LOCUS       NM_001108940            3111 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus basic helix-loop-helix family, member e22
            (Bhlhe22), mRNA.
ACCESSION   NM_001108940 XM_001060194 XM_345190
VERSION     NM_001108940.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Elsen,G.E., Hodge,R.D., Bedogni,F., Daza,R.A., Nelson,B.R.,
            Shiba,N., Reiner,S.L. and Hevner,R.F.
  TITLE     The protomap is propagated to cortical plate neurons through an
            Eomes-dependent intermediate map
  JOURNAL   Proc Natl Acad Sci U S A 110 (10), 4081-4086 (2013)
   PUBMED   23431145
REFERENCE   2  (bases 1 to 3111)
  AUTHORS   Ross,S.E., McCord,A.E., Jung,C., Atan,D., Mok,S.I., Hemberg,M.,
            Kim,T.K., Salogiannis,J., Hu,L., Cohen,S., Lin,Y., Harrar,D.,
            McInnes,R.R. and Greenberg,M.E.
  TITLE     Bhlhb5 and Prdm8 form a repressor complex involved in neuronal
            circuit assembly
  JOURNAL   Neuron 73 (2), 292-303 (2012)
   PUBMED   22284184
REFERENCE   3  (bases 1 to 3111)
  AUTHORS   Feng,L., Xie,X., Joshi,P.S., Yang,Z., Shibasaki,K., Chow,R.L. and
            Gan,L.
  TITLE     Requirement for Bhlhb5 in the specification of amacrine and cone
            bipolar subtypes in mouse retina
  JOURNAL   Development 133 (24), 4815-4825 (2006)
   PUBMED   17092954
REFERENCE   4  (bases 1 to 3111)
  AUTHORS   Xu,Z.P., Dutra,A., Stellrecht,C.M., Wu,C., Piatigorsky,J. and
            Saunders,G.F.
  TITLE     Functional and structural characterization of the human gene
            BHLHB5, encoding a basic helix-loop-helix transcription factor
  JOURNAL   Genomics 80 (3), 311-318 (2002)
   PUBMED   12213201
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108940.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643298.10381.1,
                                        SRR26643298.10385.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3111              JAXUCZ010000002.1  102402622-102405732
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q24"
     gene            1..3111
                     /gene="Bhlhe22"
                     /gene_synonym="Bhlhb5"
                     /note="basic helix-loop-helix family, member e22"
                     /db_xref="GeneID:365748"
                     /db_xref="RGD:1305451"
     exon            1..3111
                     /gene="Bhlhe22"
                     /gene_synonym="Bhlhb5"
                     /inference="alignment:Splign:2.1.0"
     CDS             388..1446
                     /gene="Bhlhe22"
                     /gene_synonym="Bhlhb5"
                     /note="basic helix-loop-helix domain containing, class B5"
                     /codon_start=1
                     /product="class E basic helix-loop-helix protein 22"
                     /protein_id="NP_001102410.1"
                     /db_xref="GeneID:365748"
                     /db_xref="RGD:1305451"
                     /translation="MERGLHLGAAAASEDDLFLHKSLGASAAKRLEAAFRSTPPGMDL
                     SLAPPTRERPASSSSPLGCFEPADPEGAGLLLPPPGGGGGASGGGVSVPGLLVGSAGV
                     GGEPSLSSLPAGAALCLKYGESAGRGSVAESSGGEQSPDDDSDGRCELVLRAGGPDPR
                     ASPGAGSGGAKVAEGCSNAHLHGGSGLPPGGPTSGSGGNGGGGSSKKSKEQKALRLNI
                     NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEEMRR
                     LVAYLNQGQAISAASLPSSAAAAAAAAALHPALGAYEQAAGYPFSAGLPPAASCPEKC
                     ALFNSVSSSLCKQCTEKP"
ORIGIN      
        1 taaaagactc ccccgtctgt ggcggtggct ggttgatggg tccggaaatc tcttgaaggt
       61 gaatccaagc aagataaacg gtgcagagag gaggcgcggg gttggactca gaggcggcag
      121 cggcggcagc tccactccct ccgcgaccag cctcccacca tgaggggccg cggcccatgg
