LOCUS       XM_017598009            8924 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BBX high mobility group box domain
            containing (Bbx), transcript variant X11, mRNA.
ACCESSION   XM_017598009
VERSION     XM_017598009.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017598009.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017598009.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8924
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8924
                     /gene="Bbx"
                     /note="BBX high mobility group box domain containing;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 59 ESTs, 1 long SRA read, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:303970"
                     /db_xref="RGD:1309769"
     CDS             387..3203
                     /gene="Bbx"
                     /codon_start=1
                     /product="HMG box transcription factor BBX isoform X1"
                     /protein_id="XP_017453498.1"
                     /db_xref="GeneID:303970"
                     /db_xref="RGD:1309769"
                     /translation="MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEE
                     EDEEEEDIDKVQLVEADGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEH
                     PRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRWCPTTNKPVKSP
                     TPTVNPRKKLWAFPSDSSRDLPTAKKAKTEEVPQLNFGMADPTQMGGLSMLLLAGEHA
                     LGTPEASSGTCRPDISESPELRQKSPLFQFAEISSRTSHPDAPSKQCQASALFQFAEI
                     SSSTSQLGGTEPVKRCGNSALFQLAEMCLASEGVKMEGTELTKSKDSDGGRIEEMEKG
                     KEERDMKMEKTIETAFQAEAEFGKSAKGNIREPKDLRDIEQLQSDNVMAIKVEDPKDS
                     RKESDDDQKYSHFPDFSYSASSKIIISDVPSRKDHMCHPHGIMIIEDPTALNKPEKIK
                     KKKKKNKLDRHGNDRSTPKKACKKRQSSESDIESVMYTIEAVAKGDWGADRLGETPRK
                     KVRTSSSGKGGILDAKPPKKKVKSKEKKVSKEKCSDITKESRPPDFLNISASKSVPGE
                     VPESMKAEPLTPTEDALPPSLPGQAKPEDSDCHRKTETCGSRKSERSCKGALYKTLVS
                     EGMLTSLRANVDRGKRSSGKGNSSDHEGCWSEESWTFNQSGTSGSKKFKKKLREDSFL
                     GSAKLDEEFEKKFNSLPQYSPITFDRKCVSIPRKKKKTGNMSSESTKASKGPFQSQKK
                     NLFHKIVSKYKHKKEKPNVPEKGSGDKWSHKQFFLDAIHPTEAIFSEDKNTTEPAYKV
                     KNALSIPNTPEPTAMQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQL
                     QRRLPKVPETFCGDNCSHTTVEEPRSSTPEMPAVSAFFSLAALAEVAAMENVHRGQRS
                     TQLTHDGQPKEMPQAPVLISCADQ"
ORIGIN      
        1 caggtttttt gaaagtattg ttgatttggt tttctttggg ggggtggggg tggaaagcga
       61 ggaaaagatt tcttagaaaa gaagggggca ggctgaaaaa agcaaaacca tcatgaattg
      121 tgttgtcaca tcgtgccggt gtcacaacca gctcagtaga ctgctgcact gaaaacattt
      181 ctgtgagaga atcctgctgc atcacagaag ctggaagttc tgatgttcca ctgaaatcac
