LOCUS       XM_039099149            6016 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BEN domain containing 3 (Bend3), mRNA.
ACCESSION   XM_039099149
VERSION     XM_039099149.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099149.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6016
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6016
                     /gene="Bend3"
                     /note="BEN domain containing 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 25
                     ESTs, 6 long SRA reads, 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 91 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:683923"
                     /db_xref="RGD:1596570"
     CDS             148..2628
                     /gene="Bend3"
                     /codon_start=1
                     /product="BEN domain-containing protein 3"
                     /protein_id="XP_038955077.1"
                     /db_xref="GeneID:683923"
                     /db_xref="RGD:1596570"
                     /translation="MNSTEFSEDVEEVLKTNPVKVEGGDAAALDCSRNSRASEKHPLD
                     SVLTALHNSSKRKQLGSDGQADSVPGEKRRRLISEALVAGMRNRENSSPCQGNGEPAT
                     RGRGGSCVWPAEEEPSTEATAPSYKKPLYGISHKIMEKKNPPSGDLLSPYELFEKANS
                     SNSPSPLRLLNESQKRECGVGAATDGDSSIYFLIQKMFYTLNTLTSNMSQLHSKMDLL
                     SLEVGRIKKQVSSSELVAKFQPPPEYQLTAAELKQIAEQSLSCGDLACRLLVQLFPEL
                     FSDVDFSRGCSACGFAAKRKLESLHLQLIRNYVEVYYPSVKDSAVWQAECLPQLNDFF
                     SRFWAQREMEDSQPGGQVTNFFEADQVDAGHFLDNKDQEEALSLDRSSTIASDHVVDT
                     QDLTEFLDEASSPGEFAVFLLHRLFPELFDHRKLGEQYSCYGDGGKQELDPQRLQIIR
                     NYTEIYFPDMQEEEAWLQQCAQRINDELEGLGLEGGSEGEAPRDDCYDSSSLPDDISV
                     VKVEDSFEGERPGRRSKKIWLVPIDFDKLEIPQPDFEMPGSDCLLSKEQLRSIYESSL
                     SIGNFASRLLVHLFPELFTHENLRKQYNCSGSLGKKQLDPARIRLIRHYVQLLYPRAK
                     NDRVWTLEFVGKLDERCRRRDTEQRRSYQQQRKVHVPGPECRDLASYAINPERFREEF
                     EGPPLPPERSSKDFCKIPLDELVVPSPDFPVPSPYLLSDKEVREIVQQSLSVGNFAAR
                     LLVRLFPELFTAENLRLQYNHSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHYE
                     CIPSIDERCRRPNRKKCDILKKAKKVEK"
ORIGIN      
        1 cccagccagt cggcggggcc gccccggcca ggccctgcgc gctcggcccc cactgcggcc
       61 cgcgcgcccg ccccccgcac gtggcgcccg aactcggcgc gggccccgct ccgcaaagta
      121 gcaactctcg tcccagtgaa atagaagatg aactcaactg aattcagtga agatgtagaa
      181 gaagttctaa aaactaaccc cgtgaaggta gagggtggtg acgctgccgc gctggactgc
      241 tcccggaact ccagggcctc tgagaagcac cctctggaca gcgtcctcac tgccctccac
      301 aattccagca agcggaagca gctgggcagc gacggccagg cagactcagt ccccggtgag
      361 aagaggaggc ggttgatctc cgaggcactc gtggcaggca tgcgcaaccg tgagaacagt
      421 tcaccctgcc agggaaatgg ggaacctgcc accaggggcc ggggtgggag ctgtgtgtgg
      481 cctgcagaag aggagccttc caccgaggcc accgctcctt cctacaagaa gcccctgtac
      541 ggcatctccc acaagatcat ggagaagaag aaccctccct cgggagacct gctcagcccc
      601 tacgagctct ttgagaaggc aaactctagt aacagcccct cccctctgcg cctgctcaac
      661 gagtctcaga agcgggagtg tggtgtcggg gctgccaccg atggggactc cagtatctac
      721 ttcctgatcc agaagatgtt ctatacgctc aacacgctca cgtccaacat gtcccagctt
      781 cacagcaaga tggacctgct ctccctcgag gtaggccgca tcaagaagca ggtgagctct
