LOCUS       NM_001170568            5428 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus bromodomain adjacent to zinc finger domain, 1A
            (Baz1a), mRNA.
ACCESSION   NM_001170568
VERSION     NM_001170568.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5428)
  AUTHORS   Hargreaves,D.C. and Crabtree,G.R.
  TITLE     ATP-dependent chromatin remodeling: genetics, genomics and
            mechanisms
  JOURNAL   Cell Res 21 (3), 396-420 (2011)
   PUBMED   21358755
  REMARK    Review article
REFERENCE   2  (bases 1 to 5428)
  AUTHORS   Collins,N., Poot,R.A., Kukimoto,I., Garcia-Jimenez,C., Dellaire,G.
            and Varga-Weisz,P.D.
  TITLE     An ACF1-ISWI chromatin-remodeling complex is required for DNA
            replication through heterochromatin
  JOURNAL   Nat Genet 32 (4), 627-632 (2002)
   PUBMED   12434153
REFERENCE   3  (bases 1 to 5428)
  AUTHORS   Sutherland,H.G., Mumford,G.K., Newton,K., Ford,L.V., Farrall,R.,
            Dellaire,G., Caceres,J.F. and Bickmore,W.A.
  TITLE     Large-scale identification of mammalian proteins localized to
            nuclear sub-compartments
  JOURNAL   Hum Mol Genet 10 (18), 1995-2011 (2001)
   PUBMED   11555636
REFERENCE   4  (bases 1 to 5428)
  AUTHORS   Poot,R.A., Dellaire,G., Hulsmann,B.B., Grimaldi,M.A., Corona,D.F.,
            Becker,P.B., Bickmore,W.A. and Varga-Weisz,P.D.
  TITLE     HuCHRAC, a human ISWI chromatin remodelling complex contains hACF1
            and two novel histone-fold proteins
  JOURNAL   EMBO J 19 (13), 3377-3387 (2000)
   PUBMED   10880450
REFERENCE   5  (bases 1 to 5428)
  AUTHORS   Tate,P., Lee,M., Tweedie,S., Skarnes,W.C. and Bickmore,W.A.
  TITLE     Capturing novel mouse genes encoding chromosomal and other nuclear
            proteins
  JOURNAL   J Cell Sci 111 (Pt 17), 2575-2585 (1998)
   PUBMED   9701556
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001170568.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               JAXUCZ010000006.1  78217647-78217788   c
            143-421             JAXUCZ010000006.1  78205913-78206191   c
            422-565             JAXUCZ010000006.1  78180953-78181096   c
            566-667             JAXUCZ010000006.1  78175702-78175803   c
            668-755             JAXUCZ010000006.1  78171187-78171274   c
            756-890             JAXUCZ010000006.1  78166649-78166783   c
            891-990             JAXUCZ010000006.1  78164115-78164214   c
            991-1157            JAXUCZ010000006.1  78163517-78163683   c
            1158-1253           JAXUCZ010000006.1  78161635-78161730   c
            1254-1392           JAXUCZ010000006.1  78160869-78161007   c
            1393-1539           JAXUCZ010000006.1  78158962-78159108   c
            1540-1635           JAXUCZ010000006.1  78154063-78154158   c
            1636-1860           JAXUCZ010000006.1  78153717-78153941   c
            1861-2026           JAXUCZ010000006.1  78153116-78153281   c
            2027-2134           JAXUCZ010000006.1  78152823-78152930   c
            2135-2259           JAXUCZ010000006.1  78150004-78150128   c
