LOCUS       XM_039101056            4794 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BLM RecQ like helicase (Blm),
            transcript variant X1, mRNA.
ACCESSION   XM_039101056
VERSION     XM_039101056.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101056.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4794
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4794
                     /gene="Blm"
                     /note="BLM RecQ like helicase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:308755"
                     /db_xref="RGD:1308810"
     CDS             343..4608
                     /gene="Blm"
                     /codon_start=1
                     /product="recQ-like DNA helicase BLM isoform X1"
                     /protein_id="XP_038956984.1"
                     /db_xref="GeneID:308755"
                     /db_xref="RGD:1308810"
                     /translation="MFGSPVGWIMAAVPLNNLQEQLQRHSARKLKNQFSISKPKPSGF
                     TFKKKTPEGDVSVVRTPVLSDKDVNMSEALSYTEPPLHKPKQQSNIDGFFKNSPGGQQ
                     SKETCSELSLPEVVQIPQDASCTTPKTPAVKKPHVAIFKKLEFSSSADSLSDWADIDD
                     FDVPASDAFVSLTRNPTTRVSTAKKLSSSKRNFFKPPPRASAVKADLTPSSPECLQVD
                     LTKEQEEEADCLSRDVICIDTDPASEELLEKDVQEGLSLDARLGTERVDSAKKSHEDK
                     AAFQSPQNALYFEHNDNDYDIDFVPPSPEEIISTASSSLKCSSMLKDLDDSDKEKDIL
                     STSKDLSKPEEMTTPKSDLGTNEDCDAQQTSLQQQLIRVMEHICKLVDTVPIDELKAL
                     TCGDKLLQQRDIRRKLLAEAGFNRNDVNLLGSLWRHRPDSLDNTVQCDSCPVGHPGKE
                     LNSPYLPSHSLSTEECLPTTASGKTGFSATPKSLSERPPLNSHLQKSFVSSNWAETPR
                     TESRTESTYFPGSVLTSTTVKDESKHVASGRDIEREVQASYDIDNFNIDDFDDDDDDD
                     WENIMHNFSVSKSSTAAYPPIKEGGPVKSLSERISSAKAKFLPVASTAQNKNLSESIQ
                     NCSDKFAQNLSSKNPKHEHFQSLNFPHTKEMMKIFRKKFGLHNFRTNQLEAINAALLG
                     EDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGD
                     KTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAH
                     CVSQWGHDFRQDYKRMNMLRQRFPSVPVMALTATANPRVQKDILTQLKILRPQVFSMS
                     FNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYDSGIIYCLSRKECDTMADTLQREGLA
                     ALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMGIDKPDVRFVVHASLPKSVEG
                     YYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGNYHTRETHVNNLYSMVHYC
                     ENITECRRIQLLAYFGEKGFNPDFCKKHPDVSCDNCCKTKDYKTKDVTDDVKNIVRFV
                     QEHSSSPGTRNIGPAGRFTLNMLVDIFLGSKSAKVQSGIFGKGSAYSRHNAERLFKKL
                     ILDKILDEDLYINANDQPIAYVMLGTKAHSVLSGHLKVDFMETENSSSVKKQKAAVAH
                     VSQRDEAVMKCLGELADVCKLLGKVFGVHYFNIFNTATLKKLAESLSSDPEVLLQIDG
                     VTEDKLEKYGAEIIPVLQKYAEWTLPAEGGSPGSRGSRRSTPEETEEEEAVSSHYFAN
                     QTRNERKRKKVSASQKPKRRRTSYGGGFRAKGYEWSLCLYSIRGSTTCRKPSSKSKFS
                     GVTGSRSASCASQATSAASRKLGIMAPPKPVNRPFLRPAYAFS"
ORIGIN      
        1 taatccttct tgcggcgcga agcgtacggc gcggggcgca ggagggccga gtccccgcgc