      841 tcagagctgg tggccaagtt ccagcctccc cccgagtacc agctcacggc agcggagctc
      901 aaacagatcg ccgagcagag tctgtcctgc ggcgacctgg cctgccgact gcttgtgcag
      961 ctcttccccg agctcttcag cgacgtggat ttctcccgcg gctgcagcgc ctgtggcttc
     1021 gccgccaagc ggaagttaga gtcactgcac ctccagctca tccgcaacta cgtggaggtc
     1081 tactacccct ctgtgaagga ctcggctgtg tggcaggccg agtgcttacc acagctgaat
     1141 gacttcttca gccgcttctg ggcccagcgg gaaatggaag acagccagcc cggtggccag
     1201 gtcaccaact tcttcgaagc cgaccaagtg gatgccggcc acttcctgga caacaaggac
     1261 caagaggaag ctctgtctct ggaccgaagc agcaccatcg cctcggacca tgtggtagac
     1321 acacaggacc tcaccgagtt cctagatgaa gcctcctctc cgggcgagtt cgctgtgttc
     1381 ttgctgcacc gcctcttccc ggaactgttc gaccaccgga agctgggaga gcagtacagc
     1441 tgctacggtg atggcggcaa gcaggagctg gatccccaga ggctgcagat catccgcaac
     1501 tacacagaga tctactttcc tgatatgcaa gaggaggaag cttggctgca gcagtgtgcc
     1561 cagcgcatca acgatgagct ggagggcctg ggtctggagg gaggcagcga gggcgaggcc
     1621 ccgagggacg actgctacga ctcctctagc ctgccggacg acatctctgt ggtcaaggta
     1681 gaggacagct tcgaaggcga gcggccgggc cggcgctcca agaagatctg gctggtgccc
     1741 attgacttcg acaagctaga gattccgcag cctgacttcg agatgcccgg ttcggactgc
     1801 cttctgagca aggagcagct tcgcagcatc tacgagagca gcctgtccat tggcaacttc
     1861 gcctcccgcc tgctggtgca cctcttcccc gagctcttca cgcacgagaa cctgcgcaag
     1921 cagtacaact gcagcggctc cctgggcaag aagcagctgg atcccgcccg catcaggctg
     1981 atccgccact acgtgcagct cctctacccc agagccaaga acgaccgcgt gtggaccctg
     2041 gagtttgtgg gcaagctgga cgagcgctgt cggcgcaggg acacggagca gcgccgctcc
     2101 taccagcaac aacgcaaggt ccatgtgcct ggccccgagt gccgggacct agcaagttat
     2161 gcaatcaacc ccgagaggtt ccgtgaggag tttgaggggc ccccgctgcc tcctgaaagg
     2221 agcagcaaag acttttgcaa aatacccctg gacgagctgg tggtcccctc acccgacttt
     2281 ccggtgcctt ccccttacct gctctcagac aaggaggtac gcgagatcgt gcagcagagc
     2341 ctgtccgtgg gcaacttcgc tgcccggctc ctggtcagac tcttcccgga actcttcaca
     2401 gccgagaacc tccgactgca gtacaaccac tccggggctt gtaacaagaa gcagctggac
     2461 cccacgaggc tgaggctcat ccgccattac gtggaagctg tctaccccgt ggagaagatg
     2521 gaggaggtgt ggcactatga atgtatacct agcattgatg agcggtgtcg ccgccccaac
     2581 aggaaaaagt gcgacatcct caagaaagcc aagaaagtgg agaaatgaca gggttggggc
     2641 tgcccaggga cttgggtcac cacaggctga gcaatgggtg cccttgggac tgagcctcgc
     2701 tctggagccc gcgcacggta tccacagaca ggcaccttat gccagtgggg agtgggttcc
     2761 tacatttgca cacgtaaaca cctacccagc cgcaagaaag aagccttgaa tttggtcttt
     2821 ttgtatccat gactttgttc tgtgttccct ggtggcacag cgggagtttg ggaagggggg
     2881 ttagccaagc tgtgaaatca gagaattggt agggcagggt cccttcacag ggctggggtg
     2941 ccctccctaa cccttacgat tcaaaattca aatttagact agatgtggta gcccacatct
     3001 ctaggcggag cccatccagg gctaaataat gataccctgt ccaaaaaaca aatgacacaa
     3061 acacagcaac ttgtctctct ccccatcttt tacatcttct attttttttt ttaaactaaa
     3121 atgaaatttt gaaagaatca ttaggctctt tgggagccat tttatttagg aaaaaaaaaa
     3181 atcttaaaat atttgagatg agatgccgta agatttactt cagttgctgg gatttttaaa
     3241 gatgatttta gatttatgct tttttttttt tttttttttt tttttaagaa attccgtatt
     3301 caggcattgt gggtaactgg cttcaggtgg catagtgact agttttgcta atcctgtgtt
     3361 tggcatctgg ttttggaaga gtccagagtc cccttaggct cggcagaagg gatggatcct