            2260-2859           JAXUCZ010000006.1  78147857-78148456   c
            2860-3020           JAXUCZ010000006.1  78144186-78144346   c
            3021-3172           JAXUCZ010000006.1  78142374-78142525   c
            3173-3321           JAXUCZ010000006.1  78140764-78140912   c
            3322-3569           JAXUCZ010000006.1  78132286-78132533   c
            3570-3796           JAXUCZ010000006.1  78131977-78132203   c
            3797-4263           JAXUCZ010000006.1  78129540-78130006   c
            4264-4406           JAXUCZ010000006.1  78127176-78127318   c
            4407-4494           JAXUCZ010000006.1  78126270-78126357   c
            4495-5428           JAXUCZ010000006.1  78124872-78125805   c
FEATURES             Location/Qualifiers
     source          1..5428
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q23"
     gene            1..5428
                     /gene="Baz1a"
                     /note="bromodomain adjacent to zinc finger domain, 1A"
                     /db_xref="GeneID:314126"
                     /db_xref="RGD:1306199"
     exon            1..142
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..4691
                     /gene="Baz1a"
                     /codon_start=1
                     /product="bromodomain adjacent to zinc finger domain
                     protein 1A"
                     /protein_id="NP_001164039.2"
                     /db_xref="GeneID:314126"
                     /db_xref="RGD:1306199"
                     /translation="MPLLHRKPFVRQKPPGDLRPDEEVFYCKVTNEIFRHYDDFFERT
                     ILCNSLVWSCAVTGRPGLTYQEALESERKAKQDLQSFPEPLIIPVLYLTNLTHRSRLH
                     EICDDIFAYIKDRYFVEETVEVIRNNGTRLQCRILEVLPPLHQNGFANGHMSSVDGET
                     IVISDSDDSETQSSSFQHGKKKDAIDPLLFRYRVQPTKKEMYESAVVKATQISRRKHL
                     FSRDKLKLFLKQHCEPQDGVIKIKASSFSTYNIAEQDFSYFFPDDPPTFIFSPANRRR
                     GRPPKRISFGQEDNIASKQTIARCRSKAIKERDKLLKQEEMRALAFEKAKLKREKADA
                     LEARKREREDREKKREELKKIVEEERLKKKEEKERLKIEREKEREKLREEKRKYMEYL
                     KQWSKPREDMECDDLKELPEPTPVKTRLPPEVFGDALMVLEFLNAFGELFDLQDEFPE
                     GVTLEVLEEALVGNDSEGPLCELLFFFLTAIFQAMAEEEEEVAKEQITDADTKDLTEA
                     LDEDADPTKSALSAVAALAAAWPQLHQGCSLKSLDLDSCTLSEILRLHILASGADVTS
                     ANAKYRYQKRGGFDATDDACMELRLSNPSLVKKLSSTAVYDLTPGEKMKILHALCGKL
                     LTLVSTRDFIEDYVDVLRQAKQEFRELKAEQHRKEREATAARIRRRKEEKLKEQEQKM
                     KEKQEKLKEDEQRTSAADLGEEGREDFDTSADSKEIERKDLDPDVVTEDEDDLGSHKR
                     SRRGKAGQTAVKQCIKQEEMNYCIKQEPLTADAEEALRQEHQRKEKELLDKIQSAIAC
                     TNIFPLGRDRLYRRYWVFPSIPGLFIEEDYSGLTEDMLLPRPSSFHSNAQPHSPRVSI
                     KTEESFMSESTSSLDQGPFDDSLLLPKPVHKPNRWCFYSSCEQLDQLIEALNSRGHRE
                     SALKETLLQEKSRICAQLAHFSEEKFHFSDKPQADSKPVSSRGRSAACDTSQMSAERQ
                     LELRLRDFLLDIEDRIYQGTLGAIKVTDRQVWRSALENGRYELLSEESKENGVSKAVN
                     DDVEEMEIEQARVIVRDRLLGLKTETPSTVSTSTSTPQSVSNVVHYLATALFQIEQGI
                     ERRFLKAPLDGSDSGRSYKTVLDRWRESLLSSASLSQVFLHLSTLDRSVMWSKSILNA
