LOCUS       NM_001393774            2478 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus BEN domain containing 6 (Bend6), mRNA.
ACCESSION   NM_001393774 XM_039083831
VERSION     NM_001393774.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Dai,Q., Ren,A., Westholm,J.O., Duan,H., Patel,D.J. and Lai,E.C.
  TITLE     Common and distinct DNA-binding and regulatory activities of the
            BEN-solo transcription factor family
  JOURNAL   Genes Dev 29 (1), 48-62 (2015)
   PUBMED   25561495
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Dai,Q., Andreu-Agullo,C., Insolera,R., Wong,L.C., Shi,S.H. and
            Lai,E.C.
  TITLE     BEND6 is a nuclear antagonist of Notch signaling during
            self-renewal of neural stem cells
  JOURNAL   Development 140 (9), 1892-1902 (2013)
   PUBMED   23571214
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Mar 10, 2021 this sequence version replaced XM_039083831.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1961472.1,
                                           SRR26360194.1164123.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760434,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-181               JAXUCZ010000009.1  43631014-43631194   c
            182-398             JAXUCZ010000009.1  43606530-43606746   c
            399-576             JAXUCZ010000009.1  43601501-43601678   c
            577-797             JAXUCZ010000009.1  43585388-43585608   c
            798-990             JAXUCZ010000009.1  43583638-43583830   c
            991-1126            JAXUCZ010000009.1  43582557-43582692   c
            1127-2478           JAXUCZ010000009.1  43576982-43578333   c
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q21"
     gene            1..2478
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /note="BEN domain containing 6"
                     /db_xref="GeneID:363212"
                     /db_xref="RGD:1310392"
     exon            1..181
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /inference="alignment:Splign:2.1.0"
     exon            182..398
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /inference="alignment:Splign:2.1.0"
     CDS             279..1124
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /codon_start=1
                     /product="BEN domain-containing protein 6"
                     /protein_id="NP_001380703.1"
                     /db_xref="GeneID:363212"
                     /db_xref="RGD:1310392"
                     /translation="MQKVLQTDDITNNQVLRKRKRKRTETANSENANSASDKAQRDPY
                     SGNAFLPGESSSDEETPLVELSKEELCNKIESLKEKLRSIRKENSRLRQSLVMLQVLP
                     QAVTQFEELVGMAETLLKSGGAMSTPASTLWRATNNSSPDSFASLCSNSNSTSSSPSS
                     LKAEEEQQPGEKQFTIERWQIARCNKSKPQKFINDLMQVLYTNEYMATHSLTGAKSST
                     SRDKVVKPAMNQNEVQEIIGVTKQVFPSADDVSIRRMIGQKLNNCTKKPSVSKAPTSQ
                     EISRS"
     exon            399..576
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /inference="alignment:Splign:2.1.0"
     exon            577..797
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /inference="alignment:Splign:2.1.0"
     exon            798..990
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1126
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /inference="alignment:Splign:2.1.0"