     3421 aagcagtgtg tagccccttt cttactacgt gagcctccct tctgctgtgg cccctgagag
     3481 gtttcctgtg actcagcctg tccgccccgc cctgccgtgt ggtgctcacg tgtagaagcg
     3541 aacactggaa gatgatatga atgtagatag gtggaggcac gggtcttcac ggccttcgag
     3601 tgtctcccgc agccccgttc cctctccaca cagacggcgt gggcctagag gacgcattgg
     3661 aacgcaatgc gtagggacgt ttctgtgtga tttatgggtg agccttgggg ctcaccaaga
     3721 actgtttact ttccatgcat ttgtacaaag tctatgtccc cagacctcag tgttagctcc
     3781 cccatgagta gcacggtctt gaacctctga agcccagggc tgtttggcag gtgttggaag
     3841 gacccaagcc acctcaaatg gagtacccat aacccttccc ggtcccacca gacctcttcc
     3901 ctcaaacctt gcaggaagtt ctgccgtcct acccaggctc ccccagcatg gagtacgttc
     3961 cctgctgggg ccagatgcct gagaaggaaa ggaaacagtg tttcccaaac tgaatgcatc
     4021 tcatccttga cctagaacat taattgagtt gcccagggta gtcatgaaac ccttggggga
     4081 cattacagat gtgataactt taatggctta atattttgct accttaatat gcagaaatga
     4141 taggaataat ctatgaattt tctcataaag ataagaactt ttagttctag tagacaacat
     4201 ggtataattt tgcatgtacc cagtgggcat ttaaaaaaaa ataacagttt tcagtactat
     4261 aaagcttcta ttcatgtcat tttcagatta tttatgctat aactgtaaac ctaaattatt
     4321 gaccttgaga agtgcacaga ctttgtggca ctctgtcaca tgcccacccc tgcacaccta
     4381 tctccttatg agtgaggtga ggggccccac aaacggggca accttcttgt gcccaggaag
     4441 aaggtaatgg ggcagccaga agactcccct tcccccctca cttggcctct ctctaatgcc
     4501 ttagtcacac acatatatac acacacatgc gcacacacat gcacatacac acatacaccc
     4561 atgcacacac aggcacgcac gcatgcacac acactgcccc aaagatggcc gtggcactct
     4621 ctcactgctt cccctagctg gagagaattc catgggattt gttctggtct tgaggatgct
     4681 aaccaagagg attccaagcc atgtgaaaat cgtcccactc tctagaaagt ggagcgtggc
     4741 cctgccgctc agaagcacgg tgggtcactg cgttttttag aagtcctgtc tactcacagg
     4801 agagaaatgg caggctctag gaaccgagcg ggactttcca taacccagag cgtgttaaat
     4861 tctgggaacc cgtattttgg tttccttagt gctttaacca tgtagggctc ctcttcaccc
     4921 ccacccccag tcccatcgtc cctttcagtg aaaagagctg gacactctgg gagctgtttc
     4981 ctgcccctgc tggactgtat ggtcctcact tccccatccg tacaggaagc tccagtgggc
     5041 attttttttt ccatgaagca atataatata aaatacttat tttttcagaa tttaatgggt
     5101 ctcataaaat cttgttggca attgcttttc ctgtccccat ctaaattctc cgtgttttag
     5161 attatttttg ccttgtatcc agaggactag agattagccc cgacattctg atgttcacta
     5221 aaatagtatg tcacggtagg tggtagtggt cttggttttc tctgttagta agctgttaaa
     5281 gaatgtctga agatactctt gaatgtacag tgttcgagtc ctgctttatt tagttcatgt
     5341 ggccgcgtct gtctgatggc gaaacgtttg tcagggaatc catgtctagt gttattagtg
     5401 ctcaatgtcc ttccccttca gtgctgaacc ccgaaccttg ctctcctttt aagttagggg
     5461 gtgaggggtt cacatcagca gcaatcatca actgaccaat gggatctact tagtggcgac
     5521 tggatttggc ttgatcacgc cacagtgtgg gccactcggg ttctggtaga gattgcctca
     5581 gtttctacca ttcccccagc cattgcttct tacctgatcc agggggacct ggagaccccc
     5641 ccggttggag gtcactgggt cattctgaag tggggatggg gtgagggccc cggggctgtc
     5701 actcaccgct gtgggcagcc cttgcctctt gtagatccag ccttaatgtc tgacatccca
     5761 ggaagcgcag accctgcaca aagtggatat cagagtgact actgtgagga gtgatataac
     5821 aagaatagtt ttaccaaaga gaacgagata ccacgtcatg tctgcctgtt acactgatct
     5881 gagtgcaccc ttagaaaact gaatgtacca caaacccagg acattttttg gaacttgtat
     5941 gctctctagc aactttgtgt gaatttttat acaagcactg ttttattaat tatataaaat
     6001 ataaaaatag aaaaac
//
