LOCUS       XM_003750457            2213 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BARX homeobox 2 (Barx2), mRNA.
ACCESSION   XM_003750457
VERSION     XM_003750457.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 25, 2024 this sequence was replaced by
            NM_001427453.1.
            
            On Jan 21, 2021 this sequence version replaced XM_003750457.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2213
                     /gene="Barx2"
                     /note="BARX homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:679701"
                     /db_xref="RGD:1584840"
     CDS             584..1456
                     /gene="Barx2"
                     /codon_start=1
                     /product="homeobox protein BarH-like 2"
                     /protein_id="XP_003750505.1"
                     /db_xref="GeneID:679701"
                     /db_xref="RGD:1584840"
                     /translation="MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSL
                     YSVCPSLVVRPKPLHSCTGSPSLRAYPLLSVITRQPTVISHLVPTGPGLTPVNTRHAV
                     AAEAAAAAAAAAAAAAAETPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLE
                     KKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRP
                     KKNSIPTSEEIEAEEKMNSQAQSQEQLGSLQGQEEPRDPQEPKACLVPLEVAEPSQQP
                     QELPEASSEPPPLS"
ORIGIN      
        1 cctacagggt tgcggggagc cgggagcggt gcccccttta gctggctcta ggctgggcag
       61 tgaggagcgt tgctgcttgg aaaactggcg gcccgactcc tgagccgccc gagaaggcgg
      121 tgcgctccgg acgtactgcg cgtgcacaca cacgagctcg cgcgcacacc ccgtacacac
      181 acctgaagct gggggagggc gagaggagaa ccgaggcgag tgtcttaaaa tagagagcca
      241 gcccggcgag cgctcgactc tcgggacggc gggaggcagc gagcaagagc ggtcggaccc
      301 ggggtgcgca ggtcagcacc ccggccgcac gggcgcgcag gggcggggta gcagccgacg
      361 cccctcggct cgcgctccgc acctggccct gcaggaagtg cgcgctgatt gacagctgcg
      421 gtgtcccaaa aaggctgtag tcaaagatgc tgctcggcgg gtgggtgtag acgcagcagg
      481 cgcgcctgtg ccctctctgt ttcgcgcgcc tccccgggcc ccgccgcccc tctggctgcc
      541 gaggagcggg gctcaggtct ccaggctccg gtcccggctc accatgcact gccacgcgga
      601 actgaggctg agctcacccg gccagctcaa agcagccagg aggcgctaca agactttcat
      661 gatcgatgag atcctctcca aggagacctg cgactacttt gagaaacttt ccctctactc
      721 tgtgtgccca tcgctggtgg tgcgacccaa gcccctgcac tcttgtaccg gttctccttc
      781 cctacgggca tatcctctcc tgtcggtgat cacccggcag cccacagtca tctcccacct
      841 ggttcccacc ggccctggac tcaccccagt taacactcgc cacgcagttg ctgctgaggc
      901 tgctgctgcc gctgccgccg ccgccgctgc cgccgctgcc gagacccctg gtggcgaggc
      961 attagccagc agcgaatcag agacagaaca acccaccccc aggcagaaga aaccacgcag
     1021 gagtcgcacc atcttcacgg agctgcagct catgggccta gagaagaaat tccagaagca
     1081 gaagtatttg tctaccccag acaggttgga cttggcccag tctctggggc tcacgcagct
     1141 gcaagtgaag acttggtatc agaaccgaag gatgaagtgg aagaagatgg tccttaaagg
     1201 tggacaggaa gcacccacga aacctaaggg gcgccccaag aagaactcca ttcccacatc
     1261 agaggagatc gaagcggaag agaaaatgaa cagtcaggcc cagagccagg agcagctggg
     1321 atccttgcag ggacaggagg aaccccgtga tccccaggag cccaaagcgt gcctggtccc
     1381 cttggaggtg gcagaaccga gtcaacagcc ccaggagttg ccagaagctt cctctgaacc
     1441 cccaccatta agctaaacta aagttcttta gggggagggg gagcctggga agaagggaag
     1501 agagaagcaa ggagatgctg acggagagaa gaccgctaaa gactagtcac gtgggtagag
     1561 gagcgcttgc tgtctccctc ctcccagcgg cattttcatc tggagcactt gatgaagact
     1621 tacttgtgtg ggacttgccg ttcttgcaag gctgtgttag ccacagatac ccttgagtaa
     1681 gggagatagc gccttggatc tgattgccca ggcttaggtg atggctttag ggctggctgc
     1741 agcagcctct tagtgtgtcg ggctgggctg gcctgcagca agggctgctc ttctccctct
     1801 gggcaacagg tcagcaaagc agggagaaag gaggtggaag tgcttgggag gcctgcccag
     1861 gctccttgct gactcagcac ttatttctgt agttttaaga gaattgattt ttttttttga
     1921 gggtggggtg gggtggggtg gggaaagcca ttaaaggcag agaaaaaaga aaaaaaaaaa
     1981 gaaaaaaaaa ggagttggag ggagttgtga gttacagggg acgtctcaga gtcctgctcg
     2041 tctgtttgga gacacgtgtg cctttgtacc tttataagat ggtcaggtgc caacagacct
     2101 gatgatcgat ccttggcttc cctgcttcgt gaagctgcca tccgggaagc cgcaaatgca
     2161 gatgcgttaa gataactttt attttttaat taaaaataaa tctttgaaga gga
//
