LOCUS       NM_001108672            1834 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus BEN domain containing 5 (Bend5), mRNA.
ACCESSION   NM_001108672 XM_001063544 XM_342883
VERSION     NM_001108672.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Dai Q, Ren A, Westholm JO, Serganov AA, Patel DJ and Lai EC.
  TITLE     The BEN domain is a novel sequence-specific DNA-binding domain
            conserved in neural transcriptional repressors
  JOURNAL   Genes Dev 27 (6), 602-614 (2013)
   PUBMED   23468431
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Choi E, Lee J, Oh J, Park I, Han C, Yi C, Kim DH, Cho BN, Eddy EM
            and Cho C.
  TITLE     Integrative characterization of germ cell-specific genes from mouse
            spermatocyte UniGene library
  JOURNAL   BMC Genomics 8, 256 (2007)
   PUBMED   17662146
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474008.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001063544.1, XM_342883.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132266 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..1834
                     /gene="Bend5"
                     /note="BEN domain containing 5"
                     /db_xref="GeneID:362564"
                     /db_xref="RGD:1584958"
     exon            1..395
                     /gene="Bend5"
                     /inference="alignment:Splign:2.1.0"
     CDS             170..1435
                     /gene="Bend5"
                     /codon_start=1
                     /product="BEN domain-containing protein 5"
                     /protein_id="NP_001102142.1"
                     /db_xref="GeneID:362564"
                     /db_xref="RGD:1584958"
                     /translation="MYAFVRFLEDNVCYALPVSCVRDFSPRSRLDFDNQKVYAVYRGP
                     EELGVEPESPPRTPRDWGALLLHKAQILALAEDKSDLENSVMQKKIKIPKLSLSHVED
                     DGEAKDYGEEDLQLRHIKRPEGRKPSEAAHKSIEAVVARLERQNGLSLGHSTCPEEVF
                     VEASAGTEDMDSLEDAVVPRALYEELLRNYQQQQEEMRHLQQELERTRRQLVQQAKKL
                     KEYGALVSEMKELRDLNRRLQDVLLLRLGSGPAIDLEKVKSECLEPEPELRSTFSEEA
                     NTSSYYPAPAPVMDKYILDNGKVHLGSGIWVDEEKWHQLQVTQGDSKYTKNLAVMIWG
                     TDVLKNRSVTGVATKKKKDAIPKPPLSPHKLSIVRECLYDRIAQETVDETEIAQRLSK
                     VNKYICEKIMDINKSCKNEERREAKYNLQ"
     exon            396..529
                     /gene="Bend5"
                     /inference="alignment:Splign:2.1.0"
     exon            530..914
                     /gene="Bend5"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1063
                     /gene="Bend5"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1277
                     /gene="Bend5"
                     /inference="alignment:Splign:2.1.0"
     exon            1278..1834
                     /gene="Bend5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccgattgg cagagcgggg ctttcaggaa caataacagt ggggggagcc ggggccccgg
       61 ggagcctccc cgcccccggc ccggctgcgg ctcacgcccc tctaggggtc cccacctccg
      121 cgccgcccca cgggctgacc ggcgcccggg cccgcccccg gcgcccacca tgtacgcctt
      181 tgtgcggttc ctggaggaca acgtctgcta cgcgctgccc gtgtcgtgcg tgcgcgactt
      241 cagcccccgc tcgcgactgg attttgacaa ccagaaggtg tacgcggtgt accggggccc
      301 ggaggagctg ggcgtcgagc ccgagagccc cccgcgtacc cctcgggact ggggcgcgct
      361 gttgctccac aaggcccaga tcctggcgct ggcagaagac aaatctgacc ttgagaacag
      421 tgtgatgcag aagaaaataa aaatccccaa actttctctc agtcatgtag aagatgatgg
      481 ggaggctaaa gactatgggg aagaagattt acagcttaga cacatcaaga gaccggaggg
      541 gcggaagcct agtgaagcgg cccacaagag tatcgaggca gtggtggccc ggctagagag
      601 acagaacggc ctgagcctgg gccatagcac ttgtccagaa gaggtctttg tggaggcctc
      661 agcgggcaca gaggacatgg acagtctgga ggatgctgtc gttccccggg ctctgtatga
      721 ggagctgctg cgaaactacc agcagcaaca agaagagatg cgccacctcc agcaggagct
      781 ggagcggact cggaggcagc tcgtacagca agccaagaag ctcaaggaat acggggcatt
      841 ggtgtctgaa atgaaggagc tccgagacct caacaggaga ctccaagatg tgctactcct
      901 acgccttggc agtggtcccg ccattgactt ggaaaaagta aagtcagaat gtctcgagcc
      961 cgagccggag ttacggagca ctttcagtga ggaagcaaac acgtcgtcct attaccccgc
     1021 tcctgcgcct gtcatggaca agtatatcct agacaatggc aaggtccatc tgggaagcgg
     1081 gatttgggtt gacgaggaga aatggcacca gctacaagtt acccaaggag attctaagta
     1141 cacgaagaac ttggcagtca tgatctgggg aacagatgtt ctgaaaaaca gaagtgtcac
     1201 aggagtcgcc acaaaaaaaa agaaggatgc aatcccaaag ccacccctct ctcctcataa
     1261 gctaagcatc gtcagagagt gtttgtatga cagaatagca caagaaacgg tggatgaaac
     1321 ggaaattgca cagagactct ccaaagtcaa caagtacatc tgtgagaaaa tcatggatat
     1381 caacaaatct tgtaaaaatg aagaacgaag ggaagcaaaa tacaatttgc aataaacttt
     1441 gaattttttt cataaggcct ttgcattttc tttgtgtggt gtatgcattt cgggtgatgg
     1501 tgccatccaa atagactaca ccagacatgg ctgtgtctgg gcaggggcct ttagggcact
     1561 gaggtcagtg tctgattctg aacttgaatt ctgaacatgg acttcctact tcacagaagg
     1621 cagatggatt cacagagact cagcatcagg ctcaccacaa gcctcatgcc atcgccagtg
     1681 ttgttgtgga aaggaaaagc actttttgca gggctgtaaa gcatcagagt agcctgtcgg
     1741 gaccacaata cgaactgtta tttttaccat tggaggacat ctatctctgc tcctctattt
     1801 tgttctataa taaaattcca ttaattattg atgt
//
