LOCUS       XM_039099760            5850 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BCL6 co-repressor (Bcor), transcript
            variant X2, mRNA.
ACCESSION   XM_039099760
VERSION     XM_039099760.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099760.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5850
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5850
                     /gene="Bcor"
                     /gene_synonym="RGD1562735"
                     /note="BCL6 co-repressor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 12 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 119
                     samples with support for all annotated introns"
                     /db_xref="GeneID:317346"
                     /db_xref="RGD:1562735"
     CDS             260..5533
                     /gene="Bcor"
                     /gene_synonym="RGD1562735"
                     /codon_start=1
                     /product="BCL-6 corepressor isoform X1"
                     /protein_id="XP_038955688.1"
                     /db_xref="GeneID:317346"
                     /db_xref="RGD:1562735"
                     /translation="MLSATPLYGNVHSWMNSERVRMCGTSEDRKIPVNDGDASKARLE
                     LREENPLNHNVVDTSGAHRIDGLAALSMDRTGLIREGLRVPGNIVYSGLCGLGSEKGR
                     EATPSSLSGLGFSSERNPEMQFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAV
                     ATAESLGLDRPASDKQSPLNINGASYLRLPWVNPYMEGATPAIYPFLDSPNKYSLNMY
                     KALLPQQSYGLAQPLYSPVCTSGERFLYLPPPHYVNPHIPSSLASPMRLSTPSASAAI
                     PPLVHCSDKSLPWKMGVNPGNPVDSHTYPHIQNSKQPRVTSAKAVNSGLPGDAALLLP
                     PSPRPSTRVHLPTQPAAESYSEFHKHYPRISTSPSVTLTKPYMTASSEFPTARLSSGK
                     YPKALDGGDCAPSMSGHSRKTTVQDRKDGGSPPLLEKQTVTKDVTDKPLDLSSKVVDV
                     DTSKTDHMKKMAPTVLVHSRATSGLVLSGSEIPKETSPPGNGCSIYRSEIISTAPSSW
                     VVPGPSPNEENNGKSLSLKNKALDWAIPQQRSSSCPRMGGTDAVITNVSGSVSSSGRP
                     ASASPAPNANADGTKTSRSSVDTTPSVIQHVGQPPSTPAKHSGSTSSKGAKASNPEPS
                     FKASENGLPPTSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIALSPLSLHGKGPVYPHP
                     VLLPNGSLFPGHLAPKPGLPYGLHTSRPEFVTYQDALGLGMVHPMLIPHTPIEITKEE
                     KPERRSRSHERARYEDPTLRSRFSEILEASSAKLHPDVPTEKNLKPNPSWNQGKTGAK
                     SDKLVYVDLLREETEAKADAGASKAGLVAENAGQNTDAAKPSADPVIQQHREFISLRE
                     ELGRITDFHESFTFKQAPGQPVFSLGKDSVAAGSNKENLGVQVATPFLETALGSEGPA
                     VTFGKTQEDPKPFCVGGAPPSMDVTPAYTKDGTDEAESNDGKVLKPKPSKLAKRIANS
                     AGYVGDRFKCVTTELYADSSQLSREQRALQMEGLQEDSILCLPAAYCERAMMRFSELE
                     MKEREVSHPATKDSEVCKFSPADWERLKGNQEKKPKSVALEEAIADQNDTERCDCSTG
                     NKHDLFEAPEDKDLPVEKYFLERPPVSEPPTDQGVVDMSHSPTLRLDRKRKASGDSTH
