LOCUS       XM_039099764            6696 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BCL6 co-repressor (Bcor), transcript
            variant X6, mRNA.
ACCESSION   XM_039099764
VERSION     XM_039099764.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099764.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6696
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6696
                     /gene="Bcor"
                     /gene_synonym="RGD1562735"
                     /note="BCL6 co-repressor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 12 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 42 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:317346"
                     /db_xref="RGD:1562735"
     CDS             1106..6379
                     /gene="Bcor"
                     /gene_synonym="RGD1562735"
                     /codon_start=1
                     /product="BCL-6 corepressor isoform X1"
                     /protein_id="XP_038955692.1"
                     /db_xref="GeneID:317346"
                     /db_xref="RGD:1562735"
                     /translation="MLSATPLYGNVHSWMNSERVRMCGTSEDRKIPVNDGDASKARLE
                     LREENPLNHNVVDTSGAHRIDGLAALSMDRTGLIREGLRVPGNIVYSGLCGLGSEKGR
                     EATPSSLSGLGFSSERNPEMQFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAV
                     ATAESLGLDRPASDKQSPLNINGASYLRLPWVNPYMEGATPAIYPFLDSPNKYSLNMY
                     KALLPQQSYGLAQPLYSPVCTSGERFLYLPPPHYVNPHIPSSLASPMRLSTPSASAAI
                     PPLVHCSDKSLPWKMGVNPGNPVDSHTYPHIQNSKQPRVTSAKAVNSGLPGDAALLLP
                     PSPRPSTRVHLPTQPAAESYSEFHKHYPRISTSPSVTLTKPYMTASSEFPTARLSSGK
                     YPKALDGGDCAPSMSGHSRKTTVQDRKDGGSPPLLEKQTVTKDVTDKPLDLSSKVVDV
                     DTSKTDHMKKMAPTVLVHSRATSGLVLSGSEIPKETSPPGNGCSIYRSEIISTAPSSW
                     VVPGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVITNVSGSVSSSGRP
                     ASASPAPNANADGTKTSRSSVDTTPSVIQHVGQPPSTPAKHSGSTSSKGAKASNPEPS
                     FKASENGLPPTSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIALSPLSLHGKGPVYPHP
                     VLLPNGSLFPGHLAPKPGLPYGLHTSRPEFVTYQDALGLGMVHPMLIPHTPIEITKEE
                     KPERRSRSHERARYEDPTLRSRFSEILEASSAKLHPDVPTEKNLKPNPSWNQGKTGAK
                     SDKLVYVDLLREETEAKADAGASKAGLVAENAGQNTDAAKPSADPVIQQHREFISLRE
                     ELGRITDFHESFTFKQAPGQPVFSLGKDSVAAGSNKENLGVQVATPFLETALGSEGPA
                     VTFGKTQEDPKPFCVGGAPPSMDVTPAYTKDGTDEAESNDGKVLKPKPSKLAKRIANS
                     AGYVGDRFKCVTTELYADSSQLSREQRALQMEGLQEDSILCLPAAYCERAMMRFSELE
                     MKEREVSHPATKDSEVCKFSPADWERLKGNQEKKPKSVALEEAIADQNDTERCDCSTG
                     NKHDLFEAPEDKDLPVEKYFLERPPVSEPPTDQGVVDMSHSPTLRLDRKRKASGDSTH
                     TETTVEELTEDPLKAKRRRISKDDWPEREMTNSSSNHLEDPHCNELTNLKVCIELTGL
                     HPKKQRHLLHLRERWEQQVSAAESKPGRQSRKEVTQAVQPEVTSQGNNITEERPGRKK
                     AEAKGNRGWSEESLKSCDNEQGLPVFSASPPMKSLSSTNASGKKQTQPSCTPASRPPA
                     KQQKIKESQKTDVLCTEEDEDCRAASPLQKYTDNIEKPSGKRLCKTKHLIPQDSRRSV
