LOCUS       NM_001106888            4494 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus BICRA like chromatin remodeling complex
            associated protein (Bicral), mRNA.
ACCESSION   NM_001106888 XM_001065444 XM_217342
VERSION     NM_001106888.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4494)
  AUTHORS   Alpsoy,A. and Dykhuizen,E.C.
  TITLE     Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its
            paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
  JOURNAL   J Biol Chem 293 (11), 3892-3903 (2018)
   PUBMED   29374058
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473987.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_217342.4, XM_001065444.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..4494
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /note="BICRA like chromatin remodeling complex associated
                     protein"
                     /db_xref="GeneID:301235"
                     /db_xref="RGD:1305680"
     exon            1..60
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            61..106
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..3302
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /note="GLTSCR1-like; BRD4 interacting chromatin remodeling
                     complex associated protein like; BRD4 interacting
                     chromatin remodelling complex associated protein like"
                     /codon_start=1
                     /product="BRD4-interacting chromatin-remodeling
                     complex-associated protein-like"
                     /protein_id="NP_001100358.1"
                     /db_xref="GeneID:301235"
                     /db_xref="RGD:1305680"
                     /translation="MDDDDDSCLLDLIGDPQALNYFLHGPSSKSSGDDVTNAGYSAAN
                     SNSIFANSTNADPKSSLKGVSNQLGEGPSDGLPLASSLQFLEDELESSPLPDLSEDQP
                     FDILQKSLQEANITEQTLAEEAYLDASIGSSQQFAQAQLHPSSSASFTQASNVSNYSG
                     QTLQPIGVTHVPVGASFASNTVGVQHGFMQHVGISVPSQHLPNSSQISGSGQIQLIGS
                     FGNQPSMMTINNLDGSQIILKGSGQQAPSSVSGGLLVHRQTPNGNSLFGNPTSSPGAQ
                     PVTVPFNSTNFQASLPVHNIIIQRGLAPNSNKVPINIQPKPIQMGQQSTYNVNSLGLQ
                     QHHVQQGISFASASSPQGSVVGPHMSVNIVNQQNARKPVTSQAVSSAGGSIVIHSPMG
                     QPHTPQSQFLIPTSLSVSSNSVHHVQTINGQLVQTQPSQLISGQVASEHVMLNRNSSN
                     MLRTNQPYAGQMLNNQSAAVQLVSGQTFATSGSPVIVNHASPQIVGGQMPLQQASPTV
                     LHLSPGQSSVSQGRPGFATMASVSSMSGPARFPAVSSASTAHPTLGPAVQSGASGSNF
                     TGDQLTQANRTPVPVSVSHRLPVSASKSPSTLSSTPGTQQQFFCQAPKKCLNQTAPIP
                     TPIPTSKTTDSLRQPQIPGLLSTALPGQDCGSKIMPAPLGTTQPQQENSVGSSPSQTA
                     VQVDSHSGQKRPAAKQLTKGAFILQQLQRDQAHAVTPDKSQFRSLTDTVQRLLSYHVC
                     QGSMPTEEDLSKVDSEFEEVATQLLKRTHAMLNKYRSLLLEDAMRINPSAEMVMIDRM
                     FNQEERASLSRDKRLALVDPEGFQADFCCSFKLDEAAPETPLDRSDQHRSKTSSLHQV
                     PRAQSRDRAKPGVAEATNHDQFHLVPNHIVVSAEGNISKKSEGHSRTLKFDKGVLGQY
                     RGPPEDKGGRRDPAKASGCSPGPEGHRKTLPRPDHGSESKLPGILASSHMEMPCLDSF
                     QDKALRNSPKNEVLHTDIMKGSGEPQPDLQLTKSLEKTFKNILELKNAGRPQNDPAAS
                     GAVDLDFPSFSPMASQENCLEKFIPDHSEGVVETDSILEAAVNSILEC"
     exon            107..155