      181 tgagccttag cagccagcac cgtcggctgg aaacgaagaa gaagaagaag aggaggcggc
      241 gagcgcgggg gaaggcgaaa aagaaaaaga aggggacagg gctgcgggca gtgcggggac
      301 cgacgcacgc agcagctccg gagcccggcc ggcgcgcgtc tgtgcagccg cctgactccc
      361 gagcccaggc ggcggctggc cgggacgatg gagcgcggtt tgcaccttgg tgcggcggcc
      421 gccagcgaag acgacctctt cctgcacaag agcctgggcg cctccgccgc caaacgcctg
      481 gaggcggctt ttcgctccac gcccccgggc atggacctgt ccctggcgcc gccaactcgc
      541 gaacgcccgg cgtcgtcctc gtcgcccctc ggctgcttcg agcctgctga ccccgaaggg
      601 gccgggctgc tgttgcctcc gcccggagga ggcggcggtg cgagcggcgg cggggtgagt
      661 gtccccgggc tactcgtggg ctcagcgggc gtggggggcg agccgagcct gagcagcctg
      721 ccggcggggg ctgccctgtg cctcaagtac ggcgagagcg cgggccgcgg ctccgtggcc
      781 gagagtagcg gcggggagca gagccccgac gacgacagcg acggccgctg cgagctggtg
      841 ctgcgagccg ggggccccga cccacgggca tcgccaggag cggggagcgg cggtgccaag
      901 gtggcggagg gctgctccaa cgcccacttg cacggtggct cgggcctccc cccggggggg
      961 cccacaagtg gcagcggcgg caacggcggc ggcggcagca gcaagaaatc caaagagcag
     1021 aaggcgctgc gcctcaacat caacgcccgc gagcgccgga ggatgcacga cctgaacgac
     1081 gctctagatg agctgcgcgc ggtcatccct tacgcgcaca gcccttcggt gcggaagctc
     1141 tccaaaatcg ccacgctgct cctcgccaag aactacatcc tcatgcaggc acaggccctg
     1201 gaggaaatgc ggcgcctagt cgcctacctc aaccaaggcc aggccatctc ggcagcctct
     1261 ctacccagtt cggcggccgc cgccgcggcg gccgctgccc tgcacccagc gctaggcgcc
     1321 tacgagcagg cagccggcta cccctttagt gcagggctgc cgcccgctgc ctcctgtccc
     1381 gaaaagtgtg ccctattcaa cagcgtctca tctagcctct gcaaacagtg cacggagaag
     1441 ccttaaacac tccctccctc gaaaaacctc gagaccgacc ccaaagctag aggaaagtga
     1501 gaagctgctc cccatccctt ttactctcct aaattgtcaa acacttgcag ggcaaacaaa
     1561 gcagaggcag ggacgtagaa agtatcagag acaaaccgga ctttcagcct tggcatgccg
     1621 ggaatctcgg tctttggggt ggggagggag ggcagaggga ggtttagtcg ggatgaagtg
     1681 tggttctttt ttcccctcag aaaagtggca actttgatgg caacctagac ttcaaggaag
     1741 tacagttttc tttgaaggtg aaaaataagt tgaaaagtag tgctggatta ttagatggga
     1801 aaagtacgga gtggcaaaat tctaatccta ctaacagctg agaattggca agtgatgaag
     1861 gggagagggg ttcagagttg agaggcttgg ggacagaata ttcatccaga caaatcagaa
     1921 agggcactca aaaatacatc ttgattctga gccaggagaa aaacttgaaa tgaagactta
     1981 tttaagtgga ggggaaagca gagagacatg ttgctatgaa agacttgtat tttttattgt
     2041 ctctgaactt aaaatcctgt gaaaatgctc aaagttttgg tgagagtgat ataaaaagca
     2101 ggctgtggct gaaagaattg catttaaaat atttatgtgc accttgttac tttctactct
     2161 gcaatgatgt attaacaatt tatgatattt atttgttatt cttcaatgat ccacatcaac
     2221 agtatttatt atgtgttaca gtcttgggtc ttaagtgtag ttttttttta acgcttcaaa
     2281 aattctgttt tatatattaa cttacactgt gtgcctagtg ttcaaaggta tatttgccaa
     2341 caaatatgaa gaaaagtatt gatgtatctg agctgctgag gtttttggaa ggtcattgga
     2401 tattttcagt tgcatcatcc atgtattcaa attgagcttt aataaattgc ttcagtccaa
     2461 aaattacagg aaaggtgtat tcttaattga tgaataaatt gatctctttc ccaaaaggca
     2521 cctatttgca ttccaaaatt gaaaaaaaaa acagcaatag attttataag taaggacatt
     2581 ctaggcaaat atatttttca ggttgtgctg tgcattttcg aaggtctaat ttaattgtct
     2641 ttaatataga tgtacatata taagttattc taactgtgac gaattaagtt aagagactgg
     2701 tttgatttgc ttttggtgtg aaatcctttg ttatttttct aagaaaaata aaatttaaaa
     2761 gaaatgaaat aaagctaagg aagagcaaga agctatttac ccaaagtgag ctttcagttt
     2821 tagtttgcat ggctatctgc ctgcctttcc tcctatgaaa atccagaaaa cctcttttta
     2881 aaatggagtc ttgctatttt ccactcctta cagataatac aaattcagtt tgtcaggttg
     2941 gatggtgatt tcagagctat ggtggatcta tcggtgggtt tcggatgtgt aaagattgat
     3001 atatatatat atatatatat attaaatagg tcaatcagac tatgacagca atgtacgacc
     3061 atttgtatgt gtatgtatgt cagaaagaat ctttattaaa atattttgat c
//
