LOCUS       NM_019368               1607 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Bet1 golgi vesicular membrane trafficking
            protein-like (Bet1l), mRNA.
ACCESSION   NM_019368 XM_006230574
VERSION     NM_019368.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Bateman,N.W., Dubil,E.A., Wang,G., Hood,B.L., Oliver,J.M.,
            Litzi,T.A., Gist,G.D., Mitchell,D.A., Blanton,B., Phippen,N.T.,
            Tian,C., Zahn,C.M., Cohn,D.E., Havrilesky,L.J., Berchuck,A.,
            Shriver,C.D., Darcy,K.M., Hamilton,C.A., Conrads,T.P. and
            Maxwell,G.L.
  TITLE     Race-specific molecular alterations correlate with differential
            outcomes for black and white endometrioid endometrial cancer
            patients
  JOURNAL   Cancer 123 (20), 4004-4012 (2017)
   PUBMED   28654152
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Edwards,T.L., Hartmann,K.E. and Velez Edwards,D.R.
  TITLE     Variants in BET1L and TNRC6B associate with increasing fibroid
            volume and fibroid type among European Americans
  JOURNAL   Hum Genet 132 (12), 1361-1369 (2013)
   PUBMED   23892540
REFERENCE   3  (bases 1 to 1607)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   4  (bases 1 to 1607)
  AUTHORS   Amessou,M., Fradagrada,A., Falguieres,T., Lord,J.M., Smith,D.C.,
            Roberts,L.M., Lamaze,C. and Johannes,L.
  TITLE     Syntaxin 16 and syntaxin 5 are required for efficient retrograde
            transport of several exogenous and endogenous cargo proteins
  JOURNAL   J Cell Sci 120 (Pt 8), 1457-1468 (2007)
   PUBMED   17389686
REFERENCE   5  (bases 1 to 1607)
  AUTHORS   Tai,G., Lu,L., Wang,T.L., Tang,B.L., Goud,B., Johannes,L. and
            Hong,W.
  TITLE     Participation of the syntaxin 5/Ykt6/GS28/GS15 SNARE complex in
            transport from the early/recycling endosome to the trans-Golgi
            network
  JOURNAL   Mol Biol Cell 15 (9), 4011-4022 (2004)
   PUBMED   15215310
REFERENCE   6  (bases 1 to 1607)
  AUTHORS   Volchuk,A., Ravazzola,M., Perrelet,A., Eng,W.S., Di Liberto,M.,
            Varlamov,O., Fukasawa,M., Engel,T., Sollner,T.H., Rothman,J.E. and
            Orci,L.
  TITLE     Countercurrent distribution of two distinct SNARE complexes
            mediating transport within the Golgi stack
  JOURNAL   Mol Biol Cell 15 (4), 1506-1518 (2004)
   PUBMED   14742712
REFERENCE   7  (bases 1 to 1607)
  AUTHORS   Zeng,Q., Tran,T.T., Tan,H.X. and Hong,W.
  TITLE     The cytoplasmic domain of Vamp4 and Vamp5 is responsible for their
            correct subcellular targeting: the N-terminal extenSion of VAMP4
            contains a dominant autonomous targeting signal for the trans-Golgi
            network
  JOURNAL   J Biol Chem 278 (25), 23046-23054 (2003)
   PUBMED   12682051
REFERENCE   8  (bases 1 to 1607)
  AUTHORS   Xu,Y., Martin,S., James,D.E. and Hong,W.
  TITLE     GS15 forms a SNARE complex with syntaxin 5, GS28, and Ykt6 and is
            implicated in traffic in the early cisternae of the Golgi apparatus
  JOURNAL   Mol Biol Cell 13 (10), 3493-3507 (2002)
   PUBMED   12388752
  REMARK    GeneRIF: Data suggest that GS15 exists in a distinct SNARE complex
            that contains syntaxin5, GS28, and Ykt6, and may be involved in
            both ER-to-Golgi and intra-Golgi transport.
REFERENCE   9  (bases 1 to 1607)
  AUTHORS   Xu,Y., Wong,S.H., Zhang,T., Subramaniam,V.N. and Hong,W.