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            156..224
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            225..1898
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            1899..2016
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            2017..2117
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            2118..2176
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            2177..2322
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            2323..2417
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            2418..2520
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
     exon            2521..4494
                     /gene="Bicral"
                     /gene_synonym="Gltscr1l; RGD1305680"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttattccacg catggcttga aatgggtgag aagcagggtt gccaggtgtc gatcactagt
       61 ttgtcatgga tgatgacgat gactcctgtc tcctcgatct tattggagac ccacaagcat
      121 tgaactattt tctgcacgga cctagcagta aatcgagcgg cgatgacgtg acgaacgcag
      181 ggtattctgc agccaattct aattcaattt tcgccaactc cacgaacgct gaccctaagt
      241 catccctcaa aggtgtaagt aaccagctcg gagaagggcc cagtgacggg ctgccgcttg
      301 caagcagcct tcagtttctt gaagatgaac ttgagtcttc tcctctccct gatctcagtg
      361 aggaccaacc ctttgacatt cttcagaaat ccttgcagga ggctaatatc actgaacaga
      421 cgctggcaga agaggcatat ctggatgcca gtataggctc gagccaacag tttgcacaag
      481 cccagcttca tccttcttca tcagcatcct ttactcaggc ttctaatgtt tctaattact
      541 caggtcagac actgcagcct atcggggtga ctcacgtgcc tgtcggagca tcgtttgcaa
      601 gcaatacagt gggtgtacag catggcttta tgcaacacgt ggggatcagt gttcccagcc
      661 agcatttgcc caatagcagc cagatcagtg gctccggtca gattcagtta atcgggtcct
      721 ttggtaatca gccttccatg atgactatta ataacctaga tggctctcaa atcatattga
      781 aaggcagtgg gcagcaagcc ccgtccagtg tgagtggggg gcttctggtt cacagacaga
      841 ctcctaacgg caactctttg tttgggaacc ccacttccag ccccggagca cagcctgtca
      901 ccgtcccatt taacagcaca aattttcaag catctctacc tgtgcataac atcattattc
      961 aaaggggtct cgcaccaaat tcaaataaag tcccaattaa tatccagcca aagccgatcc
     1021 agatgggtca gcagagtaca tacaatgtga acagccttgg actccagcag caccacgtcc
     1081 agcaagggat ctccttcgcc tctgcaagct cgccccaggg ctccgtggtt ggtccacaca
     1141 tgtctgtgaa cattgtcaac caacagaacg cgaggaagcc tgtcacctca caggcggtga
     1201 gcagcgcagg gggcagcatt gttattcact cccccatggg ccagcctcac acaccccaaa
     1261 gtcagttcct tatacccaca agcctttctg tcagctccaa ctcggtccac catgtccaga
     1321 ctataaatgg gcaacttgtt cagactcagc cctcccagct catctctggc caagtggcct
     1381 cagagcatgt catgttgaat aggaattctt ctaacatgct caggaccaac caaccatatg
     1441 ccggacagat gctcaacaac cagagtgccg ctgtccagct ggtgtctggg cagacttttg
     1501 ccacctctgg aagcccagtg atcgtcaacc atgcctctcc tcagatcgtg ggaggacaga
     1561 tgcccttgca gcaggcctca ccaactgtgc tacacctgtc gcctgggcag agcagtgttt
     1621 cccaaggaag gccaggcttc gccaccatgg cctcggtgag cagcatgtca ggacctgctc
     1681 ggttccccgc cgtcagctca gctagtactg cccaccctac tcttgggcct gcagtacagt
     1741 ctggggcatc aggatcaaac tttacgggag accagctgac acaggcaaac agaactccgg
     1801 tacccgtcag tgtgtcccac cgtcttccag tctctgcttc caaatctccc agcaccttga
     1861 gcagcacccc ggggactcag cagcagttct tctgtcaggc tccgaagaag tgtttgaacc