      241 aatgggaagt cttgacttga ctggcaccct caggaagacc ctaagcctct agcagatgat
      301 atcatctcca gcatgttata gatgtggagg atcccttggg atattgagaa ataccagagg
      361 cgaattgttc cactgtagtc acagtaatga aaggcagtaa tagaaataaa gatcattcag
      421 cagaaggaga aggggccgga aaacgaccaa aacggaagtg tcttcagtgg catccgttgc
      481 tagccaagaa acttctggac ttttcagaag aggaggagga agacgaggaa gaagaagata
      541 ttgataaagt tcaacttgtt gaggcggatg gcctagagca agatgttggt gagactgaag
      601 atgatgagtc accagagcag cgagcccgga gaccaatgaa tgcgtttctt ttattttgca
      661 agcgccatcg atcccttgtc cgacaggaac acccaaggct tgataaccga ggtgctacca
      721 agatactagc tgactggtgg gctgttcttg atccaaagga aaagcagaaa tatacagaca
      781 tggccaagga gtataaagat gcatttatga aagcaaatcc tggctacaga tggtgcccta
      841 ccacaaacaa gcccgtgaag tcgccaacac ccactgtcaa tccacggaag aaactctggg
      901 ccttcccatc tgactcctca agagacttgc caaccgctaa gaaggcaaag acagaagaag
      961 ttcctcagct taactttgga atggcagatc ctactcagat gggaggcctg agcatgttgc
     1021 tgctagctgg agaacatgct cttggaacgc cagaggcatc ctctgggact tgcaggcctg
     1081 atatttcaga gtcacctgag ttgcgtcaga agtcaccatt gtttcagttt gccgagatat
     1141 cctccaggac atcccacccc gatgctcctt caaaacagtg tcaagcatca gccttgtttc
     1201 agtttgcaga gatctcttca agcacttcgc agttgggtgg cactgagcct gtgaaacgct
     1261 gtggaaattc tgcactcttt caactggcag agatgtgcct ggcgtcagag ggcgtaaaaa
     1321 tggaaggcac agagctaacc aagtccaaag actccgacgg aggacgaatc gaggagatgg
     1381 aaaaggggaa ggaagagcga gacatgaaaa tggagaaaac cattgaaact gcgttccagg
     1441 cggaagcaga attcgggaag tcagcaaagg gcaacatcag agagcccaag gacttaagag
     1501 acattgaaca gctacagtcg gataacgtaa tggctatcaa agtggaagac cccaaagaca
     1561 gtagaaagga gtcagacgac gatcagaaat acagccactt ccctgatttt tcttactctg
     1621 ccagtagcaa gataataatt agtgatgtcc ccagtagaaa ggaccacatg tgccaccctc
     1681 acggaatcat gattattgag gaccccactg cactaaacaa accagaaaag ataaaaaaga
     1741 agaagaagaa aaacaaactg gatcgacatg gaaacgacag gtccaccccc aagaaggcct
     1801 gcaagaagag gcagtcttca gagtcggaca tcgagagtgt catgtacacc atcgaagcgg
     1861 tagcgaaggg agactggggt gctgacagac tcggagaaac cccaagaaag aaagtccgca
     1921 cctcctcaag tggcaagggg ggcattttgg atgccaagcc accaaagaaa aaagtgaaat
     1981 ccaaggagaa gaaggtttcc aaggagaagt gctcagacat caccaaagag tctcgacctc
     2041 cagatttcct taacatttct gccagcaaga gtgttcctgg ggaggtgcca gagagcatga
     2101 aagcagaacc cttgacgcct acagaggatg cactgccacc tagcctacca ggacaggcta
     2161 agcctgagga cagtgactgc cacagaaaaa cggagacctg tggctccagg aaatctgaga
     2221 ggtcttgcaa aggtgctctt tataaaaccc tggtgtccga gggcatgctc acctccctgc
     2281 gagctaatgt tgacagaggg aaacgaagct caggaaaagg aaactcctct gatcatgaag
     2341 ggtgttggag tgaagagagc tggacattta atcagagtgg gaccagtgga agcaagaagt
