LOCUS       XM_039106608            2052 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BANF family member 2 (Banf2),
            transcript variant X1, mRNA.
ACCESSION   XM_039106608
VERSION     XM_039106608.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106608.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2052
                     /gene="Banf2"
                     /note="BANF family member 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 10 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:296198"
                     /db_xref="RGD:1307909"
     CDS             1510..1998
                     /gene="Banf2"
                     /codon_start=1
                     /product="barrier-to-autointegration factor-like protein
                     isoform X1"
                     /protein_id="XP_038962536.1"
                     /db_xref="GeneID:296198"
                     /db_xref="RGD:1307909"
                     /translation="MHTGSPNQGLVGREALWHPQCLSKKWDPINLGPADRQGSLKPAF
                     RSIFSPRSSKTNGKIRRQTRGDLLRRKKMDNMSPRLKAFLSEPIGEKDVAWVDGISCE
                     LAINLVTKGFNKAYVLLGQFLLMHKNEAEFQRWIICCCGATECEARQSSTCLKEWCAC
                     FL"
ORIGIN      
        1 ctaacccctc tttcaggctc caggatatgg gtgtattggg ggaggagggg ctactttact
       61 gggttcttat attgatcacc cttccaaccc ttattccaac tagcttgaca aggctagaga
      121 ggaaaggagt gtatatctct ttagactact gcatgctatt taggggggtt ggatcccttc
      181 gggcaaggcc aatctttgtt ggcaggatct ccaatttttt cttctcatct ctttgctcat
      241 gggcaaacca cagcaacagg aacattagca ataaagacag cagcaggagg aacagcagcc
      301 atgccccagg ccctctcagg ggtctcccat ctatacccgc tcaagagtcc ccagaatccc
      361 aagcataaac tatctgaagc tagcgaaatt cacacagggc cctcctagag tatgatataa
      421 tcatacttgg tagctatgga caatctgaag cagctcaata tcccatacct gggattaaaa
      481 caacaacaac aaaaattcac atagcttaac tttttttaag aaaccaaaaa tccctctcta
      541 cacttctcac tacatttccc tctcttagtc caaaaactgg cttttctcta acatcaataa
      601 actctataca acaagaacaa ttatgagaac tattgagtaa gaattatatc cacaatgtcc
      661 agtccatttg tatttggcaa acttggagat agtactccac tatctgtctt ctggtgagtc
      721 caaagttctg tacctaaacc actttcttat cataacttga atttatcaat ctaaaaaaaa
      781 catcttttta gactctaaac attttcatag atcctaaaca acttaagctt ttgtctttaa
      841 tctttagtaa gaaaaactat aagattatta cgatctagtc ttcaactcca tcagagacct
      901 gagaaggata aatattacct gagtaaacag aaaatgagag taaccagctt ccaaaactat
      961 agaaaggaca gagaatgctg gttgcctaga cagtcatcca agattccact gtatccttgg
     1021 ggcgtccatc tttggcctac aagcccagaa tatctgagag acctttctat gaagcaggaa
     1081 ttttaaagga ctggcctacc ttatctctgc aaagttggac agtcgatttt ccagtgtcct
     1141 gcttgtccac agtttggaca gcctgttgtc agctgttgag cagttcacca tatagcccaa
     1201 gcagacctca aacgtaatgt cttcctgcat cgtgcaccgg ggtgctggga tggcagcatg
     1261 caccaccatg cctgacttcg tgcatgattt tttaaacatc tgctatgctc cagggctgac
     1321 actgaagctt ctcttccatt gtcttcaact gaggtgcaaa gcatttcgat gaaaattttc
     1381 ggaagtaaat aatccctgtg ttgtgatgtg catggtcatc ggagcagcgg gatgaactct
     1441 cacaatccta gggaaggaat cgaggtcact agatttggag gcaagtgacc catctcacca
     1501 gtccaaacca tgcacactgg aagtccaaat cagggcttgg ttggtagaga agctctctgg
     1561 catccccagt gcctctcaaa aaaatgggac cctataaatt tggggccggc tgacagacag
     1621 ggctctctaa aaccagcttt cagatctatc ttttctccaa ggagttctaa aacgaacggg
     1681 aagataagaa ggcaaacgag aggagatctg cttcgaagaa agaagatgga caacatgtct
     1741 cccaggctga aagcctttct ctctgaaccc attggggaaa aggatgtggc ctgggtggat
     1801 ggcatcagct gtgagcttgc catcaacttg gtcaccaaag gtttcaacaa ggcctatgtc
     1861 ctgctgggac agttcctttt gatgcacaag aatgaagcag agttccagag gtggatcatc
     1921 tgctgttgtg gcgctacgga gtgcgaggcc cgccagagct ccacctgctt gaaggagtgg
     1981 tgtgcctgtt tcctgtagat acccctgacc tggctgctct acccccaata aaggatacac
     2041 ccatgctacc ta
//
