LOCUS       NM_001305447            3295 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus basic, immunoglobulin-like variable motif
            containing (Bivm), mRNA.
ACCESSION   NM_001305447 XM_006226813 XM_006244873
VERSION     NM_001305447.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Pieragostino,D., Agnifili,L., Fasanella,V., D'Aguanno,S.,
            Mastropasqua,R., Di Ilio,C., Sacchetta,P., Urbani,A. and Del
            Boccio,P.
  TITLE     Shotgun proteomics reveals specific modulated protein patterns in
            tears of patients with primary open angle glaucoma naive to therapy
  JOURNAL   Mol Biosyst 9 (6), 1108-1116 (2013)
   PUBMED   23580065
REFERENCE   2  (bases 1 to 3295)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Mar 13, 2015 this sequence version replaced
            XM_006244873.1, XM_006226813.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.437175.1,
                                           SRR26643429.33555.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-325               JAXUCZ010000009.1  53761805-53762129
            326-919             JAXUCZ010000009.1  53768478-53769071
            920-1046            JAXUCZ010000009.1  53774450-53774576
            1047-1142           JAXUCZ010000009.1  53775540-53775635
            1143-1247           JAXUCZ010000009.1  53776124-53776228
            1248-1342           JAXUCZ010000009.1  53776447-53776541
            1343-1475           JAXUCZ010000009.1  53781305-53781437
            1476-1562           JAXUCZ010000009.1  53782872-53782958
            1563-1659           JAXUCZ010000009.1  53794444-53794540
            1660-3295           JAXUCZ010000009.1  53795490-53797125
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q22"
     gene            1..3295
                     /gene="Bivm"
                     /note="basic, immunoglobulin-like variable motif
                     containing"
                     /db_xref="GeneID:102548228"
                     /db_xref="RGD:1311888"
     exon            1..325
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            326..919
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     CDS             445..1953
                     /gene="Bivm"
                     /note="rCG22223-like"
                     /codon_start=1
                     /product="basic immunoglobulin-like variable
                     motif-containing protein"
                     /protein_id="NP_001292376.1"
                     /db_xref="GeneID:102548228"
                     /db_xref="RGD:1311888"
                     /translation="MPNITEAGKATDSGRDEYRSENKSPEENLQGALPSFYANASGTP
                     VGPRGDGHYPSSCPVTHTREKVYAICSDYAFLNQATSVYKTPSPARSACLPDNTSLSA
                     GNSTRYIGIPTSTSEIIYNEDNNLENLPTSMGKLPLAWEIDKSEFDGVTTNLKHKSGN
                     AKKQISKKKTSDKKGRYQRECLHYSPLDDVKQRKVLDLRRWYCISRPQYKTSCGISSL
                     ISCWNFLYSIMGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDH
                     FHVKGCSYVLYKPHGKNKTAGETAPGALSKLTQGLKDESLAYIYHCQNHYFCPIGFEA
                     TPVKANKAFSKGPLSPQEVEYWILIGESSRKHPAIHCKRWADIVTDLNTQNPEFLDIR
                     HLERGLQFRKTKKVGGNLHCIIAFQRLSWQRFGFWNFPFGTITQESQPPTHVLGIAKS
                     ESEDNISKKQYGRLGRSFSASFHQDSAWKKVSGIHERRNSGYHSYRDYNGND"
     exon            920..1046
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1142
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1247
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            1248..1342
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1475
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1562
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            1563..1659
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
     exon            1660..3295
                     /gene="Bivm"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaccttttc ttccggctgg gagtgaggga gcaggccggg aggaggttag taggctttcg
       61 gtctggcctt ggcctgtggg gactggggca cctgtctctg tgttggccaa cgcgggacag