                     QITGEYYVENTDTKMTVRRFRKRPEPSTDYDLSPPAKQEPKPFDRLQQLLPATQATQL
                     PRSNSPQETTQSRPMPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNH
                     RDNAGYCALHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLL
                     SYGADPTLATYSGRTIMKMTHSELMEKFLTDYLNDLQGRSEEDTSGAWEFYGSSVCEP
                     DDESGYDVLANPPGPEDPDEEEDAYSDMFEFEFAESSLLPCYNIQVSVAQGPRNWLLL
                     SDVLKKLKMSSRIFRCNFPNMEIVSIAEAEFYRQVSTSLLFSCPKDLEAFNPEGKELL
                     DLVEFTNELQTLLGSSVEWLHPSDTGHENYW"
ORIGIN      
        1 ccgttttccc atctcttccc ttcgcgtagg ttttaagttc ggagcctcct ggagccagtg
       61 tagaccgctt gtttaggggc ggcgtggggg agcgagcaga gctctcagcc ctccgctggg
      121 ctgtggggaa cctggtggga agccctgatg ggcgtgtgaa agtctgcggc ccggggaagt
      181 tggtcccact cggagggcgg gcgacgcgag ggctctaggc gaagaggaac ttgcgcaccg
      241 ggcgcgatcc tcggctgagg cggagagggc gaggcggcac agggccagcg cttggagcag
      301 gcgggaggct gcgctacaga gccaccagaa acccggggac tccgggctgt ggcgaagagc
      361 gcctgctatt tacgaagaga gcctaggagc gccctgaacc gagtagggtg gctcgtggca
      421 cgtgtagtcc cagcggactt ctggctgccc ggttgctcaa cggaacacgt acccacgtcc
      481 cgaagaagac cgagcttgtc ccctagtagg ccgaggctga gccaggctta atttgctgtt
      541 aatgaatctt ttccagaaag tccgcgacct ccagctagac gctttgagtg cccgcgcgaa
      601 ggcgcgcgcc gccggcgtct agaaggtggg ggttggggga atagaaaagc gaagaaggaa
      661 ctggaggagg gttatgttta tttaaaaaca aaccttaaaa gaaaccagcg cgcttcaaat
      721 aggtattcat cctgcctggt tgcgtctaga ctagacagtc cggggtttta actgtgtaac
      781 cccctccccg cgcaccctta ttgagagaat gctaggggac gagtactgct acttggttct
      841 aaggtgagct ccttggacag aaaaaaaaaa atcctttaaa atggaccggg agttgaaaaa
      901 aaaaaaagag gaaatagccc accccagaag gtagtgggtg gtgagtagac agacttggta
      961 tttctagcca tctgacactt cctgtggatt ggaaacggac acctccggga gagatcgacc
     1021 tgtacacggt gctggattct gccaacagaa tttcttgtgt ggaagactag acgcctgaaa
     1081 ccaagctgcc atccaaggag acgacatgct ttcagcaact cctctgtatg ggaacgttca
     1141 cagctggatg aacagcgaga gggtccgcat gtgtggaaca agtgaagaca ggaaaattcc
     1201 tgtgaatgat ggcgatgctt caaaagccag gctggagctg agggaggaga atcccttgaa
     1261 tcacaacgtg gtggatacca gtggagccca tcggattgac ggcctggcag cactgagcat
     1321 ggatcgcaca ggcctcatcc gggaagggct ccgcgtccct ggaaacatcg tttattctgg
     1381 cttgtgtgga ttgggctcag aaaaaggtcg ggaggctacc ccaagctctc tcagtggcct
     1441 tgggttttct tcggaaagaa atccagagat gcaattcaaa ccgaatactc ctgagacagt
     1501 ggaggcttct gctgtctctg gaaaaccccc aaatggcttc agtgctatat acaaaacacc
     1561 acctgggata caaaaaagtg ctgtagccac agcagaaagc ttgggtttgg ataggcctgc
     1621 cagtgacaaa cagagccctc tcaacatcaa cggtgctagt tacctgcggc tgccctgggt
     1681 caacccttac atggaggggg ccactccagc catataccct ttcctcgact cgccaaataa
     1741 gtattcactg aacatgtaca aggccttgct acctcagcag tcctacggct tggcccagcc
     1801 gctgtattct cctgtctgca ccagtgggga acgcttcctc tacctgccac ccccacacta
     1861 tgtcaacccc cacatcccgt cctccttggc ttcgcccatg aggctctcta caccttcggc
