg attcggaatt ttaccagaca gaagttgagt gagatcagag gccctgtgac
      481 aattgtgtca ggtaaaaagc gcagacttac cattattgag tgtgggtgtg acatcaacgt
      541 aatgattgac ctagctaaag tagcagatct ggtgctaatg cttatagatg ccagctttgg
      601 ctttgaaatg gagacatttg agtttctaaa catttgtcaa gtacatggct ttcctaaaat
      661 tatgggagtt ctcacccact tggactcctt caagcacaac aagcaactta agaagacaaa
      721 gaagcgctta aagcatagat tctggacaga agtctacccg ggtgccaagc tgttctacct
      781 ttctggaatg gttcatggag agtatcagaa ccaagagatt cacaacctgg gcagatttat
      841 cacagttatg aagtttcggc ctctcacatg gcaaacttct catccttaca tcctggcaga
      901 caggatggaa gatttgacaa accctgagga tatccgcaca aacatcaagt gtgaccggaa
      961 ggtgtctctt tatggttatt tacgaggagc ctacctgaag actaacagcc agatccacat
     1021 gccaggtgta ggagattttg tcgccagcga tgtcagtttt ctcccagacc cctgtgccct
     1081 tccggaacag caaaagaagc gctgtttgaa tgagaaggaa aagctggttt atgcacctct
     1141 ctctggggtt gggggtgtgc tctatgacaa agatgctgtc tatgttgacc tgggtggcag
     1201 ccatggcttc cagacagtgg aggaagcagg ccctacacat gaactggtcc agagcctcat
     1261 ctccacccat gccagtatcg atgctaagat ggcttcaagc agagtgacac ttttctctga
     1321 ctccagacct ctggggtcag aagacgtcga cagtcaaggg ctgtggatgc caaaggagga
     1381 aaagcaggtg gacgtggaaa cgggccgagt gcgtcggaaa gccgtttttg gagacacgga
     1441 agaagagtct ggagatgacg atagtgaagg agatgaagat gaaatgtcgg acgatgacgg
     1501 gatggaaaat ggctctagtg atgatgaggt ggaagaggaa gaaggtgcta aaagcagcag
     1561 ctgtaaatac acaactgtta ggggacacaa acgaccaaaa cttgaggagc aggaagaaga
     1621 cagtgaggca gatttgccgg cgtttgctga tagcgatgat gatcttgaga gaagctctgg
     1681 gggagaggag gaggcagagg aagcagatga aagcagtgct gacggtgcct ccacaggaga
     1741 gagggacact ggggaagcca gctctgttgg aggagctcgt ggggcaagac cgccagcagc
     1801 tcaccagtgg gggccccatc cggatggaca gaagccttcc ccagtgagaa aagcagccct
     1861 caccacttct gattctggtc actgtacagc cgaagaggca tttccatctg aagatgagtc
     1921 tgaggaatct gaactcagtt cagaggaaga agactcagaa cacaaagagg ttgggggaac
     1981 aaatcctcag cagcacagag gacagaaacc cgagtcagag aacgtgggtg atgagaccag
     2041 cgacattgaa aatttactca aagaggaaga agatcacaag gaggaaaata gcagctctgt
     2101 agaaacgtca ggtgccctca agtggaagga agacctctcc aggaaagcag cggaagcgtt
     2161 tctgaggcag cagcaagcag ctccgaatct tcgaaagctg atttatggga cagtgacaga
     2221 ggataatgaa gatgaggatg gcgatgcctc agaagagctc ggagggctgt tccgtgtcag
     2281 ccagccagat aaagggtgta agcacaaggc tgactctctc gactgctcca gatttcatgt
     2341 ggaggcacct catgattggg atttagagga ggttatgaac agcatcagag attgctttgt
     2401 gactgggaaa tgggaagatg ataaagatgc agccaagctc ttagcagaag acgaagagct
     2461 ctatggtgac tttgaagacc tagaaacggg ggacgtgcac aagggaaaac cgggcctgga
     2521 tactcagagt gaagacatag aagaagaaga ggaagtgaag gaagaaactg gcccagctga
     2581 ggaggagagt gctagggaaa agcatctgaa caagaagaga aagctgaagg agctgtttga
     2641 tgcagagtac gatgaaggag aaagcacgta ctttgatgat cttaagggtg agatgcagag
     2701 acaagcacag cttaaccagg ctgaatttga agatcaagat gatgaaacca gagttcagta
     2761 tgaagggttt cggcctggca tgtatgtccg gattgagatt gaaaacatcc cctgtgaatt
     2821 tgtgcagaac tttgacccac actacccgat tattctgggt ggtttgggca acagtgaggg
     2881 cactgtggga tatgtgcaga tgcgcctcaa gaaacatcgc tggtataaga aaatcctcaa
     2941 gtctcgagac ccagttattt tctctgtggg atggaggagg tttcagacta tcccactgta
     3001 ttatatcgaa gaccacaatg gaagacagag gcttctgaaa tacaccccgc agcacatgca
     3061 ttgtggagca actttttggg gtcctatcac cccacaagga actgggtttt tggcgataca
     3121 gtctgtcagt ggcgcaatgc ctgagtttcg gatcgctgcc actggagttg tccttgatct
     3181 ggataaatcc ataaaaatcg tgaaaaaatt aaagctaact ggttttcctt ttaaaatatt
     3241 caagaatact tcatttatta agggaatgtt taattctgcg ttggaagtag ccaaatttga
     3301 aggtgctgtc attcgaactg tcagtggaat aaggggacag atcaagaaag cactccgggc
     3361 tccagaaggg gccttccgcg ctagctttga ggacaagttg ctaatgagtg atattgtttt
     3421 catgcgaact tggtatcctg tctccattcc ggccttctat aatccagtaa catctttgtt
     3481 gaagccagtg ggtgagaaag acacctggtc aggaatgcgg acaacgcatc agctgaggct
     3541 tgcccatgga atcaaattaa agccaaacaa ggattcattg tataagccaa tcctgaggca
     3601 aaagaaacat tttaattcac tgcacattcc caaagccttg cagaaggctc tgccatttaa
     3661 gaataaaccc aagacccaag caaaggctgg caaagtgcca agggacaggc agagaccggc
     3721 ggtcatacgt gaacctcatg agaggaaggt cttggctctg ctagatgctc tgagcacaat
     3781 acacggtcag aaaatgaaga aggccaaaga gcagagacac ctgcacaaca aggagcatgt
     3841 gaagatgaag cagaaggagg aggaggagaa gctgaggcgg cagaaggacc tgaggaagaa
     3901 gctcttccgg atccagggtc agaaggaaaa acgaagtcag aagtctagtc taagaggagc
     3961 cgaggccacc tgaagtatct ccagagtgga ggggtgtctt ccagagctgc agccgtggtg
     4021 gcttcagtgt ctgtgacagt catgatgaga gcccgtggag actctgggat gtgtggtcca
     4081 gctgagcctg gagcagcata gaaagactgc atccccgctc gttcacagca tccagtgagt
     4141 caggggtcac ggatgggaaa cttagggctt tgtgaattaa ctcattgctt attcctgtct
     4201 tggtttattt tgtgctataa aaatattaaa ctatttttcc attttcaaaa aaaaaaaaaa
     4261 aaaaaaaaaa a
//
