LOCUS       XM_039099763            7048 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BCL6 co-repressor (Bcor), transcript
            variant X5, mRNA.
ACCESSION   XM_039099763
VERSION     XM_039099763.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099763.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7048
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7048
                     /gene="Bcor"
                     /gene_synonym="RGD1562735"
                     /note="BCL6 co-repressor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 12 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 55 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:317346"
                     /db_xref="RGD:1562735"
     CDS             1458..6731
                     /gene="Bcor"
                     /gene_synonym="RGD1562735"
                     /codon_start=1
                     /product="BCL-6 corepressor isoform X1"
                     /protein_id="XP_038955691.1"
                     /db_xref="GeneID:317346"
                     /db_xref="RGD:1562735"
                     /translation="MLSATPLYGNVHSWMNSERVRMCGTSEDRKIPVNDGDASKARLE
                     LREENPLNHNVVDTSGAHRIDGLAALSMDRTGLIREGLRVPGNIVYSGLCGLGSEKGR
                     EATPSSLSGLGFSSERNPEMQFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAV
                     ATAESLGLDRPASDKQSPLNINGASYLRLPWVNPYMEGATPAIYPFLDSPNKYSLNMY
                     KALLPQQSYGLAQPLYSPVCTSGERFLYLPPPHYVNPHIPSSLASPMRLSTPSASAAI
                     PPLVHCSDKSLPWKMGVNPGNPVDSHTYPHIQNSKQPRVTSAKAVNSGLPGDAALLLP
                     PSPRPSTRVHLPTQPAAESYSEFHKHYPRISTSPSVTLTKPYMTASSEFPTARLSSGK
                     YPKALDGGDCAPSMSGHSRKTTVQDRKDGGSPPLLEKQTVTKDVTDKPLDLSSKVVDV
                     DTSKTDHMKKMAPTVLVHSRATSGLVLSGSEIPKETSPPGNGCSIYRSEIISTAPSSW
                     VVPGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVITNVSGSVSSSGRP
                     ASASPAPNANADGTKTSRSSVDTTPSVIQHVGQPPSTPAKHSGSTSSKGAKASNPEPS
                     FKASENGLPPTSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIALSPLSLHGKGPVYPHP
                     VLLPNGSLFPGHLAPKPGLPYGLHTSRPEFVTYQDALGLGMVHPMLIPHTPIEITKEE
                     KPERRSRSHERARYEDPTLRSRFSEILEASSAKLHPDVPTEKNLKPNPSWNQGKTGAK
                     SDKLVYVDLLREETEAKADAGASKAGLVAENAGQNTDAAKPSADPVIQQHREFISLRE
                     ELGRITDFHESFTFKQAPGQPVFSLGKDSVAAGSNKENLGVQVATPFLETALGSEGPA
                     VTFGKTQEDPKPFCVGGAPPSMDVTPAYTKDGTDEAESNDGKVLKPKPSKLAKRIANS
                     AGYVGDRFKCVTTELYADSSQLSREQRALQMEGLQEDSILCLPAAYCERAMMRFSELE
                     MKEREVSHPATKDSEVCKFSPADWERLKGNQEKKPKSVALEEAIADQNDTERCDCSTG
                     NKHDLFEAPEDKDLPVEKYFLERPPVSEPPTDQGVVDMSHSPTLRLDRKRKASGDSTH
                     TETTVEELTEDPLKAKRRRISKDDWPEREMTNSSSNHLEDPHCNELTNLKVCIELTGL
                     HPKKQRHLLHLRERWEQQVSAAESKPGRQSRKEVTQAVQPEVTSQGNNITEERPGRKK
                     AEAKGNRGWSEESLKSCDNEQGLPVFSASPPMKSLSSTNASGKKQTQPSCTPASRPPA
                     KQQKIKESQKTDVLCTEEDEDCRAASPLQKYTDNIEKPSGKRLCKTKHLIPQDSRRSV
                     QITGEYYVENTDTKMTVRRFRKRPEPSTDYDLSPPAKQEPKPFDRLQQLLPATQATQL
                     PRSNSPQETTQSRPMPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNH
                     RDNAGYCALHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLL
                     SYGADPTLATYSGRTIMKMTHSELMEKFLTDYLNDLQGRSEEDTSGAWEFYGSSVCEP
                     DDESGYDVLANPPGPEDPDEEEDAYSDMFEFEFAESSLLPCYNIQVSVAQGPRNWLLL
                     SDVLKKLKMSSRIFRCNFPNMEIVSIAEAEFYRQVSTSLLFSCPKDLEAFNPEGKELL
                     DLVEFTNELQTLLGSSVEWLHPSDTGHENYW"
ORIGIN      
        1 aaaaaatgtg taggttagct ttcagaggca cccccctccg cccctcaaga aagaccagga
       61 agaaaaaggc gtgcattcca ttctgcaggc actggtcctg gaagccttgg cggcccagcc
      121 agcacagcta ggcactaccc gccggcctgc ctgtcttttg catcagttgt tacaagcagc
      181 tctggagcat gaagatttaa ttctgttcaa agtttcgggt ttcaaacggt agagatgttt
      241 cacttctgct ttgagaaggg ctgtttttat aagtatgctg agaactaaaa cagaatgaat
      301 aaaattgcac ctaatatcag tcccacagtc agtaatgggt gtcattttta aaagggaaaa
      361 tatcttctag ctagagatga gattttggcc ttgaccttga cttggtaatc aacttgagat
      421 gcttttgatt aatttttggc atgtagacgc tccaggatat ttaaaaactt tccgtgtggg
      481 tttactagcc acttccattt cggacttagg ttctcatcaa gcctgcatca tcctgttcct
      541 aggcagaaga catactccag cccatcccag aattgaaaga cccccataga agcaccgaat
      601 ggggtaacct tttggcctcg gtgtcagagc tcccagccag ggtgccctga cttcccttcc
      661 cgccagcttt atgaagtgaa gctgggtttg cccttgaggc tctgcgctcg ggggaggccg
      721 gaacctcgct tctcggcttc cccctttcgc ttgcctgccc ttcccccctc tggcgcccag
      781 agctgctcct ggtgcgtagg agaagctcga tacgtgtcaa ttgaattgaa ctgctgcggg
      841 cgcaggctgt acactgccgc cgagtcctga tctgcacgac gttaccgagt gaaaatttat
      901 gggctgaacg gtgaagccaa aagttgttcc cggccaagta aaataaaacg cgggagatac
      961 tctcacgagg ccgaggtgag agatgagggc agacctttca gccatcggag gtccgggccg
     1021 tgaaatgctc aaaaactggg agaaactcag gcgcatcccg gttcccttta cggtcctcct
     1081 acccccttgt gtccccggga acaccccccc acacacacac ctctacacaa ttcccacaca
     1141 attgaaatgt ccggggagca agggcgcgga actgccactg ttgcccgtgg tggtgttttc
     1201 acgtagctct taacgcctga aggggaagta gctcctctgg gaagaagggg cgaggtgcgg
     1261 tggggggtgg acgcccacgc gcactcaggc tttgctgggc tgggtctcgg aggggacgct
     1321 aggcccggag agcgcagcgc tggtggcgag aggaggcagt ggcgcctgcc gctggggttt
     1381 gacagctttg gctgagagga gtgcgaggcg ctttatgact agacgcctga aaccaagctg
     1441 ccatccaagg agacgacatg ctttcagcaa ctcctctgta tgggaacgtt cacagctgga
     1501 tgaacagcga gagggtccgc atgtgtggaa caagtgaaga caggaaaatt cctgtgaatg
     1561 atggcgatgc ttcaaaagcc aggctggagc tgagggagga gaatcccttg aatcacaacg
     1621 tggtggatac cagtggagcc catcggattg acggcctggc agcactgagc atggatcgca
     1681 caggcctcat ccgggaaggg ctccgcgtcc ctggaaacat cgtttattct ggcttgtgtg
     1741 gattgggctc agaaaaaggt cgggaggcta ccccaagctc tctcagtggc cttgggtttt
     1801 cttcggaaag aaatccagag atgcaattca aaccgaatac tcctgagaca gtggaggctt
     1861 ctgctgtctc tggaaaaccc ccaaatggct tcagtgctat atacaaaaca ccacctggga
     1921 tacaaaaaag tgctgtagcc acagcagaaa gcttgggttt ggataggcct gccagtgaca
     1981 aacagagccc tctcaacatc aacggtgcta gttacctgcg gctgccctgg gtcaaccctt
     2041 acatggaggg ggccactcca gccatatacc ctttcctcga ctcgccaaat aagtattcac