       61 ggaatttgga ttgtggttta ccccggcgcg gcgtgatcct gggtgagtag gaagatccac
      121 ttttgatctg gaattttgag atgggaagat acaatttaaa ttgggaccaa actgtttgct
      181 agcagcctgt aaaggacatg gactaaggaa gcttttgctc tttacctgct tggtctcgct
      241 ggcaagtcca tcccttcact ggcattagag actacttctt cagggtccag tgtgcactga
      301 agacatccag acagacagcc tcgtgggctg gacaacgact ggatgtttgg atctcccgtt
      361 ggttggatca tggctgctgt tcctctgaac aatctacaag aacaactaca gcgtcactcg
      421 gccagaaaac ttaaaaatca gttcagcatt tccaaaccaa aaccttcagg ttttactttt
      481 aaaaagaaaa caccagaggg tgatgtgtct gtggtaagaa cacctgtgtt aagcgataaa
      541 gatgtgaata tgtctgaggc cttgtcatat actgagcctc cactccacaa accaaagcag
      601 cagtcaaaca tcgatggctt ctttaaaaat tcccctggag ggcagcaaag caaggagacc
      661 tgctccgaac tgtccctgcc ggaggtggta cagattcctc aggacgcttc ttgtactacc
      721 ccaaaaaccc cagctgtgaa gaaaccccac gtggccattt tcaaaaaact ggaatttagt
      781 tcttcggcag actctctcag tgattgggct gatatagatg actttgatgt gccagcatca
      841 gacgcatttg tttccctgac cagaaaccct actacaagag tgagcactgc taagaaactg
      901 agtagcagta agagaaactt ctttaaacca ccacctagag caagtgcagt aaaggccgac
      961 ttgactcctt cctcccccga atgcctgcaa gtggatttaa cgaaggaaca ggaggaagag
     1021 gcggactgcc tgagcaggga tgtgatctgc attgacactg accctgcttc tgaggagctc
     1081 ttggagaagg atgtgcagga aggcctgtca ttggacgctc gcttggggac tgaaagagtt
     1141 gacagtgcaa agaagagcca tgaagacaag gctgcattcc agtcacctca gaacgctctg
     1201 tactttgaac acaatgacaa tgattatgat atagattttg ttccaccttc tccagaagaa
     1261 atcatttcca ctgcttcttc ctcgttgaaa tgttccagta tgctaaagga tctcgatgac
     1321 tctgacaaag agaaggacat tctgagtacc tcaaaagatc tgtcaaaacc agaggaaatg
     1381 accacaccga agtctgatct gggaaccaat gaagactgtg atgcccagca gactagcttg
     1441 cagcagcagc ttatccgtgt gatggagcac atctgtaaat tagttgatac tgttcctatt
     1501 gatgaactga aagctctgac ttgtggggac aaactgcttc agcagcgaga cataagaagg
     1561 aagctccttg ctgaagcagg ttttaataga aacgatgtca atcttctggg ttctttgtgg
     1621 aggcacaggc cagattcgct tgataacact gtgcagtgtg actcctgtcc tgtggggcat
     1681 cctggtaaag agttaaactc tccatacctt ccctcacact ccctctccac tgaggaatgc
     1741 ttacccacca ctgcttcagg aaagacagga ttctcagcca ccccgaagag tctctctgaa
     1801 aggccaccat tgaattccca cttacagaag tcctttgtaa gtagcaactg ggctgaaaca
     1861 ccaaggacag aaagcaggac ggaaagcact tacttcccag ggagtgttct cacaagcacc
     1921 actgtgaagg atgagagtaa acatgttgct tcaggacgtg acatagagag agaagtccag
     1981 gcttcctacg atattgataa ttttaacatt gatgactttg atgatgatga tgatgatgac
     2041 tgggaaaaca taatgcacaa tttttcagtc agcaaatctt ccacagctgc ctacccacct
     2101 atcaaggaag gtggcccagt taaatctcta tcagaaagga tttcttcagc caaggcaaag
     2161 tttcttccag tggcatcaac cgctcaaaat aaaaacctct cagagtcaat tcagaattgc
     2221 tctgataagt ttgcacaaaa tctatcatca aaaaatccaa aacatgaaca ttttcaaagt
     2281 cttaattttc ctcatacaaa agaaatgatg aagattttcc gtaagaaatt tggcttgcat
     2341 aattttagaa ctaatcagct agaggcgatc aatgctgcgc tgcttggtga agactgcttt