                     TETTVEELTEDPLKAKRRRISKDDWPEREMTNSSSNHLEDPHCNELTNLKVCIELTGL
                     HPKKQRHLLHLRERWEQQVSAAESKPGRQSRKEVTQAVQPEVTSQGNNITEERPGRKK
                     AEAKGNRGWSEESLKSCDNEQGLPVFSASPPMKSLSSTNASGKKQTQPSCTPASRPPA
                     KQQKIKESQKTDVLCTEEDEDCRAASPLQKYTDNIEKPSGKRLCKTKHLIPQDSRRSV
                     QITGEYYVENTDTKMTVRRFRKRPEPSTDYDLSPPAKQEPKPFDRLQQLLPATQATQL
                     PRSNSPQETTQSRPMPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKVCDVNH
                     RDNAGYCALHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLL
                     SYGADPTLATYSGRTIMKMTHSELMEKFLTDYLNDLQGRSEEDTSGAWEFYGSSVCEP
                     DDESGYDVLANPPGPEDPDEEEDAYSDMFEFEFAESSLLPCYNIQVSVAQGPRNWLLL
                     SDVLKKLKMSSRIFRCNFPNMEIVSIAEAEFYRQVSTSLLFSCPKDLEAFNPEGKELL
                     DLVEFTNELQTLLGSSVEWLHPSDTGHENYW"
ORIGIN      
        1 gcgcggctac tcgggtttcc ctagggccgc cggatagtct aaaactcact tcggaggact
       61 ggaaagagcg tgaagtggct ctttcgatct gagacacccc ctcccggaga catcaccccc
      121 tcctcccagc caggcgagga gtgaaatctt agaagccgag gctgctgggt ttgaacggaa
      181 tgccggagtc ggtggaagtc ggagctagtc cccccgaaga ctagacgcct gaaaccaagc
      241 tgccatccaa ggagacgaca tgctttcagc aactcctctg tatgggaacg ttcacagctg
      301 gatgaacagc gagagggtcc gcatgtgtgg aacaagtgaa gacaggaaaa ttcctgtgaa
      361 tgatggcgat gcttcaaaag ccaggctgga gctgagggag gagaatccct tgaatcacaa
      421 cgtggtggat accagtggag cccatcggat tgacggcctg gcagcactga gcatggatcg
      481 cacaggcctc atccgggaag ggctccgcgt ccctggaaac atcgtttatt ctggcttgtg
      541 tggattgggc tcagaaaaag gtcgggaggc taccccaagc tctctcagtg gccttgggtt
      601 ttcttcggaa agaaatccag agatgcaatt caaaccgaat actcctgaga cagtggaggc
      661 ttctgctgtc tctggaaaac ccccaaatgg cttcagtgct atatacaaaa caccacctgg
      721 gatacaaaaa agtgctgtag ccacagcaga aagcttgggt ttggataggc ctgccagtga
      781 caaacagagc cctctcaaca tcaacggtgc tagttacctg cggctgccct gggtcaaccc
      841 ttacatggag ggggccactc cagccatata ccctttcctc gactcgccaa ataagtattc
      901 actgaacatg tacaaggcct tgctacctca gcagtcctac ggcttggccc agccgctgta
      961 ttctcctgtc tgcaccagtg gggaacgctt cctctacctg ccacccccac actatgtcaa
     1021 cccccacatc ccgtcctcct tggcttcgcc catgaggctc tctacacctt cggcttctgc
     1081 agccattcca cctctcgtcc actgctcaga caaaagcctc ccgtggaaga tgggcgtcaa
     1141 ccctgggaac ccagttgatt cccacactta tccccacatc caaaatagta agcagccccg
     1201 ggtgacctct gccaaggcag tcaatagtgg cctgccagga gacgcagctc tcctgttgcc
     1261 cccgtcacct cggccttcaa cccgggtcca ccttccaact cagcccgctg cagagtccta
     1321 ctccgagttc cacaagcact atcccaggat ctccacctcc ccctcagtca ccctgacgaa
     1381 gccatacatg acagccagta gcgagttccc cacagccagg ctgtccagtg gcaagtaccc
     1441 caaggctcta gatgggggtg attgtgcccc atccatgtct gggcactccc ggaagacaac