     exon            1127..2478
                     /gene="Bend6"
                     /gene_synonym="RGD1310392"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcggcccgc caggccacgc gccgggcggc ggtgcgcggg gacccccggg tttcgcctgt
       61 gcaagcctcc gcggaccgac tgctggaggc cgacgtcagg gggcgccaag gagccggggg
      121 gaacccgggc tcccgcctcc ctgagcccgc ccggaggctg gggctcggag gatgcagcag
      181 ggagcagcag gaaccgaacc gcatgcagta cagcagcacc tacatgggcc tttctgcctt
      241 cagcggtttc ggagagcctg ggctgactaa ttgagaaaat gcagaaggtc ttgcagacag
      301 atgacatcac caacaaccaa gttcttagaa aaagaaagag gaaacggaca gagaccgcga
      361 actcagaaaa cgcaaatagt gcctcggata aagcacagag agacccgtat tcaggaaatg
      421 ccttcctgcc tggggagagt tccagcgatg aggaaacccc cttagtggaa ctgtccaagg
      481 aggaactttg taacaaaatc gaaagcctga aagaaaagct gagaagcatc cggaaggaga
      541 acagtcggct tcgacagtct ttggtcatgc tgcaagtgtt accgcaggca gtcacccagt
      601 ttgaagaact ggtcggaatg gcagagaccc ttcttaagag tggaggggcc atgtccacgc
      661 cagcatccac tctctggaga gcaacaaaca actcctcccc agattcgttt gcctctctgt
      721 gcagtaattc caactctact tccagctccc caagttccct gaaggctgag gaagagcagc
      781 agcctggcga gaagcagttc acgattgaga gatggcagat tgcccgttgt aataagagca
      841 agcctcagaa atttattaat gatttaatgc aagtgcttta cacaaatgaa tacatggcca
      901 cacacagtct gactggggca aaatcctcta cttcaaggga caaggttgta aaaccagcta
      961 tgaatcagaa cgaagttcaa gaaatcatag gagtaacgaa gcaggtgttt cccagcgccg
     1021 atgacgtctc catcagacgg atgattggac agaagctcaa taactgcacc aagaagccga
     1081 gcgtgagcaa agctccgacc tcgcaggaga taagtagatc gtaacggtat cttaaaaaat
     1141 aaaacatgct tgtttctacg tcaaacattg gattttgctg gagaacgcga gacacgtcga
     1201 ggattggctg tagtagccat ggctttcctg gtggagccgt cggactggct gtagtaagaa
     1261 gctgcatgca gatcccatac taattaacca gtgatgcatc aaacccgaga atgtctgtca
     1321 aacaagcatg cgatacggtt cctttggaaa taacgcatct ttcacggccc cgaatacttc
     1381 cctgtaaact aacttaagat aataccagct cgtatcacag caacaaaaac atccaccctt
     1441 ccggatctca gtcactgtct tcaacaaacg ttgggaatta ttactatcag tgactccccg
     1501 ttacgctttt tatttggtga ggaggggctt tagcaagcac aggtttggta aaaatacatt
     1561 gtctacccac acgaaaggag cagagcgagc ctaagggaca ataaccgtgt gtaaccaagc
     1621 aatgatgact taacctacaa gtgatctaaa acgtgtgaaa taggattatg gaaaaaaaca
     1681 aaaaacataa agtcttttcc atcttcagct atcccaacgc actcctcatg gcctaaattc
     1741 ccatttttgt ttgttaattc catgcaccga cttttttaat agtctcctag tctgtgagga
     1801 aaacacgccc ctcagtgtcc attgttatcc agaatataac tagattcagg catgtaatgg
     1861 taaacacatc ccctaaagcg catgtaggac atgacataat gtctgatcag ccgtgatact
     1921 aaactgcttt aattttaacc tgtttacttc cactatagca gaaggaaaat taactgaaaa
     1981 aaaaatactg atttaataat ggcatggaag atgccatttt gtaaatcaac caaaaatagt
     2041 cttcaaagac ttttcccttg ataaaagatc ccctgactac tttgcaatga gaagctatac
     2101 ccttttcttt ttctccagtc cccacttcct ttcccctctg agacagggtt tctctgtgtg
     2161 gcccctggtt atcctggaac tcactctata gaccaggctg gcctcagact cagagatcca
     2221 cttgcctctg cctccaaagt tctgggattg atggtgtgca ccacccctgc ccagcgaagc
     2281 tatgcgtgag tttgtagact gatgtggaag cttggaaagg gggatttcta aagtacagtg
     2341 cagtggaccc agggattact ctgtaaaggt tgcttgatat aacagcgcag ttgtgcaaaa
     2401 acacatactc acgatgaagt aaattatgtg acatttgcta cttttaatta aataaaattt
     2461 aactccattg aaaatgaa
//
