LOCUS       XM_001066317            4555 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus bestrophin 4 (Best4), mRNA.
ACCESSION   XM_001066317
VERSION     XM_001066317.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_001066317.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4555
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4555
                     /gene="Best4"
                     /note="bestrophin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 long SRA read, 13
                     Proteins"
                     /db_xref="GeneID:689103"
                     /db_xref="RGD:1596200"
     CDS             1245..2609
                     /gene="Best4"
                     /codon_start=1
                     /product="bestrophin-4"
                     /protein_id="XP_001066317.1"
                     /db_xref="GeneID:689103"
                     /db_xref="RGD:1596200"
                     /translation="MTVSYTLKVAEARFGAFSGLLFRWRGSIYKLLYREFLLFCALYA
                     TLNITYRLLLTQEQKRIYAQVARYCNRSADLIPLSFVLGFYVTLVVNRWWSQYTSIPL
                     PDQLMCVISASVHGVDQSGRLLRRTLIRYANLASVLVLRSVSTRVLKRFPTMEHVVDA
                     GFMSQEERKKFESLKSDFNKYWVPCVWFTNLAAQARRDGRIRDDIALCLILEELNKYR
                     AKCGMLFHYDWISIPLVYTQVVTIAVYSFFTLSLIGRQFVESDKESSPAPWYLDMFVP
                     LTTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNQLIDRNFQVSLLSVDDMYQNLPPT
                     EQDLYWDEARPQPPYTVATAAESQRPSFMGSTFNLRMSDDPEQCLQVEASRRFDLPAP
                     VTQTSQTPLLGRFLAARAPSPAVSLQNLRTSHLLHLRPGGEEAEGRIEEAVDEGSENE
                     AMEP"
ORIGIN      
        1 cccaagtccc tagattcatg ccctttttaa cactgtggca tggaaatggt ctgactagga
       61 ccccagaacc cgggacagga gcctggcact gtgttgaggc cactggtacc aaggactccg
      121 atcttggtgc tcaagtcctg ctctagagtc caaacagggc acatctatcc tttcaagtgg
      181 catggtctcc tgcctccaac atgacctagc tgtgtgacct tgggcaagtc atttgcctct
      241 tggaacctaa tcggtgaaac tgggatgatt cctgactggt gaggatgtga ggagtccatg
      301 caaggaagat aaaaggtgtc ctcgacccag tgtctgtctg tctgtctgtc tgtctgtctg
      361 tctgtctgtc tattagtact ctgggatcag cagctggtag ttataataac agtttaccct
      421 gaactgtcat ctcacctgga gcataggata gaaatcctta ttgtccctag cttaaaggac
      481 atggtgtcac ctgtgaaatg tgggatcagg atacatgacg cttttgttcc tcaaagtcca
      541 gaccagcccc acaaggctag tagcacacac ccagttccca ggagcagcta gatgaccgcc
      601 tccatccatc aatgacagct ctagtccagc ctaactttat ggacccagcg gctacttaag
      661 accgggaaga gtgggctctg gtccagttct tccaggctgc tgctcagaac aggtaggcag
      721 gtgtgagcgg ggatagggac cctgggactt gggagaccag gtaaccaggt gtgaaaaggg
      781 agctccaagg gaaagcggtg cctctgggct gcggttggtt ggttgtattt gttctgagag
      841 aaggtcttgc tctacagtgg gggctggtct tgaacttgtg atctcctgcc atgagtgttg
      901 gacttgtaga catgcaccat ggtacccagt aggttggggc tctgattctc aacactccag
      961 aatctactta tcccagctgc aaaggcagaa gagttatgga aaacctctgt gaggggagta
     1021 gagtccagtc ccactttacc taactccatc ctggtttcac ccatgttctg cagagagttt
     1081 atactttgtc tgccctacgc ctttttagcc ccttgtctac cgacacaggg tgaagaagct
     1141 cggccagaga taaagggaat ttgcttgggg tgctgggctt agtggtagga aggcaagcag
     1201 agaagagaac agttccgtga ccttttgtgc caggccccag caccatgacg gtgtcttaca
     1261 ctctcaaagt ggcagaggca cgcttcggag ccttctctgg cctgctcttc cgctggaggg
     1321 gcagcatcta caagctcctg tacagagagt tcctgctctt ctgcgccttg tatgctacac
     1381 tcaacatcac ctacaggctg ttgctgaccc aggagcagaa gcgtatttat gcccaggtgg
     1441 cccgatattg caaccgttca gcagacctca tccccttgtc ctttgtgctg ggtttctacg
     1501 tgactttggt ggtgaaccgt tggtggtctc agtacacaag cattccactg ccggaccagt
     1561 taatgtgtgt catctcagcc agtgtgcacg gtgtggacca gagtggccgt ttgctacgcc