      121 gagtgggaga gtgggaacct ggcacagtag cactgctgca gttgcactcg cgacgcccct
      181 gctcttccgg ttctccgcct gcaccgttgt caccttcagg tggcttccga gtctcaaaga
      241 gggggcagtg ggaagaagtc tcctggctcc ttagagcctg aactccaaga gggcaccatg
      301 tgctgcatga atcctgtact tgcaggatcc catttgtcaa ctctcaagct tttatagaat
      361 gctgtgaatg tttgccaaag ttgtttttta aaagacaggg ttgcggcttc ttcctaggaa
      421 cagagacgtc tgcatttgct ctcaatgcct aacatcactg aagctggaaa agccaccgat
      481 tctggacgcg atgagtacag atctgagaac aagtccccag aagagaatct acaaggtgct
      541 ttaccatctt tctacgcaaa tgcctcagga acacctgtgg gccccagagg agatgggcat
      601 tatccttcga gttgtccagt gactcatact cgagagaaag tttatgccat ctgctcagac
      661 tatgccttcc tcaaccaggc aacctcagtc tacaaaactc ctagcccagc ccgctctgct
      721 tgcctccccg ataacacctc gctttctgct ggaaatagta caagatatat tggaatccca
      781 actagtacat cagaaataat ctataatgaa gacaataact tggaaaactt acccaccagt
      841 atgggcaagc tgcctctggc atgggaaatc gacaaatctg aatttgatgg ggtgactaca
      901 aatttgaaac ataaatcagg caatgcaaag aaacaaattt ccaagaagaa aacatcagat
      961 aaaaaagggc ggtatcagag ggagtgtctc cactattctc ctcttgatga tgttaaacag
     1021 cgcaaagtat tagaccttag gcgatggtac tgcataagcc gaccacaata caagacttcg
     1081 tgtggtatct cctcattgat ttcttgttgg aatttcctat acagcataat gggagctggg
     1141 aatctcccac ctattaccca agaagaagca ttacatattt tgggcttcca acccccattt
     1201 gaagatatta ggtttggccc tttcactgga aatacaacac tcatgagatg gtttagacag
     1261 attaatgacc actttcatgt gaaaggatgc tcttatgttc tctataagcc ccatgggaag
     1321 aacaaaacag ctggagaaac tgctcctggg gccttatcaa agttgaccca aggattgaaa
     1381 gatgagtcac tggcttatat ctatcattgc caaaatcatt acttttgtcc aattggcttt
     1441 gaagcaaccc ctgttaaagc taataaagca ttcagcaagg gccccctttc accacaagaa
     1501 gtagaatact ggattttaat tggagagtca agtagaaaac atcctgccat tcactgtaaa
     1561 agatgggcag atattgtcac tgatctaaac actcaaaatc cagaattctt agatatccga
     1621 catctagaga ggggactgca attccggaaa acaaagaagg ttggaggaaa tttgcattgc
     1681 atcatagcat tccagagact cagttggcaa agatttggct tttggaactt tccatttgga
     1741 accattacac aagaatcaca acctcccaca catgtcctgg gaattgccaa atctgagagt
     1801 gaggacaata tttctaagaa gcagtatggg cgtctgggca ggtccttcag tgctagtttc
     1861 caccaggact cagcatggaa gaaggtgtct ggcatccacg agagaaggaa cagtggctac
     1921 cacagctata gagattacaa tggcaatgac tgaccatgcc aaaacttaat cgctgatgtc
     1981 acccacatag ctgttatgta caggactgca ttaagccatc agatggtttt attaagtcta
     2041 tcaataggaa cagattttgt ggtacaaagc ataccctgta gttctctagt taaagcctac
     2101 ttaggattac tatgggtggc ttcaaattat acaaacaggt aagaacagat ttctgccctt
     2161 ctaacgttaa aagtagataa gcaatgtaga taaagggttt cacaaaatcc aacacaatca
     2221 aaactgcttc aaagcaaaac cacaaataca tttaatagca tcaaaactca aaactactta
     2281 agcatgaagt gatttattga aacttgatcc ctagtcattt atttcggata ctttgattcc
     2341 tatggcacca tctgtcctta aaaaatgggg gcagtcaagg tctggttttt gcttatagtt
     2401 aaaactaatt taaaattatc tttctagtct atttgttctt tcagtgctaa cagtatccac
     2461 cccacatctt tgctttcctg aataactgtc tcaggattct ccaaaaagaa gcagaaaata
     2521 ttcaagaaac tgactttttc tataggtgca gatgggtgac ataggtcatt ggtcctgata
     2581 ctcttgactt ggcacgtggc tgtgaaatag ttacaagaat aggtcttgag tgatgttcta
     2641 gaacaaacct tgttttaggg atatagttac agtccaaggt ttctgtatcc atggtaatat
     2701 gtgcagtgag atgtcacctt tgacttgtct cttaatggag tcatctgtta gcaacagcac
     2761 tgaagacgtg ttggcagtgt ccagctcact ctgaggacaa ctttgtattc taaattctga
     2821 gccgtttcct tttgtgaaac atccaagcaa ttaggtattt gaagtgtgtg ttaaaaattt
     2881 tggaagtgtg atttcaatac ttgagctcct ctttagctgc tgttttcctt ttgctgccaa
     2941 ggtgtgactc atagacgtct gtgatactgt tctttcctgt cataagttca ctccagggtt
     3001 caaatcagta acttggtgat tacaaggttc tgagtatgtt ggaaccatat tgcaataaaa
     3061 aggaaggttt tgacttttta aacaaaattc atttttctct tgaattttat atccatttat
     3121 ccatgcatat atgtttagcc tacagaatta caaaatggtc ctgtttctga agagattatt
     3181 tagcttgaaa tgtaaaggac tgaaagattt gtaggttgtt gatttttgtt acttcacact
     3241 ggaaatttga aaatgttttc atcaaataaa gatttgtttt ctacttttaa tccta
//
