LOCUS       XM_039095806            3265 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BMI1 proto-oncogene, polycomb ring
            finger (Bmi1), transcript variant X2, mRNA.
ACCESSION   XM_039095806
VERSION     XM_039095806.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095806.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3265
                     /gene="Bmi1"
                     /gene_synonym="Pcgf4"
                     /note="BMI1 proto-oncogene, polycomb ring finger; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 58 ESTs, 3 long SRA reads, 15 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 60 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:307151"
                     /db_xref="RGD:1307403"
     CDS             152..1126
                     /gene="Bmi1"
                     /gene_synonym="Pcgf4"
                     /codon_start=1
                     /product="polycomb complex protein BMI-1 isoform X1"
                     /protein_id="XP_038951734.1"
                     /db_xref="GeneID:307151"
                     /db_xref="RGD:1307403"
                     /translation="MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIV
                     RYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHP
                     SADAANGSNEDRGEVADEDRRVIADDEIISLSIEFFHPSRSDRKVTKEKPKEEVNDKR
                     YLRCPAALTVMHLRKFLRSKMDIPNTFQIDVMYEEEPLKDYYTLMDIAYIYTWRRNGP
                     LPLKYRVRPTCKRMKMSQQRDGLTAAGELESDSGSDKANSPAGGAPSTSSCLPSPSTP
                     VQSPHPQFPHISSTMNGTSNSPSGNHQSSFASRPRKSSVNGSSATSSG"
ORIGIN      
        1 gccgccccag gttttagttc cccgctcccc cgagcgcccc ccggcaccct cgcgccgcac
       61 atggtccccg agagcggcac ttgtgtctcc agcctgcgcg gctcccgcgg ccgctgcgcc
      121 ctttgttgag agggtctttt atcaagcaga aatgcatcga acaaccagaa tcaagatcac
      181 tgagctaaat ccccacctaa tgtgtgtcct gtgtggaggg tacttcattg atgccactac
      241 cataatagaa tgtctacatt ccttctgtaa aacatgtatt gtgcgttact tggagaccag
      301 caagtattgt cctatttgtg atgtccaagt tcacaaaact cgaccactac tgaatataag
      361 gtcagacaaa actcttcaag atattgtata caaattagtt ccagggcttt tcaaaaatga
      421 gatgaagagg agaagagact tctatgcagc tcacccttca gcagatgctg ccaatggctc
      481 caatgaagac agaggagaag ttgcagatga ggaccggcgg gtcatagctg acgatgagat
      541 tataagcttg tctatcgagt tcttccaccc aagcaggtcg gatcggaaag taactaaaga
      601 gaagccaaag gaggaggtga atgataaaag gtacttgcga tgcccagcag cactgacggt
      661 gatgcacttg agaaagttcc tcaggagtaa aatggacata cctaatactt tccagattga
      721 cgttatgtat gaagaggagc ctttaaagga ctactacacg ctcatggaca ttgcctacat
      781 ttacacctgg agacggaatg gcccactgcc tttgaaatac cgagttcggc caacttgcaa
      841 aagaatgaag atgagtcagc agagagatgg actgaccgcg gctggagagc tggagagtga
      901 ctctgggagc gacaaggcca acagcccagc gggaggtgct ccctccacct cttcctgctt
      961 gcccagcccc agcactccag tgcagtctcc tcacccacag ttccctcaca tttccagtac
     1021 catgaatgga accagcaaca gccccagcgg taatcaccaa tcttcctttg ccagtagacc
     1081 tcggaaatca tcagtaaatg ggtcatcagc aacttcgtct ggttaagaac taaggggaag
     1141 attcttcacc ccgtttgaga taccttcatc cattacagct tagagatgct aatacatgtg
     1201 actgtcgtcc agtttgcttc ctttgtagtg acattcaatt tggctgtaaa agatggacta
     1261 gatgggatac tttatatgga tgttaagtga aaagaaagag tctctaaaga attggattct
     1321 gagaaggcgg gcaaggtttt ttctgttagg aaagatgtga aatggttact gtgaccgctg
     1381 tctggaactg gaggtgttct gcagtgggta gacagtgggc catcctttgt tactctccgc
     1441 tgacgcccat attacattct cttcggttgt tcttgttgtt atgctgtttg gtgaccctgt
     1501 agaaaacaag tgcttttatc tccaagttca gcaaatggaa agaataggca tagaatgctg
     1561 cattctatgt acccatgtca ctgtgaataa caatttcttg catatttagc cattctaatt
     1621 cctgtttgat ttttacttct ctgttgctac gcaaaatgat caaaggaaac ttgttttaca
     1681 atctgtatgc ctaaaaaagc gggtactagc gtttattttc ctgacttgtt taaatgattc
     1741 gcttttgtaa gaatcaggtg gcattatgct tattgtacaa tgccatattg gtatatgaca
     1801 taacaggaaa cagtattgta tgatatattt ataaatacta tgaaaatatt gtgtttcata
     1861 cattcaaaaa cagttgtaaa cttctctaaa tgggttcgac ctttgcagat acacagtgca
     1921 ccctatgctg aggcttgaca ccagcacaga attgttttaa tgttgatggc tagtttcaga
     1981 gtcttttcca ctgagaagca aatggcagat cttcatagct ctggcttttc tccaataaga
     2041 ctttcagaat taatgttgca gtaaggaaaa attttaacca aggcaaatgg aaactgtttt
     2101 aattttcaat tggttaaaat agaactaatg tgtctttaaa tactatttat cagtggactt
     2161 ctaaaataga ttttaaagcc agccagttag ttgctgaagt aaaacatttt atctacaact
     2221 ttattttagt gtgtgtggca caatagtaat ttcaaattta agagttgttt tcatagttaa
     2281 aggaatctgc cttctctgta atatctggaa atagaagcaa tttactatga gtttctacag
     2341 gtatttttaa atagagcaaa catgttgagt ttaaaatatg aatgacccta ccaagtctca
     2401 gtttgctttg gtcgaactta gcgtgtgttt atcagccacc agttatctgt gaggacgttt
     2461 cttccatatg aatcgtttca tgtttgtatg gaccctgtag ctaagcattt catggtctac
     2521 agtctgcaaa agaagcacaa ttctattgct ttgtcttgct catagccatt aaatcattac
     2581 ttttacatat attgctgtta cttctgcttt ctttaaagat ttagtaaatg ttttatgaag
     2641 ccacaaaata catatatttt tattttgacc taaatttgta cagtcccatt gtgtgtgtgt
     2701 catttctaat tatagatgta aaattgaatt tcatttttaa ttgggaaaat tcaataaaag
     2761 gatattcatt tagaaaatag ctatgatctt taattaaaat tctgctatga aaagcacaat
     2821 gtgcagaagt tttgggaacc ctgtagactg taagagctaa aacctaagga gaatagttgt
     2881 tgtcaaatga tgttgtcagt aattgctttg ttgtacattg cttggaagcc caatgaaagg
     2941 agtatctgtt tatttacaat ctttgaagca aaagttacca atgtttacca attttggtga
     3001 atttaactca tttttctaga cttttctcga ggttttcaca gcgttatcta agacaaaaga
     3061 catctcaccc tctatgatgg acttacttct gagtgctttt gttaaagcct cagaggctta
     3121 ctaagcagtg tgtcaccata cttgaaaaca tttccattta ttgtatctgg gaggaggctt
     3181 tttaccctta ctcaatttga aaattgctta agcttaaagg atatttcagt caaaatttgt
     3241 cttttaataa aacaacagaa agata
//