     2401 ttaaaaagaa gctaagggaa gactccttcc ttggttctgc aaagctggat gaggaatttg
     2461 aaaagaaatt caacagcctc cctcaatata gtcctattac atttgaccgg aaatgtgtat
     2521 ctattccaag gaaaaagaag aagactggaa acatgtcctc agaatcgact aaagccagca
     2581 aaggtccttt ccagtctcag aaaaagaact tattccacaa aattgtcagc aaatataagc
     2641 acaaaaagga gaagcctaat gttccagaaa aaggaagtgg ggataaatgg tcacacaagc
     2701 aatttttctt ggatgccatt caccctacag aagccatatt ttcagaagat aaaaacacca
     2761 cagagcctgc ttataaagtt aaaaatgccc tatccattcc caacactcca gagccaacag
     2821 caatgcaaga acctttggtg ggcagccaaa agagaaaagc aaggaaaacc aagatcacac
     2881 accttgtcag gactgcagat ggccgagtct caccagcagg aggtacactg gatgacaaac
     2941 caaaggagca gctgcagagg cgtctcccca aagtccccga gacattctgc ggtgataatt
     3001 gctcacacac tacggttgag gagccacgga gcagtactcc agaaatgcct gctgtgtctg
     3061 cattctttag tctcgctgca ctggctgagg ttgcagccat ggagaatgtg cacagaggtc
     3121 agaggtcaac tcaactcacc catgatggac agccaaaaga aatgccgcag gctcctgtac
     3181 ttatttcttg cgctgaccag tgacgcgccc tttaattgta aaacattgtg ctttaccttc
     3241 taccctagcc ttgtctttac cagggatgct agcgagtcca tgtggtggga agtacagact
     3301 gcagacaagg gcctgttgcc ccacacggcc cagaatcact tgaagcagaa cttagcattc
     3361 tgggcccatt tgttgtttca gaagccacag tttctgaggg cagtgttcct gtgtgatact
     3421 gagcaaaagc agagggaccc gcacctttgc tttgcgtgga ggaaggcttt tgatggtgac
     3481 cagtggtgac tcggtaaaag gctgccttcg ctgtagctca tccagcatct cttttaccag
     3541 ccagagagtg ggaaactagt ttcatatatt acctagttct tctttcaaaa caaacaagaa
     3601 aaccctgacg cactgcacta gttattatta gatattctta gtcttttgta catgaagatt
     3661 taagttctaa gatggtttat ataataggtt atacctacat ttatattgta gaataaatat
     3721 taaaaagcct gtaccagaga ctcccaagca gcacgggcag gcagacgtac cattgttagc
     3781 ggtgtatgct cggcctcatg gtccatatat tctgcacttt tatatttgcc accagagtgg
     3841 tagtggtagt ttgctggcag agagagagag agagagagag agagagagag agagagagag
     3901 agagagagag agcgagggga gagaggagga gaaaggagat attaattgag aaagagaata
     3961 ttacagttct tacaatctga atttttttct tagccttgag tgaccaagaa gaatttgctt
     4021 ggggcaaatt gtggcaaata ttttcccaga caggggaagc atcctgcaga ttacagatta
     4081 ctgatgtttc catgccttga ggattctttt atttttacac gggggtctaa gtgaccaatg
     4141 gatcgttcat ataaacaaac aaaaaaaaaa cagacaaaaa tattattcag aagtgacctt
     4201 agtattactt cattattcta accacattga agatgctcac ttcatatgga cttggagctt
     4261 cagacctttt acatccatca cagacagacc ggatgggttg tgattgctgt gcatggccta
     4321 ataggcactg caggctttag gagccatttg gagtttgtat cgttgaggga gtattgagta
     4381 aacgaggggg gaggtgtgtc tgaagtgcgc ctctcagtca gatccaccta caagtttctg
     4441 tttccttttt atgttttgtt gcttttaagc ataaagccaa ccatatgcca gtgccaagtg
     4501 gattaactgg cttacaacat tcaacatatt gacttaacca cctgatgttc acagtatctt