     2101 tgaacatgta caaggccttg ctacctcagc agtcctacgg cttggcccag ccgctgtatt
     2161 ctcctgtctg caccagtggg gaacgcttcc tctacctgcc acccccacac tatgtcaacc
     2221 cccacatccc gtcctccttg gcttcgccca tgaggctctc tacaccttcg gcttctgcag
     2281 ccattccacc tctcgtccac tgctcagaca aaagcctccc gtggaagatg ggcgtcaacc
     2341 ctgggaaccc agttgattcc cacacttatc cccacatcca aaatagtaag cagccccggg
     2401 tgacctctgc caaggcagtc aatagtggcc tgccaggaga cgcagctctc ctgttgcccc
     2461 cgtcacctcg gccttcaacc cgggtccacc ttccaactca gcccgctgca gagtcctact
     2521 ccgagttcca caagcactat cccaggatct ccacctcccc ctcagtcacc ctgacgaagc
     2581 catacatgac agccagtagc gagttcccca cagccaggct gtccagtggc aagtacccca
     2641 aggctctaga tgggggtgat tgtgccccat ccatgtctgg gcactcccgg aagacaacgg
     2701 ttcaagacag aaaagatggt ggctcaccgc ctctgttgga aaagcagacc gttaccaaag
     2761 acgtcacaga caaaccgctt gacctgtctt ctaaagtggt ggacgtggat acttctaaaa
     2821 ccgaccacat gaaaaagatg gctcccacag ttctggttca cagtcgggct acaagtggat
     2881 tagtgctctc tggaagtgag attccaaaag aaacatctcc tccgggaaat ggctgttcta
     2941 tctatagatc agagatcatc agcactgccc cctcatcctg ggtggtgcca gggccaagtc
     3001 ctaatgaaga gaacaatggc aagagcctgt cactgaaaaa caaggctttg gactgggcaa
     3061 taccgcaaca gcggagttcc tcgtgtcccc gcatgggcgg cacagatgct gtgatcacta
     3121 atgtttcagg ttccgtgtcc agctcaggac gcccagcctc tgcatcacca gcccccaacg
     3181 ccaatgcaga tggcaccaag accagcagga gctctgtgga taccacgcca tcagtcatcc
     3241 agcatgtggg ccagccccca tccacgcctg ccaagcacag tggcagcacc agcagcaagg
     3301 gagccaaagc cagcaaccca gaaccgagtt tcaaagcgag tgagaatggc ctcccgccaa
     3361 cctcaatatt tctatctcca aatgaagcat tcaggtcccc accaattccc taccctagga
     3421 gttacctccc ttacccagca ccagaaggca tcgctctaag tcccctctct ctacatggca
     3481 aaggaccggt gtatcctcac ccagttttgt tacccaatgg cagtctgttt cctgggcatc
     3541 ttgcccccaa gcctggcctg ccctatgggc tgcacacaag ccggccagaa tttgtcactt
     3601 accaagatgc cctaggcctg ggcatggtac atcccatgtt gatcccacac acacccattg
     3661 agatcacaaa agaggagaag ccggagagac ggtcccgctc ccatgagaga gcccgttatg
     3721 aggacccaac cctccgtagc cggttttctg agatattgga agccagcagc gccaaactac
     3781 atccagacgt ccccactgaa aagaacctga agccaaaccc tagctggaat caagggaaaa
     3841 ctggggccaa aagcgacaag ctagtctacg tagaccttct ccgagaagaa acagaggcta
     3901 aagctgatgc aggggcatcc aaagcaggcc ttgtagctga gaatgcgggt cagaacacag
     3961 atgccgccaa gccctcagct gaccccgtga tccagcaaca ccgtgaattc atctccctca
     4021 gagaggaact gggccgaatc actgacttcc acgaatcttt cactttcaaa caggccccgg
     4081 gccagccagt gttcagctta ggcaaggata gtgtggcagc aggaagcaac aaggagaacc
     4141 tgggggtgca ggtagcaact ccattcttgg agacagctct gggcagcgag ggccctgctg
     4201 tgacttttgg gaaaacccaa gaggatccca aaccattttg tgtgggcggt gcccctccaa
     4261 gcatggatgt cacccccgcc tataccaaag atggaaccga tgaggccgaa tcaaacgatg
     4321 gcaaagttct caaaccgaag ccatccaagc tggcaaaaag aattgctaac tcagcaggtt
     4381 atgtgggcga ccgattcaag tgtgtcacca ccgaactgta tgcagattct agtcagctca
     4441 gccgagagca gcgggcattg cagatggaag gattacaaga ggacagtatt ttatgtctac
     4501 ctgctgctta ctgtgagcgt gcaatgatgc gcttctcaga gttggagatg aaagagagag