  TITLE     GS15, a 15-kilodalton Golgi soluble N-ethylmaleimide-sensitive
            factor attachment protein receptor (SNARE) homologous to rbet1
  JOURNAL   J Biol Chem 272 (32), 20162-20166 (1997)
   PUBMED   9242691
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Mar 2, 2021 this sequence version replaced
            XM_006230574.4, NM_019368.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ228853.1, SRR26360176.119959.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760475,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-159               JAXUCZ010000001.1  205364548-205364706 c
            160-288             JAXUCZ010000001.1  205363774-205363902 c
            289-380             JAXUCZ010000001.1  205362633-205362724 c
            381-437             JAXUCZ010000001.1  205362352-205362408 c
            438-1607            JAXUCZ010000001.1  205361041-205362210 c
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..1607
                     /gene="Bet1l"
                     /gene_synonym="Bet1; Gs15"
                     /note="Bet1 golgi vesicular membrane trafficking
                     protein-like"
                     /db_xref="GeneID:54400"
                     /db_xref="RGD:71051"
     exon            1..159
                     /gene="Bet1l"
                     /gene_synonym="Bet1; Gs15"
                     /inference="alignment:Splign:2.1.0"
     exon            160..288
                     /gene="Bet1l"
                     /gene_synonym="Bet1; Gs15"
                     /inference="alignment:Splign:2.1.0"
     CDS             270..605
                     /gene="Bet1l"
                     /gene_synonym="Bet1; Gs15"
                     /note="golgi SNARE, 15 kD; GOS-15; vesicle transport
                     protein GOS15; golgi SNARE with a size of 15 kDa; Golgi
                     soluble N-ethylmaleimide-sensitive factor attachment
                     protein 15; blocked early in transport 1 homolog like"
                     /codon_start=1
                     /product="BET1-like protein"
                     /protein_id="NP_062241.2"
                     /db_xref="GeneID:54400"
                     /db_xref="RGD:71051"
                     /translation="MADWTRAQSSGAVEEILDRENKRMADSLASKVTRLKSLALDIDR
                     DTEDQNRYLDGMDSDFTSVTGLLTGSVKRFSTVARSGRDNRKLLCGMAVVLIVAFFIL
                     SYLLSRTRT"
     exon            289..380
                     /gene="Bet1l"
                     /gene_synonym="Bet1; Gs15"
                     /inference="alignment:Splign:2.1.0"
     exon            381..437
                     /gene="Bet1l"
                     /gene_synonym="Bet1; Gs15"
                     /inference="alignment:Splign:2.1.0"
     exon            438..1607
                     /gene="Bet1l"
                     /gene_synonym="Bet1; Gs15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctccttaca ctcttgttcc cgtactgtga taaaagaggg agcgccggct cctggccgct
       61 tagtcagttg gggaagacga ttctcgcggt catcttcctg atgctcatct tccacgggaa
      121 ataaggaaag agaagtacga cttggatggt caaaataata ctcttctccc ggaagttatt
      181 agacctgagg cggaaccgga agacccaggt agtggtgcca cgtccgtcgc tgtgttgcct
      241 actccccgag tgggacctcg gaaggcgcga tggcagattg gactcgagct cagagttctg
      301 gtgctgtgga ggagattcta gacagagaga acaagcggat ggctgacagc ctggcctcta
      361 aggtcaccag gcttaaatcg ctggctttgg acatcgacag ggacacggaa gaccagaacc
      421 gatacctaga tggcatggac tcagatttca caagtgtgac tggcctactc acagggagtg
      481 tgaagcgctt ttccacggtg gcacggtctg ggcgagacaa ccggaagctt ctgtgtggta
      541 tggctgtggt cttaattgtg gccttcttca tcctctccta cctcttgtcg aggacaagga
      601 cgtgagccag tgggagccaa gggcagccag actcttgtcc acctggtatc ctggcttcct
      661 aaggacctga ctacagaaac aatattcctt tgaaattatc atcacgggtc attcgtcttc
      721 ctaagtcagg acgactgcgg ctgcctctgt cgtaacgagc tcctcttggc ttgtcctgtg
      781 tatgaaggaa gaagaaaaag gcaaaaccca gtgctactcc ctggtgctaa agacactggc
      841 agagtcagag ccatgttgta tgagaatgag ccagttctat tgagagcatc tgagagtgct
      901 gaatgcgcct accgtggcca gtggccacac tcctcaaggg ccttctgttg tgctctaacc
      961 tgtttatgtc tggtttaaac catgtccgtg ttcttgaaga gtctgaagct gacaccagaa
     1021 gggaatgtgg ccgtgagccc tctccaaatg atggtcgtcg ggatggggtt gacagtgaca
     1081 ccaggctgag actgctggtc aggaatggac ctgtgcagtc tggctcaatt cagaccccag
     1141 ggaagaggca aactgtggat agaggagcag actgcagtcc agaggcactg gtctaagatc
     1201 cttctgggct gtaagaccat gtttccagga gcacagatgt gtgtccttgg cattgagaat
     1261 cttcccagta tcaaagatgc ctccatccct gggtagcttt cagtcaggca gtgctggagt
     1321 ggtctctctg ctgggaatcc ttatggggct ggaggccacc catgaaagca tttgtgtagt
     1381 gggaacttga ccttgtactg aaccttgccc taccccgtac agccagtctc ccttgtgagg
     1441 gagattgagc cacctccttg ttgcacaact ccatagactc acccgctctg ccggccctcc
     1501 ctgccactgt ggccagcccc atttgcacac aaactgactt gcggagctga cagggccgac
     1561 aggacctcgc accttttgtt ttcacataaa atgtctttaa gaaatga
//