     1921 agaccgcccc cattcccacc cccattccca cgtccaagac cacagacagc ctgcggcaac
     1981 cacagatccc tgggctcttg agcacagcac tgccaggaca ggattgtgga agcaaaatta
     2041 tgccagcacc cttggggacc acacagccac agcaggaaaa ctcagttgga tcttccccga
     2101 gccagacagc cgtgcaggtg gacagtcatt caggacagaa gaggcctgct gccaaacagc
     2161 tgactaaagg agctttcatc ctccagcagt tacagaggga ccaagcccat gctgtgacac
     2221 ccgacaaaag ccagttccga tcactgactg acaccgtgca gagactgctc tcctaccacg
     2281 tgtgccaagg ctccatgccc acggaggaag acctgagcaa agtggacagt gaatttgaag
     2341 aagtcgccac tcagctcctc aaaaggaccc acgctatgct gaacaaatac agatccctgc
     2401 tcctcgaaga cgccatgagg atcaacccct ctgcagagat ggtgatgatt gataggatgt
     2461 tcaaccagga ggaaagagct tccctgtcac gggacaagcg tctggcgctc gtagatcctg
     2521 agggttttca ggccgatttc tgttgttcct ttaaacttga cgaagctgca cctgagacac
     2581 cgcttgacag gagtgaccag catcgcagca aaaccagctc gctccatcag gtgcccaggg
     2641 cccaaagcag agaccgagcc aagccaggcg tggcagaagc aacgaatcat gaccagtttc
     2701 atctagtgcc taaccacata gtggtctctg cagagggaaa catttctaaa aagtcagaag
     2761 gccacagtag aacactgaaa tttgacaaag gggtcttagg ccaataccgg ggtccgcctg
     2821 aggacaaggg cggccggagg gaccctgcca aggccagcgg gtgctctcca ggccctgaag
     2881 gccaccgcaa aactttgccc aggccagacc atggctctga gagcaagctc ccgggtatcc
     2941 tggccagctc gcacatggag atgccgtgcc tcgactcctt ccaggacaaa gccctgagga
     3001 attccccaaa gaatgaggtt ttacacacag acatcatgaa agggtcgggt gaaccccagc
     3061 cagatctcca gctcaccaag agcctagaga aaacctttaa gaacatcctg gaactcaaga
     3121 atgcggggcg gccgcagaac gacccagcgg ccagcggcgc ggtggacctg gacttcccca
     3181 gcttttctcc aatggcttcg caggaaaact gcctggaaaa gttcatcccg gaccacagcg
     3241 aaggcgttgt agaaacggac tccattttag aagcagctgt aaatagtatc ctagagtgtt
     3301 aatagcagcc gtcctccccc agaccctgcc ctggaccagt tacattctct cccagcaaag
     3361 caaatggaaa cgtctcctgt ccccagcctg cttggtcctc cgtcacaggt tatctttcta
     3421 atctccaccc tgttcttttg aagagcaata catgtcttcg tggctgcaga gagaccctca
     3481 gtaaaccccc ctctctagaa agcagtccga taggccctcc acatttcaag tgtcatggaa
     3541 gttttatggc cattgttggt taatttgttt tgtggtttgt ttcttagcac tgtcactcga
     3601 gaccacagta cacttggccc tgggtaacat tttgacaatc ataagtcatt tcaaaagaac
     3661 agacttatta aagaaaaatc aaacaggact gatagaagcc acttttttaa agactctctc
     3721 actgcagctc caaagtagtg gtttgctttt gttctgtttt gggggagagg gtatttgcgt
     3781 agggaagacc ccatgactct cctccatgct cggccctctg agcagtgaca gccagtgctc
     3841 tgcctggaac cccacaggcc tggccttaga cgccagtagc acagcgcaga gcaccctcag
     3901 actgccagtg ctgtgtgacg ctgctgaagc aaagcctttt gggtttgttg tttttttttt
     3961 ttttttaagc atatttatgt tgaattctgt ctgccaatgt tctgttctta accccaggtg
     4021 tacgccttga aattctcacg agctcagtag ggaacaatgg gagccagttc taaggcagca
     4081 agctggggag gctgctggag cccccagggt cttggtgcgt gcagcttaaa gagttttgcg
     4141 ttttataacc gggtaaaggc aacgtaacct atgttcttta gtgttgctga ctccgttcca
     4201 tttagcctct gtgtctcctc tccctcagcc cacagccaag gatcaaaagg ctttcaactt
     4261 gaaaatcacg ctgtgctctc tcagttgacg cttttgaagg gttcgctggc ctcgtttgtg
     4321 agaatagtag tcagcagtgt gtcatttatt cccaaacaca gtaaaccaaa ggtcacaacc
     4381 agcaggccac taaaggaagg aactgaggca ggagacgggc atgtcctggc cccgcctcgc
     4441 cgtgggtgct cctcgctcac ccgtggagcc ttcctctttt ttatttatgt tctt
//
