LOCUS       XM_039089504            1720 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus branched chain amino acid transaminase
            2 (Bcat2), transcript variant X1, mRNA.
ACCESSION   XM_039089504
VERSION     XM_039089504.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089504.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1720
                     /gene="Bcat2"
                     /gene_synonym="Bcatm; BCT2; mBcat"
                     /note="branched chain amino acid transaminase 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 21 ESTs, 13 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     71 samples with support for all annotated introns"
                     /db_xref="GeneID:64203"
                     /db_xref="RGD:68948"
     CDS             139..1365
                     /gene="Bcat2"
                     /gene_synonym="Bcatm; BCT2; mBcat"
                     /codon_start=1
                     /product="branched-chain-amino-acid aminotransferase,
                     mitochondrial isoform X1"
                     /protein_id="XP_038945432.1"
                     /db_xref="GeneID:64203"
                     /db_xref="RGD:68948"
                     /translation="MGRSRLWTLPRLGAGRSNFPTPQVWARKLLPIPWRLCVPGRCVS
                     SNFKAADLQVQVTREPQKKPAPSQPLLFGKTFTDHMLMVEWNSKTGWGPPRIQPFQNL
                     TLHPACSGLHYSLQLFEGLKAYKGRDKQVRLFRPWLNMDRMLRSARRLCLPDFDKQEL
                     LECIRQLIEVDKDWVPDGNGTSLYVRPVLIGNEPSLGVGMVTQALLFVILCPVGSYFP
                     GDSMTPVSLLADPSFVRAWIGGVGDCKLGGNYGPTVAVQQEAQKKGCEQVLWLYGPDH
                     QLTEVGTMNIFVYWTHEDGELELATPPLDGIILPGVVRQSLLDLARTWGEFRVAERKV
                     TMKELKRALEEGRVREVFGSGTACQVCPVHQILYEGKQLHIPTMENGPELILRFQKEL
                     KAIQYGTSAHDWMLRV"
ORIGIN      
        1 ccagtgcggt agtgacagtg gctggcagaa gaatcctgag cgccatgcgg cgtcttagag
       61 ttgagacaag tgggtcagag ggaggaggct ggcatttgta ttgcttgttt tggggctgaa
      121 ggacaccgcg ggggtgtgat ggggaggagc aggctctgga cactccccag gttgggcgcg
      181 gggcgcagca acttccccac accccaggtc tgggcccgga agcttctgcc tattccctgg
      241 cgtctatgtg tgcccggaag atgtgtgtcc tccaacttca aggcggcaga cctccaggtt
      301 caggtgacca gagagccaca gaagaagcca gcccctagcc agcctctgct gtttgggaag
      361 acattcacgg accacatgct gatggtggag tggaacagca agacaggctg gggccctcca
      421 aggatccagc ccttccagaa cctcacactg cacccagcct gctccggcct gcactactca
      481 ttgcagctct ttgaaggctt gaaagcttat aaaggcagag acaagcaggt acgcctcttc
      541 cggccctggc tcaacatgga caggatgcta cgttctgcaa ggcgcctctg cctgccagac
      601 tttgacaagc aggaactgct ggagtgcatc cgccagctca ttgaagtaga caaagactgg
      661 gttcccgatg gcaatggaac aagcctctat gtgcggccgg tgcttattgg aaatgagccc
      721 tccctgggtg ttggaatggt cacacaagcc ctcctgttcg tcattctgtg ccctgtgggc
      781 tcctacttcc ccggagactc catgacacct gtctccctcc tggcggaccc ctcattcgtc
      841 agagcctgga ttggtggggt cggtgactgc aagttggggg ggaattacgg ccccactgtg
      901 gctgtgcaac aagaagccca gaagaaaggc tgcgagcagg tcctctggct gtacgggccg
      961 gaccaccagc tcaccgaggt gggaaccatg aacatctttg tctactggac tcatgaagac
     1021 ggagaactgg agctggcaac ccccccactg gatggcatca tcctccccgg agtggttcga
     1081 caaagcctgc tggatctggc caggacttgg ggtgagttcc gggtggcaga acgcaaggtc
     1141 actatgaagg aattgaagcg ggcactggag gagggccggg tgcgagaagt cttcggctca
     1201 ggcactgctt gtcaggtctg cccagtgcac caaatcctat atgaaggcaa gcaactccac
     1261 attcctacca tggaaaatgg gccggaactc atcctgcgct tccagaagga gttgaaggct
     1321 attcagtacg gaaccagtgc ccacgattgg atgcttcgtg tgtgacgtta gggaggttgt
     1381 gccctacctg gttggatccg ctgacgtgca gcatccagtt cagcgtcctc gcctcccaga
     1441 gactcaagag aagtgcaata gggaaaggtc gttccagact gctggctctc tggcaccctc
     1501 acgtggaagt tacactccaa agccttaagg gcgggaccca tgtaatttgg accccacctc
     1561 agttcagctg ctccgcgtcc tggtgttcaa gagagaacct tggcttcttc tcgatctccg
     1621 ttctcaggcc ggatccccgg tgctcttcat gtcttttttt tttttttttc cgtctctctc
     1681 tccttgctgc aattttgaaa taaaatgcca aagaacaaga
//
