LOCUS       NM_001108880            1372 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus BARX homeobox 1 (Barx1), mRNA.
ACCESSION   NM_001108880 XM_001056986 XM_344575
VERSION     NM_001108880.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Verzi MP, Stanfel MN, Moses KA, Kim BM, Zhang Y, Schwartz RJ,
            Shivdasani RA and Zimmer WE.
  TITLE     Role of the homeodomain transcription factor Bapx1 in mouse distal
            stomach development
  JOURNAL   Gastroenterology 136 (5), 1701-1710 (2009)
   PUBMED   19208343
REFERENCE   2  (bases 1 to 1372)
  AUTHORS   Kim BM, Miletich I, Mao J, McMahon AP, Sharpe PA and Shivdasani RA.
  TITLE     Independent functions and mechanisms for homeobox gene Barx1 in
            patterning mouse stomach and spleen
  JOURNAL   Development 134 (20), 3603-3613 (2007)
   PUBMED   17855428
REFERENCE   3  (bases 1 to 1372)
  AUTHORS   Kim BM, Buchner G, Miletich I, Sharpe PT and Shivdasani RA.
  TITLE     The stomach mesenchymal transcription factor Barx1 specifies
            gastric epithelial identity through inhibition of transient Wnt
            signaling
  JOURNAL   Dev Cell 8 (4), 611-622 (2005)
   PUBMED   15809042
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473977.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_344575.3, XM_001056986.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMN12840105 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..1372
                     /gene="Barx1"
                     /note="BARX homeobox 1"
                     /db_xref="GeneID:364680"
                     /db_xref="RGD:1310884"
     exon            1..306
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..848
                     /gene="Barx1"
                     /note="BarH-like homeobox 1"
                     /codon_start=1
                     /product="homeobox protein BarH-like 1"
                     /protein_id="NP_001102350.1"
                     /db_xref="GeneID:364680"
                     /db_xref="RGD:1310884"
                     /translation="MQRPGEPGSARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGA
                     APAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALL
                     AAGPGMPGTAGTSHLPLELQLRGKLEAAGSGEPGTKAKKGRRSRTVFTELQLMGLEKR
                     FEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPK
                     KNSIPTSEQLTEQERAKEAEKPAETPGEPSDRSCED"
     exon            307..598
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
     exon            599..683
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
     exon            684..1372
                     /gene="Barx1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggcctaga gccccgcgcg ggccccgcgc caaagcttag ccgccgtcgc tgcctagccg
       61 tggtcgcatc cccgggagcc gcgatgcagc ggccggggga gccgggctcc gcgcgcttcg
      121 gtccgcccga gggctgtgcg gatcatcgac cgcatcgcta ccgcagcttc atgatcgaag
      181 agatcctcac cgagcctccc gggcccaagg gcgcagcgcc cgcggccgcc gctgctgccg
      241 cgggcgagct gctcaagttc ggcgtgcagg cgctgctggc cgcccggccc ttccacagcc
      301 acctggcggt gctgaaggct gagcaggccg cagtgttcaa gttcccactg gcgccgctcg
      361 gctgctctgg gctgggctcc gccttgttgg ccgcggggcc tgggatgccc ggcaccgcag
      421 gcacgtcgca cctgccactg gagctgcaac tccgcgggaa gctggaagcc gctggctcgg
      481 gggaacctgg cacgaaagcc aagaaaggac gccggagccg cactgtattc actgagctgc
      541 agctgatggg tctggagaaa cgcttcgaga agcagaagta cctctctacc ccagacagaa
      601 tagatctagc tgaatccctg ggcctgagcc agttacaggt gaagacgtgg tatcaaaatc
      661 ggaggatgaa atggaagaaa atagtgctgc agggtggagg cctggagtcc cccaccaagc
      721 ccaagggacg gcccaagaag aactccatcc ccacgagcga gcagctcacg gagcaggagc
      781 gcgccaagga ggcagagaag ccagcggaga caccgggcga gcccagcgat cgaagctgcg
      841 aggactgagc gtcgcggagg gtgcggcgcc ttcagcggcg accccaggag ctggcccttt
      901 cgtgctcaag ccgtttgctt tctaaacgtt tcattactac tttgaatgcg gacagttacg
      961 ggccagacaa ggaaggacac aggcccggaa gccaatccca ggtctcagcg agctcctgcc
     1021 cccagtctgg gagagttgtg ttcagcgtgg ccgaagcttc tggtctttct cggacctccg
     1081 cagtgccccg gcgctccacg cgcattcacg tcccgctcct tgcccacact tttccccggc
     1141 ctccagccgg ccttctgggc ccggacaccg gcaggcacac actcgtttct gcgccttggg
     1201 gacccggccg ccaggtgcag gtccctacca ccctgccctg cagaatcgtc tctagcaaat
     1261 cagctgacac ctggtacccg atgtcgctga ggcttctaac ccctctcttg caaagacggt
     1321 gacttttttt tttccaataa aatattttat gacacagtgg gggggcttga tg
//