     1501 ggttcaagac agaaaagatg gtggctcacc gcctctgttg gaaaagcaga ccgttaccaa
     1561 agacgtcaca gacaaaccgc ttgacctgtc ttctaaagtg gtggacgtgg atacttctaa
     1621 aaccgaccac atgaaaaaga tggctcccac agttctggtt cacagtcggg ctacaagtgg
     1681 attagtgctc tctggaagtg agattccaaa agaaacatct cctccgggaa atggctgttc
     1741 tatctataga tcagagatca tcagcactgc cccctcatcc tgggtggtgc cagggccaag
     1801 tcctaatgaa gagaacaatg gcaagagcct gtcactgaaa aacaaggctt tggactgggc
     1861 aataccgcaa cagcggagtt cctcgtgtcc ccgcatgggc ggcacagatg ctgtgatcac
     1921 taatgtttca ggttccgtgt ccagctcagg acgcccagcc tctgcatcac cagcccccaa
     1981 cgccaatgca gatggcacca agaccagcag gagctctgtg gataccacgc catcagtcat
     2041 ccagcatgtg ggccagcccc catccacgcc tgccaagcac agtggcagca ccagcagcaa
     2101 gggagccaaa gccagcaacc cagaaccgag tttcaaagcg agtgagaatg gcctcccgcc
     2161 aacctcaata tttctatctc caaatgaagc attcaggtcc ccaccaattc cctaccctag
     2221 gagttacctc ccttacccag caccagaagg catcgctcta agtcccctct ctctacatgg
     2281 caaaggaccg gtgtatcctc acccagtttt gttacccaat ggcagtctgt ttcctgggca
     2341 tcttgccccc aagcctggcc tgccctatgg gctgcacaca agccggccag aatttgtcac
     2401 ttaccaagat gccctaggcc tgggcatggt acatcccatg ttgatcccac acacacccat
     2461 tgagatcaca aaagaggaga agccggagag acggtcccgc tcccatgaga gagcccgtta
     2521 tgaggaccca accctccgta gccggttttc tgagatattg gaagccagca gcgccaaact
     2581 acatccagac gtccccactg aaaagaacct gaagccaaac cctagctgga atcaagggaa
     2641 aactggggcc aaaagcgaca agctagtcta cgtagacctt ctccgagaag aaacagaggc
     2701 taaagctgat gcaggggcat ccaaagcagg ccttgtagct gagaatgcgg gtcagaacac
     2761 agatgccgcc aagccctcag ctgaccccgt gatccagcaa caccgtgaat tcatctccct
     2821 cagagaggaa ctgggccgaa tcactgactt ccacgaatct ttcactttca aacaggcccc
     2881 gggccagcca gtgttcagct taggcaagga tagtgtggca gcaggaagca acaaggagaa
     2941 cctgggggtg caggtagcaa ctccattctt ggagacagct ctgggcagcg agggccctgc
     3001 tgtgactttt gggaaaaccc aagaggatcc caaaccattt tgtgtgggcg gtgcccctcc
     3061 aagcatggat gtcacccccg cctataccaa agatggaacc gatgaggccg aatcaaacga
     3121 tggcaaagtt ctcaaaccga agccatccaa gctggcaaaa agaattgcta actcagcagg
     3181 ttatgtgggc gaccgattca agtgtgtcac caccgaactg tatgcagatt ctagtcagct
     3241 cagccgagag cagcgggcat tgcagatgga aggattacaa gaggacagta ttttatgtct
     3301 acctgctgct tactgtgagc gtgcaatgat gcgcttctca gagttggaga tgaaagagag
     3361 agaagttagc cacccagcaa ccaaagactc cgaggtgtgc aaattcagcc cagccgactg
     3421 ggaaaggtta aaaggaaatc aggagaagaa gccaaagtca gtcgccctgg aagaggccat
     3481 tgccgaccag aacgacactg agagatgtga ctgtagtact ggaaacaaac atgatctctt
     3541 tgaagcccca gaggacaaag accttcctgt ggaaaagtat ttcttggaga ggccgcctgt
     3601 gagtgagcca cccacggacc agggggtggt ggacatgtca cacagcccca ccctccggct