     1621 gaactctcat ccgctatgcc aacctggcat cggttttggt gctacgttcc gtgagcaccc
     1681 gtgtactcaa gcgcttcccc accatggagc atgtggtgga cgcaggtttc atgtctcagg
     1741 aagagaggaa aaagtttgag agcttgaaat cggactttaa caagtactgg gtgccttgtg
     1801 tctggttcac taatctggcc gctcaggccc gcagagatgg acgaatccgt gacgacatcg
     1861 ctctctgtct catactggaa gagctgaaca agtatcgggc caaatgcggc atgttgttcc
     1921 actatgactg gatcagcatc ccccttgtct acacacaggt ggtgacgata gctgtctatt
     1981 ccttcttcac cctttccctg attggccgcc agtttgtgga gtcagacaag gagtcctctc
     2041 cagccccgtg gtacctggac atgttcgtgc ctctcaccac attgctgcag tttttctttt
     2101 atgctggttg gctcaaggta gctgaacagc tcattaaccc ctttggtgag gatgatgacg
     2161 actttgagac aaatcagctc atagaccgaa actttcaggt gtccctgctc tctgtggatg
     2221 atatgtacca gaacctgcct cccactgagc aggatctgta ctgggatgag gctcgacctc
     2281 agccacccta tacggtggcc acagctgctg agtcacaacg tccttccttc atgggttcca
     2341 ctttcaacct gcgcatgagt gatgacccgg agcagtgcct gcaggtggag gcatctcgga
     2401 ggttcgacct gccagcgccc gtcacacaga cctcgcagac cccgctgctg ggccgcttcc
     2461 tggctgcaag agcgccctca cctgctgtaa gcctgcagaa cctcaggacc tcacacctgc
     2521 tgcacctgcg acctggcggt gaggaggctg agggccgcat tgaagaggct gtggatgaag
     2581 gatctgagaa tgaagccatg gaaccctgag aatcctctcc gcgggtggct cagcccctct
     2641 tccccagctt cactgggtct taacatacac agctaacaac aacttttctg gacggcagga
     2701 ttggctattg ggaaagattt ggggacagcc cttgaaagca aagctggagt ccgagctgga
     2761 agtagggttg tgtctccatt tagcatgaaa ggctaaatat ttgttacctt ccctgttgcc
     2821 aagcattgga gctgggccag tggtccaaag aattgaggga gcatttgctt ccctgaaaag
     2881 tcttgcatgg tgcctagctc cactcccagc ctctgtgctt catttgattt agtcgtaggg
     2941 cattcaggaa gtggcatttc cagctttagg atgatgctgt gctactaacc tgggatagct
     3001 atttcagaat caagctttaa aagagcacac tccttacccc agtaacttca ctcactccaa
     3061 aggcaggtca gtgggagtgc tgtctacctc taatgctgtt ctctcgttag aatgagaata
     3121 tatccatcac tttgttgtgg aattatgttt aatttggtac ttgcctagga tattggtggg
     3181 atatctatat tcccagcaat ggtggcccac cattatgagg atttggttca tggagaccag
     3241 agttgtaaaa agctgacctc cccctgcctc agccttccaa gcaggtagga ttacaggtta
     3301 tgtccgatat tttcaaaaat attcttgtac atgaatgttt gtcacacagt gtcttaactc
     3361 ctgggacctc agaagtcagt tgtgagctgc cctgtgggtc ctgggaactg cacctgagtc
     3421 ctcactcatg agccacccct ctctgtccct ccaattttaa aatgaaaatc acactctatt
     3481 tatcagtatg tgtatgtata cacatgacta gagatccttt ataattcttc aaccctgtgg
     3541 gttccaggtg ttaaactcag gcccaccagg ctaggcactc actaccaagc tagctcattg
     3601 gccctagtgg caattatgag tgaacctgac cggtttgcta tgtgtgtggg gccagaagac
     3661 aatcttttgg gagttttctc ctatgcttct agaaatcaaa tttaagtcac ccagcttgta
     3721 tgacaactgt tttcacaggc tgaggcactt atccaaacct taagcgtaca atagcacagc
     3781 acagtgacaa tacatttcta cataaaatcc taagactagg attgggctat ctctccagcc
     3841 cctacacatc cacctccttg aaacctttga gctttacaac tgttaagaat aaatcccaaa
     3901 tttgccttga tgtggggaag gacagctagt gagtgacaca gctcactgaa gaatgcttga
     3961 ttaatatcca taaagtccaa acgggcaaag ctcggcagca cacaccgaca gtgagtgaag
     4021 atcagagtta cagcctagac catctgagaa ctgtttcaat acaacaaaac cataggaccg
     4081 atggtgcagg aaacctgacg gcacatacct gctctccttc cagcctgatg gctaaggcaa
     4141 gattaccaag aaactgaacc caaccttggg ctgcagaggg cacactcagc actggaaagt
     4201 gcttgctggt tggtgctgtc ccaggacttg cttagtcccc agcacccaat caggtggccc
     4261 ctaaccatct gtactccagc tcctagggac tcaacatcct tttccagtgt ctagggtggg
     4321 tgcacacaga acacgggagg gcagtggctc agtaggttaa atgcacttac tgccaagtct
     4381 gaccacccag actcagtgaa atttgtcctg aggtcagtga gggtcccccc accaatccta
     4441 aggactggag aacactcagc agttaagagc acttgctgaa gacatctgac ccctagcacc
     4501 acacagcagc ttatgtcagg gcagtgcaca catgtgatgt acactctagc tggcg
//
