LOCUS       XM_039082273            3994 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Bardet-Biedl syndrome 9 (Bbs9),
            transcript variant X5, mRNA.
ACCESSION   XM_039082273
VERSION     XM_039082273.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3994
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3994
                     /gene="Bbs9"
                     /note="Bardet-Biedl syndrome 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:315484"
                     /db_xref="RGD:1308472"
     CDS             843..3614
                     /gene="Bbs9"
                     /codon_start=1
                     /product="protein PTHB1 isoform X1"
                     /protein_id="XP_038938201.1"
                     /db_xref="GeneID:315484"
                     /db_xref="RGD:1308472"
                     /translation="MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSRNGQVLHGDQK
                     RASDNQDRSCWWFLSHHVSAANWTQHFLCKSNKIIVGSFMGYLRIFNPHPVKTGGGPQ
                     AEDLLLEVHLRDPVLQVEVGKFVSGSEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQYQ
                     IKLMYEHHLQRTACNMTYGPFGAVKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLL
                     PGPLAYSPRTDSFITVSSCRQVESYKYQVLAFATDADKKQEMEQQKLGSGKRLVVDWT
                     LNIGEQALDICIIPLNQSASSVFVLGERNFFCLKDNGQIRFMKKLDCSPSCFLPYCSV
                     SEGTINTLVGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGCLHDLKGVIVTLSDDGHL
                     QCSYLGTDPSLFQAPKVESRELNYDELDVELKELQKIIKDVKSQGVWPLTEQEDDLKV
                     SAAVSSALDSVSQATNVETGADSVPSITVKITLQNQVVLQKVKLSVYVQPPLQLTCDQ
                     FTFDFVAPDMTSIVTFSVYLKKTYTPSELEGNAVVSYSRATDRNPDGIPRVIQCKFRL
                     PLNLICLPGQPSKTASHKLTIDTNKSPVSLLGLFPDFANPSDDDQMNVMGFRLLGGSR
                     VTLLASRTSQRYRIQSERFEDLWLITNELILRLQDHFEKQGTKDFACSFSGCVPLQEY
                     FELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLTRFRDKTPAPLQHLDTLLDGTY
                     KQVIALADAVQENQDRLLQSFAGLKSATHLLILLIRLWQRLSADQTAILEAAFLPLQE
                     DTQELGWEETVDAAVAHLLKTCLSKSSKEQALNLSSQLSVPKDTSRLKKHITLLCDRL
                     AKGGRLCVSTDAAAPQAMVMPGGCTPIPESDLEERSLDDATELFTNHKHLIAEPPVPE
                     VSALQGVLE"
ORIGIN      
        1 caagccctgc ggccccgcgt ctgacttgcg cagtagcctc cgttgtaaaa tgctatgaca
       61 acagggcgaa ggcggcttgg atttaggctg gagtggggtg gtgtcttccg caggctgttg
      121 tcttgcagtc tcacccctct tacagtctcc ctggtggttt catcctctct gcgagcatcc
      181 agacctggag tttttctctc ttgtcttgtg gcttccgagg gatccatgtc gtttcccctg
      241 cttgtctctg agggatgaca agtgggtgca gaagatcttg gagggactta tttcaactcc
      301 gtggagcttg tgttactgct tggcaggagt ctgtctgtct gcggacgtgg aaaacttcga
      361 acacaagacc aagagaccac agcagtttag atggactaag ctgattttat tagcagctcc
      421 tccagagcaa gaaacattat ttggagaaag ttccagatgt gaacaacagc agcttttgga
      481 caagttcctg gtttcagagc ctgccgcaga cttgtaggtt gttcccactg cattctttgg
      541 ctatcgatgt tagtcacttc ttcgtgtgag agtctagttc agtgaggtgt tacaactgcc
      601 tgtctcacaa ataaaacaaa tataaacatt aaattgtaca gcattattag cgtgtaccaa
      661 aagaagggtc cgaaacctgg gcagcgcatg cgcagaagca agaccacgct ttaaatcgtg
      721 aaaagccctc gacatatgcc aaaataaaac gcagtgtttg gagattagcc gagatcaaca
      781 gaattctgct ctctggagaa ccagctcacc taagtgaact tggtacccgt ggttgaaagg
      841 aaatgtcctt atttaaagcc cgtgactggt ggtctactgt gctgggagag aaagaagagt
      901 ttgatcaggg ctgtttgtgc ttggctgacg tggacaacag caggaatgga caggtactcc
      961 atggtgacca gaagagggca tcagataacc aggaccggag ttgctggtgg tttttgagcc
     1021 atcatgtaag tgcggcgaac tggacccagc atttcctatg caagagtaat aaaatcattg
