LOCUS       NM_001127568            2723 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus BCLAF1 and THRAP3 family member 3 (Bclaf3), mRNA.
ACCESSION   NM_001127568 XM_001054543 XM_576964
VERSION     NM_001127568.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2723)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2723)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166438.1.
            
            On or before May 23, 2008 this sequence version replaced
            XM_576964.2, XM_001054543.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166438.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2723
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq14"
     gene            1..2723
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /note="BCLAF1 and THRAP3 family member 3"
                     /db_xref="GeneID:501559"
                     /db_xref="RGD:1562161"
     exon            1..100
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            101..169
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..2363
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /note="uncharacterized protein CXorf23 homolog"
                     /codon_start=1
                     /product="BCLAF1 and THRAP3 family member 3"
                     /protein_id="NP_001121040.1"
                     /db_xref="GeneID:501559"
                     /db_xref="RGD:1562161"
                     /translation="MARSRSRSPRWKQRSLSPQSRNFEYHEERHFHGHYDPEYRNDPQ
                     RPFTWRMDDEKHGQNKPRIPPRVNSYYRSYENRSPSPNVKPVEKFDTYKPHQEYFPGR
                     GDDDRRSQYMPTYTENAAAYMEHERDCYIPTVQGRYTDEHRGRGNGRGGKPPQMLLGM
                     PPQMSLADSFRFKETWHEDELRHQRVPEESFPQSPRRGSEDFDTRNPFQKRYPEDHDF
                     RKYGYISKRPTDAARYENREPARNPKWKPEHSFLPFQEKAEDWSFGTQSYRYTEREYP
                     ERSAATRVSYDYRHKHHKLSDGEQDFADGRFQKYLKEEDRKYSSLKIPGNRESDCFST
                     IRGRETENEQINGPFYLYQKDCVSYTHTNIKETDLASCNDKWKKKTNKEDCRKENASS
                     SKQLDTGPKPEDKCYSLTKKKSLTIKVDRNKMDTFRSTRYSAERQTSHDLVAIGSRND
                     NFHPVFQHLDSTQNPEDKPTEEFAQEIITIIHKVKADSFVTPEITLHERFSRIKNKMY
                     ADFNQMQSNSDPEFHRRIDMSLADLQNKYTMVYEPDKTVVKVIEPNDLRHDIERRRKE
                     RLQNEDENIFHMASSTERIHQSSSFPKVKTIRADGFQKPPHFIKSNFRKFIQKPYINY
                     TMQRKDAITQKIFRIEENHQNRRGSKGPFKNFLGGRFQPNYKSHLVQKSLYIQAKYQR
                     LRFAGPRGFITNKFRNRFLRKKKEYPILPRTNHLELLQMESTLYEDLTEHLILSGIGL
                     TLRH"
     exon            170..760
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            761..1411
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            1412..1584
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            1585..1699
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            1700..1763
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            1764..1879
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..1994
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            1995..2090
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            2091..2243
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
     exon            2244..2685
                     /gene="Bclaf3"
                     /gene_synonym="RGD1562161"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggagctga gcgaggggct aggccttgag ggagcggcgg cggctgtggt gtcggagcct
