LOCUS       NM_001395618            2201 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus basal body orientation factor 1 (Bbof1), mRNA.
ACCESSION   NM_001395618 XM_006240348
VERSION     NM_001395618.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jul 22, 2021 this sequence version replaced XM_006240348.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.423336.1,
                                           SRR26360194.2344459.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-197               JAXUCZ010000006.1  109786363-109786559
            198-426             JAXUCZ010000006.1  109789258-109789486
            427-492             JAXUCZ010000006.1  109790873-109790938
            493-636             JAXUCZ010000006.1  109791945-109792088
            637-717             JAXUCZ010000006.1  109798434-109798514
            718-788             JAXUCZ010000006.1  109802325-109802395
            789-933             JAXUCZ010000006.1  109804111-109804255
            934-1427            JAXUCZ010000006.1  109805535-109806028
            1428-1529           JAXUCZ010000006.1  109806718-109806819
            1530-1604           JAXUCZ010000006.1  109808345-109808419
            1605-1719           JAXUCZ010000006.1  109808580-109808694
            1720-2201           JAXUCZ010000006.1  109811672-109812153
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..2201
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /note="basal body orientation factor 1"
                     /db_xref="GeneID:500693"
                     /db_xref="RGD:1560978"
     exon            1..197
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     CDS             148..1734
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /note="coiled-coil domain containing 176"
                     /codon_start=1
                     /product="basal body-orientation factor 1"
                     /protein_id="NP_001382547.1"
                     /db_xref="GeneID:500693"
                     /db_xref="RGD:1560978"
                     /translation="MPAKDKRKVKNKEQDQKKEVKVEDNAIERAKANASLWEARLEVT
                     ELSRIEYRDTSRRLAKNNEDLKKQQYKLEKDTMSVLSYLKKQDQEKDNMIEKLKQQLA
                     ETKEKAKEEKEKLEQKYSMQVSELEGQFHQKAKEIGMIQTELKTIKQFQKRKIQVEKE
                     LEDLKENLRNSEKNYQETLRRLESRFFEEKHRLEQEAEKRIMILAERAHHEAVVQLNT
                     AGRNVFKENVYLHKALAYHLKAAEAQQKNSKKMEESHSCLIHQKEINDLLVKEKIMQL
                     MQQRSQIQALQKKVVSLENALTYMTAEFEAEVSKLQQKALIENQAGLVEIDKLQQLLQ
                     MKDKEMNRIKKLARNILDERTEVEQFFLDALYEVKQQILISRKHYKQIAQAAFNLKMR
                     MACAGRTEYPRIRTFDGREQSTNSVNQDLTEAEKWPTTQENVDIRDLTWEQKEKVLRL
                     LFAKMNGFAARKYSQSSKPPVPDHITYDSGEMKESREEPGLPDQTFITQQVPVSDSNK
                     MVSPGVIPQELQDSDIEPRK"
     exon            198..426
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            427..492
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            493..636
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            637..717
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            718..788
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            789..933
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1427
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..1529
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            1530..1604
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            1605..1719
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
     exon            1720..2201
                     /gene="Bbof1"
                     /gene_synonym="Ccdc176; RGD1560978"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtcacgtca cgcgcgtgcg ctctccgcgt gccctcaacg gcgcggagga cgttagccct
       61 tcggcgtggt ggtttcctta gagacggagt cggcccaggt ggcggccacc aggagaccgg
      121 caccgtgaga ctcctggaga agtcaaaatg ccggcaaagg acaagaggaa agtcaaaaac
      181 aaagagcaag atcaaaagaa agaagtaaaa gtagaggaca atgcaatcga acgagccaaa
      241 gccaatgcct ctctctggga ggccagactg gaagtcacag aactctctag gattgagtat
      301 cgcgatactt cccgaagact ggcaaaaaat aatgaagact taaagaaaca gcagtataaa
      361 ctggaaaaag acaccatgtc tgtattaagc tacttgaaga agcaggatca ggagaaagat
      421 aatatgatag aaaaactgaa gcagcagttg gctgagacaa aggaaaaagc caaggaagag
      481 aaggaaaaat tggaacaaaa gtattctatg caagtcagtg aattggaggg acagtttcat
      541 caaaaagcca aggaaattgg catgattcag acagagctaa agacaataaa acaattccag
      601 aagaggaaaa tacaagtgga aaaagaatta gaagatctga aagaaaatct aaggaactca
      661 gagaagaact atcaggagac ccttagaaga ctagaaagca gattttttga agaaaagcac
      721 cggctggaac aagaggctga gaagaggatc atgatactgg ccgagagagc ccaccatgaa
      781 gctgtggtgc agctgaacac tgcgggaaga aacgtcttta aagagaatgt ttatcttcac
      841 aaggcgctcg cataccactt gaaggcagct gaggctcaac agaagaactc caagaagatg
      901 gaagagagtc actcctgcct tatacaccaa aaggaaatca atgatctgtt ggttaaggaa
      961 aagattatgc aactcatgca gcaaagatca cagatccaag ctcttcagaa gaaggtggtg
     1021 agcttggaga atgctctgac ctacatgacc gcagagtttg aggctgaagt ttcaaagctg
     1081 cagcaaaagg cactcataga gaaccaagca ggtttggtag agatcgacaa gctgcagcag
     1141 cttcttcaga tgaaggacaa ggagatgaac cgcataaaga agctggccag gaacatactg
     1201 gatgagagga cagaagtgga acagttcttt ctagacgctc tctacgaagt gaagcaacag
     1261 attctgatca gcaggaagca ttataagcaa atagcacaag ctgctttcaa tttaaaaatg
     1321 agaatggcgt gtgcaggaag gacagaatac ccccgaatca ggacctttga cggcagagaa
     1381 caaagcacca atagtgtgaa tcaggacctc acggaggctg aaaaatggcc aactactcaa
     1441 gaaaatgtgg atattagaga tttgacctgg gaacaaaagg aaaaagtctt aagattgctc
     1501 tttgcaaaaa tgaatggctt tgctgccagg aaatacagtc agagttctaa gcctcctgtt
     1561 ccagaccata ttacttatga cagtggagaa atgaaagaaa gtagggagga acctggcctt
     1621 ccagatcaaa ccttcatcac ccagcaagtg ccagtatcag actccaataa aatggtgtca
     1681 cctggtgtta ttcctcaaga attacaggac tctgacatag agcctaggaa atgatgactc
     1741 ctcagcagat gcaagcggac cttctttatg tgatcttgct ctgaatatgt tcaagacaga
     1801 ttctcaaaga aaaagagaat tccaactcaa aagttacctg tttgccatag aaattggtgt
     1861 ctcccctgaa ggaagatcga gagccagtga aggaaaacat tggcaaaggc actggaatgg
     1921 ggacattcac gcccacctaa aaaacaaatc acatcaaagt tgaagagaac tccccaaagg
     1981 gctcgaacca cagtgcccat gtagaagctc aaaggcaaca gagattaatt ttatttttgc
     2041 tttggttttt agattttgtt tggtttgagg tttttttttt ttctttttga gatatcaatt
     2101 ttaagtagtc atcttgcacc ctggtgctcc accctaagaa cttttattcc tgaggaagag
     2161 atgggtaatt gtgggcaatt aaagggacag tgttcaaaca a
//
