LOCUS       XM_006229557            1294 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus B-cell receptor-associated protein 31
            (Bcap31), transcript variant X2, mRNA.
ACCESSION   XM_006229557
VERSION     XM_006229557.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229557.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006229557.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1294
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1294
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /note="B-cell receptor-associated protein 31; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 37 ESTs, 29 long SRA reads, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 172 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:293852"
                     /db_xref="RGD:1302944"
     CDS             176..913
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /codon_start=1
                     /product="B-cell receptor-associated protein 31 isoform
                     X1"
                     /protein_id="XP_006229619.1"
                     /db_xref="GeneID:293852"
                     /db_xref="RGD:1302944"
                     /translation="MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELV
                     VTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRN
                     LYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKG
                     TAEDGGKLDVGSPEMKLEENKILKTDLKKLKDELASTKKKLEKAENEALAMQKQSEGL
                     TKEYDRLLEEHAKLQASVRGPSDKKEE"
ORIGIN      
        1 gcatgtccgc gtaggctaga gaagcggcct tagccttccc gccaagtctc ctccaagctc
       61 cacccctgca tgtccgaagt gtcggaggcg aggcattcag ctgccaacct ctacttcctt
      121 tcaagacctt ggaaacaagc tcctatccat ctgttggaaa cctttaagtc acaggatgag
      181 tctgcagtgg actgcagttg ccaccttcct ctacgcagag gtctttgctg tgttgcttct
      241 ctgcattccc ttcatttctc ccaaaagatg gcagaagatt tttaaatctc ggctggttga
      301 gttggtagtg acctatggca acactttctt tgtggttctc atcgtcatcc ttgtgctgtt
      361 ggtcattgat gctgtacgtg agatccggaa atatgatgat gtaacagaaa aggtgaacct
      421 ccagaacaat ccaggtgcca tggagcactt ccacatgaag cttttccgtg ctcagaggaa
      481 tctctatatt gctggctttt ccttgctgct gtccttcctg cttagacgcc tggtgactct
      541 catctcccag caggccacac tgctggcctc caatgaagcc tttaaaaagc aggcagaaag
      601 tgccagtgag gcagccaaga aatacatgga ggagaatgat cagctaaaga agggaactgc
      661 tgaggatgga ggcaagttgg atgttgggag tcctgaaatg aagttagagg agaacaagat
      721 cctgaagact gatctgaaga agctaaaaga tgagctggcc agcaccaaga aaaaacttga
      781 gaaagctgaa aacgaggctc tggctatgca gaagcagtct gagggcctta ccaaagaata
      841 tgaccgtctg ctagaagagc acgccaagct gcaggcctca gtacgtggtc cctcagacaa
      901 gaaggaggag taaagacttg gtttttccct gcctgtagct ggcttatact tgacccatgc
      961 ttactgcttc cttggagccc agcctgtccc tctggtactt ggtttattcc cttccatttc
     1021 cccaattttc ttccatggct tatagatcat tttggcccca ttacacatac tactcttata
     1081 ccaaaaagga cctgattgtt gttcattcac agtaattttg ccactgttct gcctggccag
     1141 ggcactttcc actcctagaa gtgtagaaaa gcactggtga cctgggctgc acttgtactc
     1201 cattttattt tgccatgtat cctaaaagag gctgctgtta agcaggtcaa ctgttttatc
     1261 ctgaggggaa taaatgttgt tatgttacaa ggtg
//