                     RCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKTVPDGDWFCPECRPKQRSRRLSSR
                     QRPSLESDEEMEEGMEGDDGEVDDDDEDGQSEEEEYEVEQDEEDSDEEEALSPPKRGR
                     PQVRLPIKTRGRFGPSFSSRSQRQDPGRYPSRSQQSTPKTTASKTAGRNLRKTRSAPP
                     TETRSLRLGSRSTRHSPNALQADVFVELLSPRGKRRVRKSADNTPEHSPSLTNLRVST
                     SRPSVQLIPLNSAERLSLQDSESKRRGRKRQSTESSPVPLNRRSSGRQGGVHELSAFE
                     QLVVELVRHDDSWPFLKLVSKIQVPDYYDIIKKPIALNIIREKVNKCEYKLASEFIED
                     IELMFSNCFEYNPRNTSEAKAGTRLQAFFHIQAQKLGLHVSPSNVDQASTPLAAKKSR
                     I"
     exon            143..421
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            422..565
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            566..667
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            668..755
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            756..890
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            891..990
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1157
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1158..1253
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1392
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..1539
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..1635
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..1860
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..2026
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2027..2134
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2135..2259
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2260..2859
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2860..3020
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3021..3172
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3173..3321
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3322..3569
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3570..3796
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            3797..4263
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            4264..4406
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            4407..4494
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
     exon            4495..5428
                     /gene="Baz1a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacgcgggt ggacgtgcgc agccgagaga tgccgctgct tcaccgaaag ccgttcgtga
       61 ggcagaagcc gccgggggac ctgcggccgg acgaggaagt tttctactgt aaagtcacca
      121 acgagatctt ccgccactac gatgactttt ttgagcgaac cattctgtgc aacagccttg
      181 tgtggagctg cgctgtgaca ggcagacctg gactgacata tcaggaagca cttgagtcag
      241 agagaaaagc aaagcaggat ctccagagtt tcccagaacc actaattatt ccagttttat
      301 acttgaccaa ccttacccat cgttcacgct tacatgaaat ttgcgatgat atctttgcat
      361 atatcaagga ccgatatttt gttgaagaaa ctgtggaagt cattaggaac aacggtacaa
      421 ggctgcagtg tagaatcttg gaagtcctcc ctccattaca tcaaaatggt tttgctaatg
      481 gacacatgag cagtgttgac ggagagacta ttgtcatcag tgacagtgac gactcagaaa
