LOCUS       NM_021865                703 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus basic leucine zipper ATF-like transcription
            factor 3 (Batf3), mRNA.
ACCESSION   NM_021865 XM_008769873
VERSION     NM_021865.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Satpathy,A.T., Briseno,C.G., Lee,J.S., Ng,D., Manieri,N.A., Kc,W.,
            Wu,X., Thomas,S.R., Lee,W.L., Turkoz,M., McDonald,K.G.,
            Meredith,M.M., Song,C., Guidos,C.J., Newberry,R.D., Ouyang,W.,
            Murphy,T.L., Stappenbeck,T.S., Gommerman,J.L., Nussenzweig,M.C.,
            Colonna,M., Kopan,R. and Murphy,K.M.
  TITLE     Notch2-dependent classical dendritic cells orchestrate intestinal
            immunity to attaching-and-effacing bacterial pathogens
  JOURNAL   Nat Immunol 14 (9), 937-948 (2013)
   PUBMED   23913046
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Edelson,B.T., KC,W., Juang,R., Kohyama,M., Benoit,L.A.,
            Klekotka,P.A., Moon,C., Albring,J.C., Ise,W., Michael,D.G.,
            Bhattacharya,D., Stappenbeck,T.S., Holtzman,M.J., Sung,S.S.,
            Murphy,T.L., Hildner,K. and Murphy,K.M.
  TITLE     Peripheral CD103+ dendritic cells form a unified subset
            developmentally related to CD8alpha+ conventional dendritic cells
  JOURNAL   J Exp Med 207 (4), 823-836 (2010)
   PUBMED   20351058
REFERENCE   3  (bases 1 to 703)
  AUTHORS   Hildner,K., Edelson,B.T., Purtha,W.E., Diamond,M., Matsushita,H.,
            Kohyama,M., Calderon,B., Schraml,B.U., Unanue,E.R., Diamond,M.S.,
            Schreiber,R.D., Murphy,T.L. and Murphy,K.M.
  TITLE     Batf3 deficiency reveals a critical role for CD8alpha+ dendritic
            cells in cytotoxic T cell immunity
  JOURNAL   Science 322 (5904), 1097-1100 (2008)
   PUBMED   19008445
REFERENCE   4  (bases 1 to 703)
  AUTHORS   Bower,K.E., Fritz,J.M. and McGuire,K.L.
  TITLE     Transcriptional repression of MMP-1 by p21SNFT and reduced in vitro
            invasiveness of hepatocarcinoma cells
  JOURNAL   Oncogene 23 (54), 8805-8814 (2004)
   PUBMED   15467742
REFERENCE   5  (bases 1 to 703)
  AUTHORS   Iacobelli,M., Wachsman,W. and McGuire,K.L.
  TITLE     Repression of IL-2 promoter activity by the novel basic leucine
            zipper p21SNFT protein
  JOURNAL   J Immunol 165 (2), 860-868 (2000)
   PUBMED   10878360
REFERENCE   6  (bases 1 to 703)
  AUTHORS   Lee,J., Hahn,Y., Yun,J.H., Mita,K. and Chung,J.H.
  TITLE     Characterization of JDP genes, an evolutionarily conserved J
            domain-only protein family, from human and moths
  JOURNAL   Biochim Biophys Acta 1491 (1-3), 355-363 (2000)
   PUBMED   10760603
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On or before Nov 20, 2020 this sequence version replaced
            XM_008769873.2, NM_021865.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.609042.1,
                                           SRR26360190.2259326.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               JAXUCZ010000013.1  105220782-105220895
            115-219             JAXUCZ010000013.1  105223150-105223254
            220-703             JAXUCZ010000013.1  105231882-105232365
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q27"
     gene            1..703
                     /gene="Batf3"
                     /gene_synonym="Jdp1"
                     /note="basic leucine zipper ATF-like transcription factor
                     3"
                     /db_xref="GeneID:60462"
                     /db_xref="RGD:620501"
     exon            1..114
                     /gene="Batf3"
                     /gene_synonym="Jdp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..402
                     /gene="Batf3"
                     /gene_synonym="Jdp1"
                     /note="JDP-1; B-ATF-3; basic leucine zipper transcription
                     factor, ATF-like 3; Jun dimerization protein 1"
                     /codon_start=1
                     /product="basic leucine zipper transcriptional factor
                     ATF-like 3"
                     /protein_id="NP_068637.2"
                     /db_xref="GeneID:60462"
                     /db_xref="RGD:620501"
                     /translation="MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQR
                     SRKKQTQKADKLHEEHESLEQENSVLRREIAKLKEELRHLSEALKEHEKMCPLLLCPM
                     NFVQLRPDPVASCLPR"
     exon            115..219
                     /gene="Batf3"
                     /gene_synonym="Jdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            220..703
                     /gene="Batf3"
                     /gene_synonym="Jdp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcagagccc cgcgttcagg gcgccccgtg tggcgagcgc gcggcatgtc gcaagggccc
       61 cccgcgggcg gcgtgctgca gagcagcgtg gcggcgcctg ggaaccagcc gcagagcccc
      121 aaggatgatg acaggaaggt tcgaagaaga gagaaaaacc gggttgcagc tcagaggagc
      181 cgaaagaagc agacacagaa ggctgacaag cttcacgagg aacatgagag tctggagcag
      241 gagaactctg tgctgcgcag ggagatcgcg aagctgaagg aggagctgcg gcacctgagt
      301 gaggcgctga aggagcacga gaagatgtgc ccgctgctgc tctgcccgat gaactttgtg
      361 cagcttcggc cagaccccgt ggccagctgt ctgccacgat gatgccccag atcacccctc
      421 ttttatctgg ctcggaacct tggtttgcac actcaggagt ttctctacac atctgtgtcc
      481 aggggtacgc gtggccctgc cgctccaggg agctgtgggg ctagcctggg ctcagcattg
      541 tgctctgggg cacctgactt ccggcctcag cgtggtgggg cggatccaga ggccccagtg
      601 agaaggccct gtgagtcgct cccccctcac tttggcagct agcccgtcct gtccttaggc
      661 agggtctttt catctagaat ttggaaaata aagattgtta ccg
//