       61 tgggcgacag cgacggctat ggtgacaact tccctgaggg tgtaaaaagt ggatcaggtg
      121 gctaaaggat ggcacggtca cggtccagat cccccaggtg gaaacagagg tcattatcac
      181 cacaatctag aaattttgaa taccacgagg aaagacattt ccatgggcac tatgaccctg
      241 aatatagaaa tgatccacaa agacccttta cttggagaat ggatgatgag aaacatggac
      301 aaaataaacc aaggattccc cctcgtgtga attcctatta tcggtcttat gaaaatagat
      361 caccttcccc aaatgtaaaa cctgttgaaa aatttgatac atataagcct caccaagaat
      421 attttcctgg aagaggagat gatgacagaa gatctcagta tatgcccaca tacacagaaa
      481 atgcagcagc gtacatggag catgaaaggg attgttatat tcctacagtg caaggaagat
      541 atactgatga gcacagaggt agaggaaatg ggagaggagg gaagccacct cagatgttac
      601 tggggatgcc acctcagatg tcactggcag attcctttag atttaaagag acatggcatg
      661 aagatgaatt gagacaccaa agggtaccag aagaaagctt ccctcagtca cccagaagag
      721 gctcagaaga ctttgacaca aggaaccctt ttcagaagag gtatccagag gatcatgatt
      781 tcagaaagta tggctacata tcaaaaagac ctacagatgc agcaaggtat gaaaatagag
      841 agccagccag aaacccaaag tggaagcctg agcattcttt tctacctttc caagaaaagg
      901 cagaagactg gagctttgga acccaaagtt acagatatac tgagagagaa tacccagaga
      961 gaagtgcagc aacgagagta tcctatgact accgtcacaa acatcataag ctctcagatg
     1021 gtgagcagga ctttgctgat gggagatttc agaagtactt gaaggaagaa gacagaaaat
     1081 acagttctct aaaaattcct ggaaatagag agtcagattg tttcagtact ataagaggaa
     1141 gagaaactga gaatgagcaa atcaatggac ctttttatct ctaccagaaa gactgtgttt
     1201 cctatactca tacaaatata aaggagactg atttggcgtc ttgcaatgac aaatggaaga
     1261 aaaaaacaaa taaagaagat tgcagaaaag agaatgcatc ttctagtaaa caacttgata
     1321 caggcccaaa acctgaagac aaatgctatt cgcttaccaa gaagaaatca cttaccatca
     1381 aagtagacag gaacaagatg gacacattta ggtctactag atattctgca gagagacaga
     1441 catcacacga cttggttgcc attggcagca gaaatgataa ttttcatcca gtatttcaac
     1501 atcttgactc aactcagaat cctgaagaca aacctacaga agaatttgct caggaaatca
     1561 taacaataat tcacaaagtt aaagcagata gttttgtaac acctgagatt actctacacg
     1621 agcgtttctc aagaataaaa aacaaaatgt atgcagattt caatcaaatg caatcaaatt
     1681 cagatccaga atttcacagg cgaatagata tgtctttggc tgatcttcaa aataaatata
     1741 ctatggtgta tgaaccagat aagactgtgg tcaaagtaat agaaccaaat gatctacgac
     1801 atgacattga gaggaggaga aaagagcgat tacagaatga agatgagaat atttttcaca
     1861 tggctagttc tacagagagg attcatcagt cttccagttt tccaaaggtg aagactattc
     1921 gtgctgatgg atttcaaaag cctccacatt ttataaaatc aaattttaga aaatttattc
     1981 agaaacctta cataaactat actatgcaga gaaaagatgc cattactcag aagatattta
     2041 gaattgagga aaatcatcaa aacagaagag gctctaaagg accttttaag aactttttag
     2101 gtggcagatt ccagcccaat tataaatcac acctggtaca gaagagcttg tatattcagg
     2161 ccaaatacca gcgtttacga tttgctggac caaggggatt tattaccaat aaattcagga
     2221 acagatttct gaggaaaaaa aaggaatacc cgatattgcc aaggacaaac cacctcgaat
     2281 tgttgcagat ggagtcaaca ctatatgagg acttaactga gcatctcatt ttgtcaggaa
     2341 ttggattgac actaagacac taatactgta actttcttga taaaatatct ttatttttca
     2401 gtagtagaat gctgcaactt ttttacactc aacaatcact gttaatcaca gtattcaatt
     2461 tcaaaagttg tatttaacta caagctcttt tgcaaaaatt ctcagcagat gcattcgacg
     2521 ggcattattt gttgatgcat ctttctctca gcatggtttc actgagagag tttaattgag
     2581 ttacatgtga aggtttatat gttgaaagct ttgtgttata agaacaggta tcagaattat
     2641 ttagtgtctg tatattagag aactttaaac agtggcctta cagtaaaaaa aaaaaaaaaa
     2701 aaaaaaaaaa aaaaaaaaaa aaa
//