      541 cacaaagcag ttcttttcaa catgggaaga agaaagatgc aatcgatccc ttattattca
      601 gatacagggt acagcccact aaaaaggaga tgtatgagtc tgctgttgtt aaagcaacac
      661 aaatcagccg gagaaaacac ctattttctc gtgataaact aaagcttttt ctcaagcaac
      721 actgtgaacc acaagatgga gtcattaaaa ttaaggcatc atctttttca acatataaca
      781 tagcagagca agatttttct tatttcttcc ctgatgatcc acctacattt atcttcagtc
      841 ctgctaacag acgaagagga agacctccca aacgaatatc ttttggtcag gaagacaaca
      901 ttgctagtaa gcagactatt gcaagatgtc ggagcaaggc tattaaagaa agagacaaac
      961 ttttgaaaca agaagaaatg agggcactag cttttgaaaa ggccaaacta aaacgagaaa
     1021 aagcagatgc tttggaagca agaaaaagag aaagagaaga tagagagaaa aagagggaag
     1081 aattgaagaa aattgtagaa gaagaacgac tcaagaaaaa agaagaaaaa gagagactta
     1141 aaatagaaag agaaaaggaa agagagaaat tacgtgaaga aaaacgaaaa tatatggaat
     1201 acttaaagca gtggagtaaa cccagagaag acatggaatg tgacgacctt aaggaacttc
     1261 cagaaccaac tccggtgaaa accagactac ctcctgaagt cttcggtgat gctctgatgg
     1321 ttttggagtt ccttaatgca tttggggaac tttttgatct tcaagatgag tttcctgaag
     1381 gagtaacctt agaagtgtta gaggaagctc ttgtaggaaa tgacagtgaa ggcccactgt
     1441 gtgaattgct ttttttcttc ctgactgcaa tcttccaggc gatggctgaa gaagaggagg
     1501 aagtagccaa agagcagata actgatgctg acaccaaaga tctaacagag gctttggatg
     1561 aggacgcaga ccccacaaaa tctgcactgt ctgcagttgc agccttggcc gctgcatggc
     1621 cacagttaca ccagggctgc agtttgaaaa gcttggatct tgatagctgc actctttctg
     1681 aaatcctcag actgcacatc ttagcttcag gtgctgatgt gacatcagca aatgcaaagt
     1741 accggtacca gaaacgagga ggattcgatg ccacagatga tgcctgcatg gagcttcgac
     1801 tgagcaatcc cagtctggtg aaaaaactgt ccagcactgc tgtgtatgat ttgacaccag
     1861 gagaaaaaat gaagatactt catgctctct gtgggaagct actgacccta gtttctacta
     1921 gggatttcat tgaagattat gttgatgtat tgcgacaggc caagcaggag ttccgagagc
     1981 tcaaagcaga acaacaccgt aaagagagag aagccacagc tgctcgaata cgcagaagga
     2041 aggaagaaaa acttaaggaa caagaacaga aaatgaaaga gaaacaagag aaactgaagg
     2101 aggatgaaca gagaacttca gctgcagatc taggggaaga aggaagggaa gattttgata
     2161 ccagtgctga cagcaaagaa atagagcgga aagatctgga tcctgatgtg gttactgaag
     2221 atgaagacga cctgggatca cataaaagga gcagaagagg aaaagcagga caaactgcag
     2281 ttaaacaatg tataaagcaa gaagagatga actactgtat aaagcaggag cctctgactg
     2341 ctgatgcaga agaagctttg agacaggagc accagcggaa agagaaagaa ctcctagaca
     2401 agatccagag tgccatcgcc tgtactaaca tcttccctct cggacgagac cgcttgtaca
     2461 ggcggtactg ggtcttccct tctatccctg gtctgtttat agaggaggat tactcgggtc
     2521 ttactgaaga catgctgttg cctaggcctt catcattcca cagtaatgca cagcctcaca
     2581 gtcctcgggt atctattaaa actgaagagt ccttcatgtc tgaatctacc tccagcctcg
     2641 accagggtcc attcgatgat tctctgctgc tgccaaaacc agtgcataag ccaaatcggt
     2701 ggtgctttta cagttcctgt gaacagctag accagctcat tgaagctctc aactccagag
     2761 gacacagaga aagtgcctta aaagagacct tgcttcagga gaagagcaga atatgtgcac
     2821 agctcgcaca cttttctgaa gagaaattcc acttttcaga caaacctcag gctgatagca
     2881 agcccgtttc ttctcgggga cgatctgctg catgtgacac atcacagatg tctgcggaga
     2941 ggcagcttga gctgcgactc agagactttc tcttggatat cgaagacagg atctatcaag