     4561 aagttagcca cccagcaacc aaagactccg aggtgtgcaa attcagccca gccgactggg
     4621 aaaggttaaa aggaaatcag gagaagaagc caaagtcagt cgccctggaa gaggccattg
     4681 ccgaccagaa cgacactgag agatgtgact gtagtactgg aaacaaacat gatctctttg
     4741 aagccccaga ggacaaagac cttcctgtgg aaaagtattt cttggagagg ccgcctgtga
     4801 gtgagccacc cacggaccag ggggtggtgg acatgtcaca cagccccacc ctccggctag
     4861 acaggaaacg caaagcgtca ggtgacagca cccacactga gaccactgtg gaggagctaa
     4921 ctgaagaccc tctgaaagcc aagcggagac ggatctccaa agatgactgg cctgagaggg
     4981 aaatgacaaa cagttcctct aaccacttag aagacccaca ttgtaatgag ctgaccaacc
     5041 tgaaggtgtg cattgaatta acagggctcc atcctaaaaa gcagcgccac ttgctgcacc
     5101 ttagagaacg gtgggagcag caggtgtcgg cagccgagag caaacctggc cggcaaagca
     5161 ggaaggaagt gacccaggct gtgcagcctg aggtcacctc ccaggggaat aacatcactg
     5221 aagagaggcc tggcaggaag aaggcagagg ccaaaggcaa cagaggctgg tctgaagagt
     5281 ccctcaaatc ctgtgacaat gagcaaggct tgcctgtgtt ctccgcctct ccgcccatga
     5341 agagcctttc atccaccaat gcaagtggca aaaagcagac tcagccaagc tgcacgccag
     5401 cctcgaggcc gcctgccaag cagcagaaaa ttaaagaaag ccagaagaca gatgtgctgt
     5461 gcacagagga agacgaggat tgccgggctg cctccccgct gcaaaaatac acagacaaca
     5521 tcgagaagcc atccgggaag agactgtgca aaaccaagca cttgatacct caggactcca
     5581 ggaggagtgt gcagatcaca ggagaatact atgtggagaa cactgacacc aagatgactg
     5641 tgcggagatt cagaaaacga cctgagccca gcacggacta tgatttgtca ccaccagcca
     5701 agcaggagcc aaagcccttt gaccgtttgc aacaattgct accggccacc caggccacac
     5761 agctgccacg ctcaaattct cctcaagaga ccacccagtc tcgccccatg ccgccagaag
     5821 ctcggagact tattgtcaat aagaatgctg gcgagaccct ccttcagcgg gctgcccgct
     5881 taggctatga ggaagtggtc ttatattgcc tggagaacaa ggtctgtgat gtcaatcatc
     5941 gagataatgc tggttactgt gctctgcacg aagcttgtgc caggggatgg ctcaacatcg
     6001 tgcgccacct ccttgaatat ggcgctgatg tcaactgcag tgcccaggat ggaaccaggc
     6061 ctttgcatga tgccgtggag aatgaccact tagaaatcgt ccgattgctt ctttcctatg
     6121 gtgctgaccc tactttggcc acatactcag ggagaaccat catgaaaatg acccacagtg
     6181 aacttatgga gaagttttta acagactatt taaatgacct gcagggtcgc agtgaggagg
     6241 acaccagtgg cgcttgggag ttctatggca gctctgtgtg tgaaccagat gacgaaagcg
     6301 ggtatgatgt tttggctaac cccccaggac ccgaagaccc agatgaggag gaggatgcct
     6361 atagtgacat gtttgagttt gagtttgcgg agagctccct cttgccgtgt tataacatcc
     6421 aagtgtccgt cgctcagggg ccacgaaact ggctactgct ctcagacgtg ctcaagaagt
     6481 tgaaaatgtc ctcccggata ttccgttgca attttcccaa tatggaaatt gtcagcattg
     6541 cagaggcaga gttttaccga caggtctcta cgagtctctt attctcctgc cccaaagacc
     6601 tggaagcctt taaccctgaa ggcaaggagc tgttggatct ggtggaattc accaatgagc
     6661 tccagacact gctgggctcc tccgtggagt ggctccaccc tagtgacacg ggccatgaaa
     6721 actactggtg agccacctgc cctgtgtaca gtgtgttata gtgttaatcc ttgtgcatat
     6781 gtgtcataat acaacaattt ctgtaaagaa aggacactat tacatatgaa aatatctctt
     6841 ctttatataa gagaagttac tccagtcaga agaacctaga agcccgtgtt ttctttcgaa
     6901 actttaaagt cagtttttat gaagctgtta agatgtcttt atttttcagt gcacacatgc
     6961 tttgagatgt acgttcgttt ttacttggaa catttttctt ttctgttctt ttctaaggag
     7021 aaaaaaataa atgactaaat gaaaagga
//
