LOCUS       NM_001004224            1231 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus B-cell receptor-associated protein 31 (Bcap31),
            mRNA.
ACCESSION   NM_001004224 XM_215226
VERSION     NM_001004224.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1231)
  AUTHORS   Li,Y., Jain,N., Limpanawat,S., To,J., Quistgaard,E.M., Nordlund,P.,
            Thanabalu,T. and Torres,J.
  TITLE     Interaction between human BAP31 and respiratory syncytial virus
            small hydrophobic (SH) protein
  JOURNAL   Virology 482, 105-110 (2015)
   PUBMED   25854864
REFERENCE   2  (bases 1 to 1231)
  AUTHORS   Zhang,C., Kho,Y.S., Wang,Z., Chiang,Y.T., Ng,G.K., Shaw,P.C.,
            Wang,Y. and Qi,R.Z.
  TITLE     Transmembrane and coiled-coil domain family 1 is a novel protein of
            the endoplasmic reticulum
  JOURNAL   PLoS One 9 (1), e85206 (2014)
   PUBMED   24454821
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1231)
  AUTHORS   Cacciagli,P., Sutera-Sardo,J., Borges-Correia,A., Roux,J.C.,
            Dorboz,I., Desvignes,J.P., Badens,C., Delepine,M., Lathrop,M.,
            Cau,P., Levy,N., Girard,N., Sarda,P., Boespflug-Tanguy,O. and
            Villard,L.
  TITLE     Mutations in BCAP31 cause a severe X-linked phenotype with
            deafness, dystonia, and central hypomyelination and disorganize the
            Golgi apparatus
  JOURNAL   Am J Hum Genet 93 (3), 579-586 (2013)
   PUBMED   24011989
REFERENCE   4  (bases 1 to 1231)
  AUTHORS   Iwasawa,R., Mahul-Mellier,A.L., Datler,C., Pazarentzos,E. and
            Grimm,S.
  TITLE     Fis1 and Bap31 bridge the mitochondria-ER interface to establish a
            platform for apoptosis induction
  JOURNAL   EMBO J 30 (3), 556-568 (2011)
   PUBMED   21183955
REFERENCE   5  (bases 1 to 1231)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 1231)
  AUTHORS   Pang,A.L., Taylor,H.C., Johnson,W., Alexander,S., Chen,Y., Su,Y.A.,
            Li,X., Ravindranath,N., Dym,M., Rennert,O.M. and Chan,W.Y.
  TITLE     Identification of differentially expressed genes in mouse
            spermatogenesis
  JOURNAL   J Androl 24 (6), 899-911 (2003)
   PUBMED   14581517
REFERENCE   7  (bases 1 to 1231)
  AUTHORS   Bell,A.W., Ward,M.A., Blackstock,W.P., Freeman,H.N.,
            Choudhary,J.S., Lewis,A.P., Chotai,D., Fazel,A., Gushue,J.N.,
            Paiement,J., Palcy,S., Chevet,E., Lafreniere-Roula,M., Solari,R.,
            Thomas,D.Y., Rowley,A. and Bergeron,J.J.
  TITLE     Proteomics characterization of abundant Golgi membrane proteins
  JOURNAL   J Biol Chem 276 (7), 5152-5165 (2001)
   PUBMED   11042173
REFERENCE   8  (bases 1 to 1231)
  AUTHORS   Annaert,W.G., Becker,B., Kistner,U., Reth,M. and Jahn,R.
  TITLE     Export of cellubrevin from the endoplasmic reticulum is controlled
            by BAP31
  JOURNAL   J Cell Biol 139 (6), 1397-1410 (1997)
   PUBMED   9396746
REFERENCE   9  (bases 1 to 1231)
  AUTHORS   Li,E., Bestagno,M. and Burrone,O.
  TITLE     Molecular cloning and characterization of a transmembrane surface
            antigen in human cells
  JOURNAL   Eur J Biochem 238 (3), 631-638 (1996)
   PUBMED   8706661
REFERENCE   10 (bases 1 to 1231)
  AUTHORS   Adachi,T., Schamel,W.W., Kim,K.M., Watanabe,T., Becker,B.,
            Nielsen,P.J. and Reth,M.