     2401 atcctgatgc ccactggagg tggtaaaagt ttgtgctacc agctccctgc ctgtgtttct
     2461 cctggagtca ctattgtcat ttctcccttg agatcactaa tagtggacca agtccaaaag
     2521 ctgacttcct ttgatattcc agctacgtac ctgacagggg ataagactga ctccgaagct
     2581 gcaaacattt acctccagtt gtcaaagaaa gacccgatca tcaagcttct gtatgtcacc
     2641 ccagagaagg tctgtgcaag taacaggctg atttccactc tggagaatct gtatgagcga
     2701 aagctcttgg cacgatttgt cattgatgaa gcacactgtg tgagtcagtg gggccatgat
     2761 ttccgtcaag attacaaaag gatgaatatg cttcgccaga ggttcccttc tgtcccagtg
     2821 atggctctca cggccacagc gaaccccagg gtacagaagg acatcctcac gcagctgaag
     2881 attctcaggc ctcaggtgtt tagcatgagc tttaacagac acaatctgaa atactatgta
     2941 ttaccaaaga agcccaagaa agtggcactt gattgcctag agtggatcag aaagcatcac
     3001 ccttatgact cggggataat ttattgcctc tccaggaagg aatgtgacac aatggccgac
     3061 accttacaga gagaaggtct tgctgctctg gcttaccatg caggtcttag tgattctgcc
     3121 agagatgagg tgcagcacaa gtggatcaac caggacaact gccaggttat ctgtgcaacc
     3181 attgcatttg gaatgggaat cgacaaacct gacgtgcgat ttgtggttca tgcatctctt
     3241 cctaaatctg tggagggtta ttaccaagaa tccggccgag ctgggagaga cggggaaata
     3301 tctcactgcg tgcttttcta tacctatcat gacgtgacca gactgaagag acttataatg
     3361 atggaaaaag atggaaacta tcatacaagg gaaactcacg tcaataattt atatagcatg
     3421 gtacattact gcgaaaacat aacagaatgc agaagaatac agcttttagc ttactttggt
     3481 gaaaaaggat ttaaccctga tttttgtaag aaacatccag atgtttcttg tgacaattgc
     3541 tgtaaaacaa aggattataa aacaaaagat gtgactgatg atgtgaaaaa tattgtaaga
     3601 tttgttcaag aacacagttc atcaccagga acaagaaata taggacctgc tggaagattt
     3661 actctgaaca tgctagtcga cattttcttg ggaagtaaga gtgcaaaagt tcagtctgga
     3721 atatttggaa aggggtctgc atattcacgc cacaatgctg aaagactttt taaaaagctg
     3781 attctagaca aaatcttgga tgaagactta tatatcaatg ccaatgacca accaattgcc
     3841 tatgtgatgc tcggaacaaa agcccacagt gtgctgagcg gccacttgaa ggtggacttc
     3901 atggaaacgg aaaattcgag cagtgttaaa aaacaaaaag ccgcagtggc ccacgtgtcc
     3961 cagagagacg aggcagttat gaagtgtctg ggagaacttg cagacgtctg caaattgctg
     4021 ggcaaagtct ttggtgtcca ttacttcaat attttcaata cagccaccct caaaaagctt
     4081 gcagaatctt tatcttctga tcctgaggtt ttgcttcaga ttgatggtgt tactgaagac
     4141 aagctggaga aatatggtgc agaaataatt ccagtattac agaagtacgc agagtggaca
     4201 ttgccagctg aaggtgggtc cccaggcagc agaggctcta ggaggagcac cccagaggag
     4261 acggaggagg aggaagctgt atcttctcac tactttgcaa atcaaactag aaatgaaaga
     4321 aagaggaaga aagtgtcagc ctcccaaaag cccaagagaa gaagaactag ttacggcggc
     4381 ggcttcagag caaaggggta tgaatggtct ttatgtcttt acagcatcag gggctctact
     4441 acatgcagaa aaccatcttc taaaagtaaa ttctctggtg taactggatc ccgctcagcc
     4501 tcgtgtgctt ctcaggcaac atcagcagcc agtagaaaac tggggattat ggctcctcca
     4561 aagcctgtaa atagaccgtt cctcaggcct gcgtatgcct tctcctaaca gttcccagcg
     4621 tatagctctt gtttgtcggc atcggaccat ctgtggatag aaagctgtta gtctcgttac
     4681 aacatttgaa gttttcactt ctatctatta atatttaaat gtatctcatg tgatagttct
     4741 tatttttaaa taaacatttt ctttgctgct actgcaaatg tagtggccac tgtt
//