     1081 tgggcagctt catgggctac ctgagaatct tcaatcccca tcctgtaaaa accggaggtg
     1141 ggcctcaggc tgaagattta cttctagaag tgcatctgcg ggacccagtg ctgcaagtgg
     1201 aagttgggaa gtttgtctca ggctctgaga tgctccattt ggctgtgctg cactcccgga
     1261 agctctgtgt ctactccgtc tcagggacat tgggtaatgt ggagcatgga aaccaatatc
     1321 agataaagtt gatgtatgag caccatcttc agaggacagc ctgcaacatg acctatggac
     1381 cctttggtgc tgtcaaaggt cgggatttaa tttgtatcca gtctatggat ggcatgctga
     1441 tggtgtttga gcaggaaagc tatgcctttg ggaggtttct ccctggttct cttctgcctg
     1501 gccctcttgc ttacagtccc cgcacggatt ccttcataac tgtctcttct tgcagacaag
     1561 tggaaagtta caagtaccaa gtccttgcct ttgccacgga tgcggacaag aagcaggaaa
     1621 tggaacagca aaaacttggt tctggaaaac gactagttgt ggactggact ctgaatattg
     1681 gcgagcaggc cctggatatt tgtatcattc ctttaaacca gtcagcatct tctgtctttg
     1741 ttcttggtga gagaaacttc ttttgcctaa aggacaacgg gcagattcgg ttcatgaaga
     1801 agctcgactg cagccccagt tgttttctcc cgtactgctc agtctcggaa ggtacgataa
     1861 acactttggt tggaaaccat aaccacatgc tgcacgttta ccaggacgtg acactgaagt
     1921 gggccacgca gcttccccac gtccccgtag cggtcagagt gggctgtctg catgatttaa
     1981 agggagtgat agtgactctc agtgatgacg gtcacctgca gtgttcatat ctggggacgg
     2041 acccttctct gttccaagct ccaaaagttg aatcaagaga gctcaactat gacgaacttg
     2101 atgtagaatt gaaagaactt cagaaaatca tcaaagatgt aaaatcgcaa ggtgtttggc
     2161 ccttgacaga acaggaggat gacctgaaag tctccgctgc agtgtcttct gccctggatt
     2221 ctgtgtctca agccaccaac gttgaaactg gagccgactc tgttccatcc atcacagtga
     2281 agattaccct gcagaatcaa gtggtgctgc agaaggtcaa gctgtcagtg tacgtgcagc
     2341 cgccattaca attgacttgc gatcagttta cctttgactt tgtggcacca gacatgacca
     2401 gcatcgtaac attctctgtg tacctgaaga aaacttatac accgtccgaa ttagaaggaa
     2461 atgctgttgt ttcatactcc agagcaacag atcgaaatcc tgatggtatt cctcgggtta
     2521 tccaatgtaa atttagactt cctctgaacc taatttgcct ccccggtcaa ccttcaaaaa
     2581 ctgcaagcca caaactgacc attgacacca ataaatctcc cgtcagtctg ctgggcctct
     2641 tcccagactt tgccaacccg tcagatgatg atcaaatgaa cgtaatgggc ttccgtctcc
     2701 taggaggctc tcgagtgact cttcttgctt ccagaacttc ccaacgatac cgcattcaga
     2761 gcgaacggtt tgaagatctc tggctcataa caaatgaact catcctccgc cttcaggatc
     2821 attttgaaaa acagggaacc aaagactttg catgttcttt ttctggatgt gtgccccttc
     2881 aagaatattt tgagttgatt gatcatcatt ttgagctacg gataaatggt gaaaaattag
     2941 aagaactttt atctgaaaga gctgtacagt ttcgggccat ccagcgtcgg cttctcacaa
     3001 gattcagaga taagaccccc gcccccctgc agcacctgga caccctgctg gacgggacgt
     3061 acaagcaggt gattgctcta gcagatgcgg tccaggaaaa ccaagacagg ctgttgcagt
     3121 cattcgccgg cctgaagagt gccacccatt tgctgatcct gttaatcagg ctgtggcaga
     3181 ggctgagtgc tgaccagact gctattctgg aagcagcatt tctgccacta caggaagaca
     3241 cgcaggaact gggctgggaa gagaccgtgg atgccgccgt tgcccacctt ttgaaaacct
     3301 gcctgtcgaa gagttccaag gagcaggctt tgaacctcag cagccagctg agcgtgccca
     3361 aagacaccag ccggctgaag aagcacatca ctctgctgtg cgacagactg gctaaaggcg
     3421 ggcgcctctg cgtgagcacc gatgctgcgg ccccgcaggc catggtaatg ccaggtggct
     3481 gtactccaat cccagagtca gacctagagg aaagatcgct agatgacgcc acagagctgt
     3541 ttaccaacca caagcacctc atcgccgagc cccccgtgcc tgaagtctca gccctccaag
     3601 gagttctgga gtagtgctaa gcagtcggga ggaagaggcc ctttctgagg ctgaccctgt
     3661 gtggacactg tgctcccatc ccgggactgt gccaagctca cccctggagg cgacttcgtg
     3721 aagatggggt cagggctgtt ggttgcttgg aggacttggg atgtcacaga caggtcagct
     3781 gaaagatgag atttgtcttt tcttcccagg aaaacgactg ctgcctttag tcacatgcgc
     3841 ttatagtcag gatttagcaa ggtgacaaag tttggagaca gactttataa tacagggatc
     3901 ccaatgtaaa ataatttcat agcccatttt ttcacaggat tcttacgtag taactgtatc
     3961 aagtttaata aagcatctta ttgtcaaaca ataa
//