     4561 gtttcctagc aacagatgct aagtaataca tcaaaattaa tctgaggcta cagattttac
     4621 agggtatttg ttccatagca caaagtattt ccccactctt gcatcacagc acaaactacc
     4681 aaattttgat tttttttttt ttttagatcc cagcaataat ttttaatagt tttcaaactg
     4741 gtggaatttt gatagtgcta gctggagttt gaagcttttg aattagatct ctaaatggtg
     4801 acagtttaca tggttttatc tagctttctt atttatactt gactgaattg taattttttt
     4861 ctaattgtaa tctgacctaa tagccatata aaatgactct gttagtactg tctaggccta
     4921 gcttctcacg gttgtagata ttcagttccg gtgctggaaa atatgtacaa caatactaac
     4981 aggattgaaa aagatggagg tttgttttgt ttgttgtttt tccaaagcag gtagggagga
     5041 cagcaaagta ttagaattat gtcctcaaac gttatgttcg ttggggagga aggaagcagg
     5101 acttagtaac agttaatcag taggcggagc ttaaccccat tcacagagag agaaatcaag
     5161 tgacagcccc aggtcttagc gtactatttt tactatgata actgttttaa taatattttc
     5221 taaatttcaa aacataaaac cgaatgattg gaaattggtg ggtcctcacg ttggtggctg
     5281 ttggagtttt ggaccacttg ctagcagtga tttaaacatg ataattagct aaccccctcc
     5341 aaaaaaaata ataacaaaaa tagaaaacca acaattgcat tggtgcagaa catgcatctt
     5401 gacaatggta ctaacttgtt attctctaga acacattaga atagatctat ttttgccaga
     5461 gcaccctccc tccgtcctcc aatacatttc actagagtcc tttaagagat tgctgtatat
     5521 tcctgagacc ttttttaaaa aaaaaaaaaa agaagaagaa gaagaagaag caaatgagat
     5581 aacttttttc tacgtggtta atatcttacc tggtctgctt ttcctaaacc ccagtggctt
     5641 ttactttagt cggggtggga atgggaggga cttactggat atgactgttt tcagattctt
     5701 taaaaacaaa ccttttttag aaatgcttaa tttttaagcg gttaggcact gagagtagca
     5761 gaaatcctgc aaagctttat agttctctga gtgaggtctt gatttcagta gctgtgctta
     5821 tgccccggat ctgctggaga ggggtgttgg tattttcagg taacatttgt tagcacaaat
     5881 ctttcggtcc gttacactgt tcttcaccct atccgtgtcg tcatcttcat ttcgtctctc
     5941 tttctggaaa ctgatgttgc tgtgtcgctc tgacgtgtcc tcgtgatctg ctggcaagca
     6001 ccatctacac taatattcgt ctcacggcga atagcctcaa gcaaacaagt tgttgcacct
     6061 tatgtatatc tcaagcaaac caaaatgcag tgttctgctt tgttctgttc taaatcactg
     6121 tagcatatct ttctgaaacc atttttgcat ttagttgaaa ttgtcaatat ttatgctttt
     6181 aaccttcatt tctggattca aacctgtata taaaactttt gaaagtcatc cttgcccttc
     6241 tctgcagggc tggaagtgga agggtctgcc tcaggtgcag acgtagtact cttccaggtt
     6301 tctttagccc tttatttatt ttaggtattg tggtatttcc aatgtaattt tgaagtatct
     6361 agagtatatt atagtaacta aatctgcagc tctgaagctg agtgaaagaa aaatactgta
     6421 aggtgtcctt caagttctgt ttgggtactg taaacgtccc acagccacgt cggaagctac
     6481 aggttcttgt ccccaaatta ggttagtctc agatggtgaa tcaaaactct aaattcattc
     6541 agccccttct tgagtgatga tgtgatcctg gcagcctctt ccccacaagt gtcagggaca
     6601 gttttatcag atgttgcctg gaagccatac tgaatagttc ccacacgatc attgttgtgc
     6661 tacttccggt ccttacactc actagagaag aatgatggca gcactgtgag tggaaaggag
     6721 caaggagcat ctgcaccgtc gggggtggag cctggcatgt tgaatccctt gttttcttac