  TITLE     The specificity of association of the IgD molecule with the
            accessory proteins BAP31/BAP29 lies in the IgD transmembrane
            sequence
  JOURNAL   EMBO J 15 (7), 1534-1541 (1996)
   PUBMED   8612576
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079182.1.
            
            On Sep 10, 2004 this sequence version replaced XM_215226.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079182.1, FQ219790.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676811 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq37"
     gene            1..1231
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /note="B-cell receptor-associated protein 31"
                     /db_xref="GeneID:293852"
                     /db_xref="RGD:1302944"
     exon            1..44
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
     exon            45..180
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..826
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /codon_start=1
                     /product="B-cell receptor-associated protein 31"
                     /protein_id="NP_001004224.1"
                     /db_xref="GeneID:293852"
                     /db_xref="RGD:1302944"
                     /translation="MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELV
                     VTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRN
                     LYIAGFSLLLSFLLRRLVTLISQQATLLASNEAFKKQAESASEAAKKYMEENDQLKKG
                     TAEDGGKLDVGSPEMKLEENKILKTDLKKLKDELASTKKKLEKAENEALAMQKQSEGL
                     TKEYDRLLEEHAKLQASVRGPSDKKEE"
     exon            181..281
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
     exon            282..429
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
     exon            430..565
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
     exon            566..686
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
     exon            687..787
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
     exon            788..1205
                     /gene="Bcap31"
                     /gene_synonym="Bap31"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtttggta gttgcagtgg ggcgtgcgcg taggctgaaa ctcggaaaca agctcctatc
       61 catctgttgg aaacctttaa gtcacaggat gagtctgcag tggactgcag ttgccacctt
      121 cctctacgca gaggtctttg ctgtgttgct tctctgcatt cccttcattt ctcccaaaag
      181 atggcagaag atttttaaat ctcggctggt tgagttggta gtgacctatg gcaacacttt
      241 ctttgtggtt ctcatcgtca tccttgtgct gttggtcatt gatgctgtac gtgagatccg
      301 gaaatatgat gatgtaacag aaaaggtgaa cctccagaac aatccaggtg ccatggagca
      361 cttccacatg aagcttttcc gtgctcagag gaatctctat attgctggct tttccttgct
      421 gctgtccttc ctgcttagac gcctggtgac tctcatctcc cagcaggcca cactgctggc
      481 ctccaatgaa gcctttaaaa agcaggcaga aagtgccagt gaggcagcca agaaatacat
      541 ggaggagaat gatcagctaa agaagggaac tgctgaggat ggaggcaagt tggatgttgg
      601 gagtcctgaa atgaagttag aggagaacaa gatcctgaag actgatctga agaagctaaa
      661 agatgagctg gccagcacca agaaaaaact tgagaaagct gaaaacgagg ctctggctat
      721 gcagaagcag tctgagggcc ttaccaaaga atatgaccgt ctgctagaag agcacgccaa
      781 gctgcaggcc tcagtacgtg gtccctcaga caagaaggag gagtaaagac ttggtttttc
      841 cctgcctgta gctggcttat acttgaccca tgcttactgc ttccttggag cccagcctgt
      901 ccctctggta cttggtttat tcccttccat ttccccaatt ttcttccatg gcttatagat
      961 cattttggcc ccattacaca tactactctt ataccaaaaa ggacctgatt gttgttcatt
     1021 cacagtaatt ttgccactgt tctgcctggc cagggcactt tccactccta gaagtgtaga
     1081 aaagcactgg tgacctgggc tgcacttgta ctccatttta ttttgccatg tatcctaaaa
     1141 gaggctgctg ttaagcaggt caactgtttt atcctgaggg gaataaatgt tgttatgtta
     1201 caaggaaaaa aaaaaaaaaa aaaaaaaaaa a
//