     3661 agacaggaaa cgcaaagcgt caggtgacag cacccacact gagaccactg tggaggagct
     3721 aactgaagac cctctgaaag ccaagcggag acggatctcc aaagatgact ggcctgagag
     3781 ggaaatgaca aacagttcct ctaaccactt agaagaccca cattgtaatg agctgaccaa
     3841 cctgaaggtg tgcattgaat taacagggct ccatcctaaa aagcagcgcc acttgctgca
     3901 ccttagagaa cggtgggagc agcaggtgtc ggcagccgag agcaaacctg gccggcaaag
     3961 caggaaggaa gtgacccagg ctgtgcagcc tgaggtcacc tcccagggga ataacatcac
     4021 tgaagagagg cctggcagga agaaggcaga ggccaaaggc aacagaggct ggtctgaaga
     4081 gtccctcaaa tcctgtgaca atgagcaagg cttgcctgtg ttctccgcct ctccgcccat
     4141 gaagagcctt tcatccacca atgcaagtgg caaaaagcag actcagccaa gctgcacgcc
     4201 agcctcgagg ccgcctgcca agcagcagaa aattaaagaa agccagaaga cagatgtgct
     4261 gtgcacagag gaagacgagg attgccgggc tgcctccccg ctgcaaaaat acacagacaa
     4321 catcgagaag ccatccggga agagactgtg caaaaccaag cacttgatac ctcaggactc
     4381 caggaggagt gtgcagatca caggagaata ctatgtggag aacactgaca ccaagatgac
     4441 tgtgcggaga ttcagaaaac gacctgagcc cagcacggac tatgatttgt caccaccagc
     4501 caagcaggag ccaaagccct ttgaccgttt gcaacaattg ctaccggcca cccaggccac
     4561 acagctgcca cgctcaaatt ctcctcaaga gaccacccag tctcgcccca tgccgccaga
     4621 agctcggaga cttattgtca ataagaatgc tggcgagacc ctccttcagc gggctgcccg
     4681 cttaggctat gaggaagtgg tcttatattg cctggagaac aaggtctgtg atgtcaatca
     4741 tcgagataat gctggttact gtgctctgca cgaagcttgt gccaggggat ggctcaacat
     4801 cgtgcgccac ctccttgaat atggcgctga tgtcaactgc agtgcccagg atggaaccag
     4861 gcctttgcat gatgccgtgg agaatgacca cttagaaatc gtccgattgc ttctttccta
     4921 tggtgctgac cctactttgg ccacatactc agggagaacc atcatgaaaa tgacccacag
     4981 tgaacttatg gagaagtttt taacagacta tttaaatgac ctgcagggtc gcagtgagga
     5041 ggacaccagt ggcgcttggg agttctatgg cagctctgtg tgtgaaccag atgacgaaag
     5101 cgggtatgat gttttggcta accccccagg acccgaagac ccagatgagg aggaggatgc
     5161 ctatagtgac atgtttgagt ttgagtttgc ggagagctcc ctcttgccgt gttataacat
     5221 ccaagtgtcc gtcgctcagg ggccacgaaa ctggctactg ctctcagacg tgctcaagaa
     5281 gttgaaaatg tcctcccgga tattccgttg caattttccc aatatggaaa ttgtcagcat
     5341 tgcagaggca gagttttacc gacaggtctc tacgagtctc ttattctcct gccccaaaga
     5401 cctggaagcc tttaaccctg aaggcaagga gctgttggat ctggtggaat tcaccaatga
     5461 gctccagaca ctgctgggct cctccgtgga gtggctccac cctagtgaca cgggccatga
     5521 aaactactgg tgagccacct gccctgtgta cagtgtgtta tagtgttaat ccttgtgcat
     5581 atgtgtcata atacaacaat ttctgtaaag aaaggacact attacatatg aaaatatctc
     5641 ttctttatat aagagaagtt actccagtca gaagaaccta gaagcccgtg ttttctttcg
     5701 aaactttaaa gtcagttttt atgaagctgt taagatgtct ttatttttca gtgcacacat
     5761 gctttgagat gtacgttcgt ttttacttgg aacatttttc ttttctgttc ttttctaagg
     5821 agaaaaaaat aaatgactaa atgaaaagga
//