     3001 ggacactagg agccatcaag gttacagatc gacaggtctg gaggtcagcc ctggagaatg
     3061 gccgatacga gctgttaagt gaggaaagca aggaaaacgg agtgagcaaa gctgtgaacg
     3121 acgatgtgga ggagatggag attgaacaag caagggtcat agtaagagac agacttttgg
     3181 ggcttaaaac agaaactcca agtaccgtct caactagtac cagtacacca cagtcagtga
     3241 gcaatgtggt tcattatctg gctacagccc tctttcagat agaacagggc attgaacggc
     3301 gtttcctcaa agctccactt gatggcagtg acagcggacg ctcttataaa actgtcctgg
     3361 accgttggag agagtctctc ctttcctctg ctagtctatc ccaagtcttt ctgcatttat
     3421 caaccttgga tcgcagtgtg atgtggtcta agtccatact gaacgcacgt tgcaagatct
     3481 gccggaaaaa gggagatgct gaaaacatgg tgctctgtga cggctgtgac cgagggcatc
     3541 acacctactg cgtccgacca aagctcaaga ctgttcctga tggagattgg ttttgtccag
     3601 aatgtcgacc aaagcaacgt tctagaagac tttcctccag acagagacca tccttggaaa
     3661 gtgatgaaga aatggaagag ggtatggaag gtgatgatgg tgaagttgat gacgatgatg
     3721 aagacggtca gagtgaagag gaagaatacg aggtggagca ggatgaggag gactctgacg
     3781 aagaggaagc cctcagccca ccgaaacgag gaagacccca agttagattg ccaattaaaa
     3841 caagagggag atttggccct tctttctcaa gtcgcagcca acgacaggac cctggaagat
     3901 acccttcaag gagtcagcag agcacgccca aaaccactgc ctctaaaact gctggcagaa
     3961 acctaaggaa aaccagatct gctcctccca cagaaactcg gtctctaaga cttggcagtc
     4021 gctccactcg ccacagtcct aacgcgctgc aagcagatgt gtttgtggaa ctgcttagtc
     4081 ctcgtgggaa gcgtagagtg aggaagagtg ctgacaatac cccagagcac agccccagcc
     4141 tcaccaacct cagggtcagc acctcaaggc caagcgtaca gttgattcct ttaaattctg
     4201 ctgaaagact ttctctccag gatagtgaat ctaagagaag aggcaggaag agacaatcta
     4261 cagagtcatc tcctgtacca ctgaatcgaa gaagttctgg ccggcaagga ggtgttcatg
     4321 aattgtctgc ttttgaacaa cttgttgtgg aattggtacg gcatgatgat agctggccct
     4381 tcttgaaact tgtttctaaa atccaggtcc cagactacta tgacatcatt aagaagccca
     4441 ttgccttaaa tataattcga gaaaaagtaa ataaatgtga atataaatta gcatctgagt
     4501 ttattgaaga tattgagtta atgttttcaa actgttttga atacaacccg cggaacacaa
     4561 gtgaagcaaa agctggaact cggctccaag cattttttca tattcaagct caaaagcttg
     4621 gactgcatgt ctcacccagt aatgtggacc aggctagcac gccactagct gcaaagaagt
     4681 cacggatcta atttgtcctt ataaaggcta tacgtgaaga aagacggatt gttgatgaaa
     4741 atggaacatt aaatcatgct ctgaagcaga tatgtgtgta gagcagtaac agctggctga
     4801 ccacgtcagt gcggcctgca ctgtattccc aatttactct taagcactca ggagaacgta
     4861 ggaaagactt cctttgctac agcttttgtt cagtgtctac taagttgcat agacgtactg
     4921 ggtacagtac tgggttacag aggcttgtgt atattttgag atcattcatg tgttcaggtg
     4981 tcttggaaaa tatttttcat ctatgctcta ttttgtcatt gagccttagg agttccagta
     5041 gtaaggaggt cttgtctcca cggtgagcct gctagaacac accatagaga gtgtgtctga
     5101 gctccatgtc atagggtttc aacactacac atgagtgagt ccagttcgct agctctgatg
     5161 tgctgtagcc agtaccaact gaatttatta actagatatt tatttagcat tcaaagtcat
     5221 ttgtgaattt gttttgtatt tataaaattt atacttggaa aatgttcttt aattttttta
     5281 aacattttac tatgtttttg ttttatttct caaccagtct taatgattta aaaataaaaa
     5341 tgtcatccta acagttctgt tttacaaaca ataagtttct gtgtacaact tttctaagtg
     5401 tgcaaataaa atgatacatt tttttcaa
//
