LOCUS       NM_053631                763 bp    mRNA    linear   ROD 07-FEB-2025
DEFINITION  Rattus norvegicus barrier to autointegration nuclear assembly
            factor 1 (Banf1), mRNA.
ACCESSION   NM_053631
VERSION     NM_053631.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Shen,Q., Eun,J.W., Lee,K., Kim,H.S., Yang,H.D., Kim,S.Y., Lee,E.K.,
            Kim,T., Kang,K., Kim,S., Min,D.H., Oh,S.N., Lee,Y.J., Moon,H.,
            Ro,S.W., Park,W.S., Lee,J.Y. and Nam,S.W.
  TITLE     Barrier to autointegration factor 1, procollagen-lysine,
            2-oxoglutarate 5-dioxygenase 3, and splicing factor 3b subunit 4 as
            early-stage cancer decision markers and drivers of hepatocellular
            carcinoma
  JOURNAL   Hepatology 67 (4), 1360-1377 (2018)
   PUBMED   29059470
  REMARK    Erratum:[Hepatology. 2018 Jul;68(1):391. doi: 10.1002/hep.30114..
            PMID: 29975814]
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Kim,W., Chakraborty,G., Kim,S., Shin,J., Park,C.H., Jeong,M.W.,
            Bharatham,N., Yoon,H.S. and Kim,K.T.
  TITLE     Macro histone H2A1.2 (macroH2A1) protein suppresses mitotic kinase
            VRK1 during interphase
  JOURNAL   J Biol Chem 287 (8), 5278-5289 (2012)
   PUBMED   22194607
REFERENCE   3  (bases 1 to 763)
  AUTHORS   Brachner,A., Braun,J., Ghodgaonkar,M., Castor,D., Zlopasa,L.,
            Ehrlich,V., Jiricny,J., Gotzmann,J., Knasmuller,S. and Foisner,R.
  TITLE     The endonuclease Ankle1 requires its LEM and GIY-YIG motifs for DNA
            cleavage in vivo
  JOURNAL   J Cell Sci 125 (Pt 4), 1048-1057 (2012)
   PUBMED   22399800
REFERENCE   4  (bases 1 to 763)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   5  (bases 1 to 763)
  AUTHORS   Wiebe,M.S. and Traktman,P.
  TITLE     Poxviral B1 kinase overcomes barrier to autointegration factor, a
            host defense against virus replication
  JOURNAL   Cell Host Microbe 1 (3), 187-197 (2007)
   PUBMED   18005698
REFERENCE   6  (bases 1 to 763)
  AUTHORS   Bradley,C.M., Ronning,D.R., Ghirlando,R., Craigie,R. and Dyda,F.
  TITLE     Structural basis for DNA bridging by barrier-to-autointegration
            factor
  JOURNAL   Nat Struct Mol Biol 12 (10), 935-936 (2005)
   PUBMED   16155580
REFERENCE   7  (bases 1 to 763)
  AUTHORS   Dechat,T., Gajewski,A., Korbei,B., Gerlich,D., Daigle,N.,
            Haraguchi,T., Furukawa,K., Ellenberg,J. and Foisner,R.
  TITLE     LAP2alpha and BAF transiently localize to telomeres and specific
            regions on chromatin during nuclear assembly
  JOURNAL   J Cell Sci 117 (Pt 25), 6117-6128 (2004)
   PUBMED   15546916
  REMARK    GeneRIF: LAP2alpha and BAF transiently localize to telomeres and
            specific regions on chromatin during nuclear assembly
REFERENCE   8  (bases 1 to 763)
  AUTHORS   Furukawa,K.
  TITLE     LAP2 binding protein 1 (L2BP1/BAF) is a candidate mediator of
            LAP2-chromatin interaction
  JOURNAL   J Cell Sci 112 (Pt 15), 2485-2492 (1999)
   PUBMED   10393804
REFERENCE   9  (bases 1 to 763)
  AUTHORS   Lee,M.S. and Craigie,R.
  TITLE     A previously unidentified host protein protects retroviral DNA from
            autointegration
  JOURNAL   Proc Natl Acad Sci U S A 95 (4), 1528-1533 (1998)
   PUBMED   9465049
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB766065.1, BC084726.1 and JAXUCZ010000001.1.
            
            On Aug 2, 2012 this sequence version replaced NM_053631.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC084726.1, DV722875.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676786
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-394               CB766065.1         1-394
            395-737             BC084726.1         366-708
            738-763             JAXUCZ010000001.1  212101523-212101548 c
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..763
                     /gene="Banf1"
                     /gene_synonym="Baf; Bcrp1; L2bp1; L2bp1/Baf"
                     /note="barrier to autointegration nuclear assembly factor
                     1"
                     /db_xref="GeneID:114087"
                     /db_xref="RGD:620662"
     exon            1..81
                     /gene="Banf1"
                     /gene_synonym="Baf; Bcrp1; L2bp1; L2bp1/Baf"
                     /inference="alignment:Splign:2.1.0"
     exon            82..220
                     /gene="Banf1"
                     /gene_synonym="Baf; Bcrp1; L2bp1; L2bp1/Baf"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..367
                     /gene="Banf1"
                     /gene_synonym="Baf; Bcrp1; L2bp1; L2bp1/Baf"
                     /note="Lap2 binding protein 1; breakpoint cluster region
                     protein 1; BAF nuclear assembly factor 1; LAP2-binding
                     protein 1; barrier to autointegration factor 1; Breakpoint
                     cluster region protein, uterine leiomyoma, 1; barrier to
                     autointegration factor"
                     /codon_start=1
                     /product="barrier-to-autointegration factor"
                     /protein_id="NP_446083.1"
                     /db_xref="GeneID:114087"
                     /db_xref="RGD:620662"
                     /translation="MTTSQKHRDFVAEPMGEKPVGSLAGIGDALGKRLEERGFDKAYV
                     VLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL"
     exon            221..763
                     /gene="Banf1"
                     /gene_synonym="Baf; Bcrp1; L2bp1; L2bp1/Baf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaagaacgt tctagctgct tgaggtatcg gcgggagtag ctgagtggcg cgaggagccg
       61 ttaccagagc cggagctgct ggttaatcct gatcaagatg acaacctctc aaaagcaccg
      121 agacttcgtg gcagagccca tgggggaaaa gccagtgggg agcctggccg ggattggtga
      181 tgccctgggc aagaggctgg aggaaagggg ctttgacaag gcgtatgtgg tccttggcca
      241 gtttctggta ctaaagaaag atgaagacct ctttcgagaa tggctaaaag acacatgtgg
      301 tgccaatgcc aagcagtccc gggactgctt tgggtgcctt cgagaatggt gtgatgcctt
      361 cttgtaatgt tctctgggga cccctcagcc cccctagcca cagcatagaa tctccagagt
      421 ctgcagcagg gcagggtgcc tccctgtcct ccacgaagga aaagattgct gttgtcaccc
      481 tcatctccta tgtactccag ggtcttttgg gagttctctc cccccagcat ttcaaccttt
      541 ctgggtttct tgccctcgca tgccttcccc ttcccctccc cctacagttc catggcagca
      601 gttcccagcc ttcctgaatg gattactgcc tccttctccc tcaccatctg ttggatgccc
      661 tttgactcct tttttttggc aaaaacagtc actgtcttta taaaagattt ttaaattaat
      721 aaagctagtg gccttcatac ttgttggtct gtgtcagaga gca
//