     1921 ttctgcagcc attccacctc tcgtccactg ctcagacaaa agcctcccgt ggaagatggg
     1981 cgtcaaccct gggaacccag ttgattccca cacttatccc cacatccaaa atagtaagca
     2041 gccccgggtg acctctgcca aggcagtcaa tagtggcctg ccaggagacg cagctctcct
     2101 gttgcccccg tcacctcggc cttcaacccg ggtccacctt ccaactcagc ccgctgcaga
     2161 gtcctactcc gagttccaca agcactatcc caggatctcc acctccccct cagtcaccct
     2221 gacgaagcca tacatgacag ccagtagcga gttccccaca gccaggctgt ccagtggcaa
     2281 gtaccccaag gctctagatg ggggtgattg tgccccatcc atgtctgggc actcccggaa
     2341 gacaacggtt caagacagaa aagatggtgg ctcaccgcct ctgttggaaa agcagaccgt
     2401 taccaaagac gtcacagaca aaccgcttga cctgtcttct aaagtggtgg acgtggatac
     2461 ttctaaaacc gaccacatga aaaagatggc tcccacagtt ctggttcaca gtcgggctac
     2521 aagtggatta gtgctctctg gaagtgagat tccaaaagaa acatctcctc cgggaaatgg
     2581 ctgttctatc tatagatcag agatcatcag cactgccccc tcatcctggg tggtgccagg
     2641 gccaagtcct aatgaagaga acaatggcaa gagcctgtca ctgaaaaaca aggctttgga
     2701 ctgggcaata ccgcaacagc ggagttcctc gtgtccccgc atgggcggca cagatgctgt
     2761 gatcactaat gtttcaggtt ccgtgtccag ctcaggacgc ccagcctctg catcaccagc
     2821 ccccaacgcc aatgcagatg gcaccaagac cagcaggagc tctgtggata ccacgccatc
     2881 agtcatccag catgtgggcc agcccccatc cacgcctgcc aagcacagtg gcagcaccag
     2941 cagcaaggga gccaaagcca gcaacccaga accgagtttc aaagcgagtg agaatggcct
     3001 cccgccaacc tcaatatttc tatctccaaa tgaagcattc aggtccccac caattcccta
     3061 ccctaggagt tacctccctt acccagcacc agaaggcatc gctctaagtc ccctctctct
     3121 acatggcaaa ggaccggtgt atcctcaccc agttttgtta cccaatggca gtctgtttcc
     3181 tgggcatctt gcccccaagc ctggcctgcc ctatgggctg cacacaagcc ggccagaatt
     3241 tgtcacttac caagatgccc taggcctggg catggtacat cccatgttga tcccacacac
     3301 acccattgag atcacaaaag aggagaagcc ggagagacgg tcccgctccc atgagagagc
     3361 ccgttatgag gacccaaccc tccgtagccg gttttctgag atattggaag ccagcagcgc
     3421 caaactacat ccagacgtcc ccactgaaaa gaacctgaag ccaaacccta gctggaatca
     3481 agggaaaact ggggccaaaa gcgacaagct agtctacgta gaccttctcc gagaagaaac
     3541 agaggctaaa gctgatgcag gggcatccaa agcaggcctt gtagctgaga atgcgggtca
     3601 gaacacagat gccgccaagc cctcagctga ccccgtgatc cagcaacacc gtgaattcat
     3661 ctccctcaga gaggaactgg gccgaatcac tgacttccac gaatctttca ctttcaaaca
     3721 ggccccgggc cagccagtgt tcagcttagg caaggatagt gtggcagcag gaagcaacaa
     3781 ggagaacctg ggggtgcagg tagcaactcc attcttggag acagctctgg gcagcgaggg
     3841 ccctgctgtg acttttggga aaacccaaga ggatcccaaa ccattttgtg tgggcggtgc
     3901 ccctccaagc atggatgtca cccccgccta taccaaagat ggaaccgatg aggccgaatc
     3961 aaacgatggc aaagttctca aaccgaagcc atccaagctg gcaaaaagaa ttgctaactc
     4021 agcaggttat gtgggcgacc gattcaagtg tgtcaccacc gaactgtatg cagattctag
     4081 tcagctcagc cgagagcagc gggcattgca gatggaagga ttacaagagg acagtatttt
     4141 atgtctacct gctgcttact gtgagcgtgc aatgatgcgc ttctcagagt tggagatgaa
     4201 agagagagaa gttagccacc cagcaaccaa agactccgag gtgtgcaaat tcagcccagc
     4261 cgactgggaa aggttaaaag gaaatcagga gaagaagcca aagtcagtcg ccctggaaga