     6781 taagtcagat gctttgctaa gtcagaaaaa atgtgtctgc actctgcagt ctttggctca
     6841 gtaaactacc aagcacatta taaattgcta tggaacagac attagctgaa aactgaataa
     6901 cgtgttttgt ttatagggtg gggtggggaa tactgcataa ctctgttcaa agcttggcat
     6961 ttgatgttaa tgtgaagcag taggaccatg ctgcctgcta aactactgta tgcatcctaa
     7021 gtgttctgaa gaccagcagc tggaggctgc aggacagcag ccattcaaga gaggagaagc
     7081 accactggct tatcagggga gaggaagaga atcagaggcg gcccagagtc accatgtgta
     7141 agggcagtgt tggggtggac atgatgctgt tgagaaccac ctttgattgc actgctccac
     7201 ggagccctca gataaggcca atcctcatgg gctacctcgg ctttcaagtc agtttcagtc
     7261 tgtctttcgc ctctgctttc agtgccacga ttttccactg cagtgttccg acttcacaaa
     7321 accgacttct ccagagagaa caacgccttg cggtgatggg cagtaggagc aagtgcttat
     7381 cacatttgac ctgtagaagt gtttggagtg acagctagat ggaaatggat ttagcttctc
     7441 cccacacatc cttattttgc actttatgca aagtgtacta attgctaatt agatgtcatt
     7501 tctgtttata caggcattcc caaagagtta gactggactt ggttttgagt ttggggattg
     7561 ttaaagtctt acttagatta actaacaaca tgtgtgtaat gaaaacgaaa gcatctgtgt
     7621 agttcatgga accgtgtgtc tgatgaagcg tcagggtttg atggactact ttgcttgtgt
     7681 ttggaagtga tagctaagtt ggttatactc catgccgagt gactgtcctt tttccttggg
     7741 gacatcgtta ccttcttaca tttcagaaca aagaagcaac aagtaaatga cagatgtttg
     7801 acttctttgt atatctgcac ctatctgtgc taccctttcc ttcaaatata taaatacaca
     7861 tttatgaggg aggaaaaggt tcctcttttg accaaatttt atatgtggtg gtgtgatttt
     7921 tactgataaa ttcacaggag gaactttgta gtcaaaagtt ctgtggctac tgttttgttt
     7981 tgctttgttc ttttttgact tttttggttt tttgttttgt tgttgttgtt ttttattttt
     8041 ttctttcttg gcatccagtg gtcaaactga tcatgccttc aaatttattt tcatgcacag
     8101 aactagtttt tgtgaacatt attactactt ccaaagattt ttctgataac ttgggccaga
     8161 actggtgact gagtaacaag ggtctgattg aatgcctcca aacccaccca caacaggaat
     8221 cttacctcac aagctcttac ctgaatcata gagaaactca tgctccatgc aatgtcactg
     8281 acttctctgt tgctcgccag aaggtgtttg cttgctcgct cttgtctcct gacacctcac
     8341 atcagtgcct gggctctcag agcagcagaa cctggggtct ggaaggctgg ggaccttgag
     8401 ctaagcaagt gttcagccac attttcatgt cattcgcact aacaagcctc tggctctcag
     8461 gaatttgtca aaaggttgat gaaacctcct gaggttccac acaccaggtt ataaactggt
     8521 tctcataggt ttgaactgct tacatacatg tcataaatta accatagctt catttgaccc
     8581 caggtcttaa gtctgttgac agttttagca tgactgattc gctcatttta tttttttttt
     8641 tattttgctt tggaaattga cttggttctc tttagagttg gtgtaaacat gccatgtaat
     8701 aaatgatttc cagttaatgg tacaacagaa ttattgcttt cttagatgta tgtgtagtaa
     8761 aagtcaatat acacatttat ataatttctt caaaatctta tacctaattt gatatttcta
     8821 aaaattgcac atgtaagtca tgtgtataac atgctaaagt actttaactg tgatcttaaa
     8881 actgaataaa atatttaata aaaatttgaa atattttaaa gata
//