     4321 ggccattgcc gaccagaacg acactgagag atgtgactgt agtactggaa acaaacatga
     4381 tctctttgaa gccccagagg acaaagacct tcctgtggaa aagtatttct tggagaggcc
     4441 gcctgtgagt gagccaccca cggaccaggg ggtggtggac atgtcacaca gccccaccct
     4501 ccggctagac aggaaacgca aagcgtcagg tgacagcacc cacactgaga ccactgtgga
     4561 ggagctaact gaagaccctc tgaaagccaa gcggagacgg atctccaaag atgactggcc
     4621 tgagagggaa atgacaaaca gttcctctaa ccacttagaa gacccacatt gtaatgagct
     4681 gaccaacctg aaggtgtgca ttgaattaac agggctccat cctaaaaagc agcgccactt
     4741 gctgcacctt agagaacggt gggagcagca ggtgtcggca gccgagagca aacctggccg
     4801 gcaaagcagg aaggaagtga cccaggctgt gcagcctgag gtcacctccc aggggaataa
     4861 catcactgaa gagaggcctg gcaggaagaa ggcagaggcc aaaggcaaca gaggctggtc
     4921 tgaagagtcc ctcaaatcct gtgacaatga gcaaggcttg cctgtgttct ccgcctctcc
     4981 gcccatgaag agcctttcat ccaccaatgc aagtggcaaa aagcagactc agccaagctg
     5041 cacgccagcc tcgaggccgc ctgccaagca gcagaaaatt aaagaaagcc agaagacaga
     5101 tgtgctgtgc acagaggaag acgaggattg ccgggctgcc tccccgctgc aaaaatacac
     5161 agacaacatc gagaagccat ccgggaagag actgtgcaaa accaagcact tgatacctca
     5221 ggactccagg aggagtgtgc agatcacagg agaatactat gtggagaaca ctgacaccaa
     5281 gatgactgtg cggagattca gaaaacgacc tgagcccagc acggactatg atttgtcacc
     5341 accagccaag caggagccaa agccctttga ccgtttgcaa caattgctac cggccaccca
     5401 ggccacacag ctgccacgct caaattctcc tcaagagacc acccagtctc gccccatgcc
     5461 gccagaagct cggagactta ttgtcaataa gaatgctggc gagaccctcc ttcagcgggc
     5521 tgcccgctta ggctatgagg aagtggtctt atattgcctg gagaacaagg tctgtgatgt
     5581 caatcatcga gataatgctg gttactgtgc tctgcacgaa gcttgtgcca ggggatggct
     5641 caacatcgtg cgccacctcc ttgaatatgg cgctgatgtc aactgcagtg cccaggatgg
     5701 aaccaggcct ttgcatgatg ccgtggagaa tgaccactta gaaatcgtcc gattgcttct
     5761 ttcctatggt gctgacccta ctttggccac atactcaggg agaaccatca tgaaaatgac
     5821 ccacagtgaa cttatggaga agtttttaac agactattta aatgacctgc agggtcgcag
     5881 tgaggaggac accagtggcg cttgggagtt ctatggcagc tctgtgtgtg aaccagatga
     5941 cgaaagcggg tatgatgttt tggctaaccc cccaggaccc gaagacccag atgaggagga
     6001 ggatgcctat agtgacatgt ttgagtttga gtttgcggag agctccctct tgccgtgtta
     6061 taacatccaa gtgtccgtcg ctcaggggcc acgaaactgg ctactgctct cagacgtgct
     6121 caagaagttg aaaatgtcct cccggatatt ccgttgcaat tttcccaata tggaaattgt
     6181 cagcattgca gaggcagagt tttaccgaca ggtctctacg agtctcttat tctcctgccc
     6241 caaagacctg gaagccttta accctgaagg caaggagctg ttggatctgg tggaattcac
     6301 caatgagctc cagacactgc tgggctcctc cgtggagtgg ctccacccta gtgacacggg
     6361 ccatgaaaac tactggtgag ccacctgccc tgtgtacagt gtgttatagt gttaatcctt
     6421 gtgcatatgt gtcataatac aacaatttct gtaaagaaag gacactatta catatgaaaa
     6481 tatctcttct ttatataaga gaagttactc cagtcagaag aacctagaag cccgtgtttt
     6541 ctttcgaaac tttaaagtca gtttttatga agctgttaag atgtctttat ttttcagtgc
     6601 acacatgctt tgagatgtac gttcgttttt acttggaaca tttttctttt ctgttctttt
     6661 ctaaggagaa aaaaataaat gactaaatga aaagga
//
