LOCUS       NM_001312663            3710 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus BAI1-associated protein 3 (Baiap3), mRNA.
ACCESSION   NM_001312663
VERSION     NM_001312663.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3710)
  AUTHORS   Zhang,X., Jiang,S., Mitok,K.A., Li,L., Attie,A.D. and Martin,T.F.J.
  TITLE     BAIAP3, a C2 domain-containing Munc13 protein, controls the fate of
            dense-core vesicles in neuroendocrine cells
  JOURNAL   J Cell Biol 216 (7), 2151-2166 (2017)
   PUBMED   28626000
  REMARK    GeneRIF: BAIAP3 functions indirectly in dense-core vesicle
            exocytosis by affecting DCV maturation through its role in DCV
            protein recycling.
REFERENCE   2  (bases 1 to 3710)
  AUTHORS   Wojcik,S.M., Tantra,M., Stepniak,B., Man,K.N., Muller-Ribbe,K.,
            Begemann,M., Ju,A., Papiol,S., Ronnenberg,A., Gurvich,A., Shin,Y.,
            Augustin,I., Brose,N. and Ehrenreich,H.
  TITLE     Genetic markers of a Munc13 protein family member, BAIAP3, are
            gender specifically associated with anxiety and benzodiazepine
            abuse in mice and humans
  JOURNAL   Mol Med 19 (1), 135-148 (2013)
   PUBMED   23698091
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3710)
  AUTHORS   Palmer,R.E., Lee,S.B., Wong,J.C., Reynolds,P.A., Zhang,H.,
            Truong,V., Oliner,J.D., Gerald,W.L. and Haber,D.A.
  TITLE     Induction of BAIAP3 by the EWS-WT1 chimeric fusion implicates
            regulated exocytosis in tumorigenesis
  JOURNAL   Cancer Cell 2 (6), 497-505 (2002)
   PUBMED   12498718
REFERENCE   4  (bases 1 to 3710)
  AUTHORS   Shiratsuchi,T., Oda,K., Nishimori,H., Suzuki,M., Takahashi,E.,
            Tokino,T. and Nakamura,Y.
  TITLE     Cloning and characterization of BAP3 (BAI-associated protein 3), a
            C2 domain-containing protein that interacts with BAI1
  JOURNAL   Biochem Biophys Res Commun 251 (1), 158-165 (1998)
   PUBMED   9790924
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.41800.1,
                                           SRR26643298.59355.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                JAXUCZ010000010.1  14777419-14777516   c
            99-232              JAXUCZ010000010.1  14773133-14773266   c
            233-320             JAXUCZ010000010.1  14772848-14772935   c
            321-401             JAXUCZ010000010.1  14772587-14772667   c
            402-509             JAXUCZ010000010.1  14772246-14772353   c
            510-569             JAXUCZ010000010.1  14771682-14771741   c
            570-636             JAXUCZ010000010.1  14771458-14771524   c
            637-832             JAXUCZ010000010.1  14771168-14771363   c
            833-877             JAXUCZ010000010.1  14770837-14770881   c
            878-955             JAXUCZ010000010.1  14770637-14770714   c
            956-1058            JAXUCZ010000010.1  14770408-14770510   c
            1059-1166           JAXUCZ010000010.1  14769968-14770075   c
            1167-1262           JAXUCZ010000010.1  14769785-14769880   c
            1263-1366           JAXUCZ010000010.1  14769581-14769684   c
            1367-1487           JAXUCZ010000010.1  14769329-14769449   c
            1488-1612           JAXUCZ010000010.1  14768768-14768892   c
            1613-1703           JAXUCZ010000010.1  14768596-14768686   c
            1704-1760           JAXUCZ010000010.1  14768413-14768469   c
            1761-1858           JAXUCZ010000010.1  14768203-14768300   c
            1859-1910           JAXUCZ010000010.1  14768049-14768100   c
            1911-2041           JAXUCZ010000010.1  14767799-14767929   c
            2042-2165           JAXUCZ010000010.1  14767569-14767692   c
            2166-2309           JAXUCZ010000010.1  14767351-14767494   c
            2310-2402           JAXUCZ010000010.1  14767172-14767264   c
            2403-2594           JAXUCZ010000010.1  14766867-14767058   c
            2595-2663           JAXUCZ010000010.1  14766710-14766778   c
            2664-2743           JAXUCZ010000010.1  14766543-14766622   c
            2744-2852           JAXUCZ010000010.1  14766363-14766471   c
            2853-2924           JAXUCZ010000010.1  14766001-14766072   c
            2925-3005           JAXUCZ010000010.1  14765795-14765875   c
            3006-3126           JAXUCZ010000010.1  14765593-14765713   c
            3127-3250           JAXUCZ010000010.1  14765393-14765516   c
            3251-3456           JAXUCZ010000010.1  14765105-14765310   c
            3457-3710           JAXUCZ010000010.1  14764768-14765021   c
FEATURES             Location/Qualifiers
     source          1..3710
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..3710
                     /gene="Baiap3"
                     /note="BAI1-associated protein 3"
                     /db_xref="GeneID:106146145"
                     /db_xref="RGD:10059729"
     exon            1..98
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            99..232
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..3560
                     /gene="Baiap3"
                     /codon_start=1
                     /product="BAI1-associated protein 3"
                     /protein_id="NP_001299592.1"
                     /db_xref="GeneID:106146145"
                     /db_xref="RGD:10059729"
                     /translation="MSTLLDIKSSVLRQVQVCPSFRRKTEQEPEITNSQEPPTGAWKP
                     GDGVEFFAHMRLILKKGDGRQGLPCPEVLLRSGSPAPAEPVDPNRGLRALTQEEVEML
                     YEEALYTVLHRAGTMGPDQVDDEEVLLSYLQQVFGSSSEEHMEAIMRVKKAKAPTYAL
                     KVSVMRAKNLLAKDPNGFSDPYCMLGILPASSAPQESSGQKEQRFGFRKGSKRSSPLP
                     AKCIQVTEVKSSTLNPVWKEHFLLEIEDVNTDQLHLDIWDHDDDVSLAEACRKLNEVI
                     GLKGMTRYFKQIVKSARANGTAGPTEDHTDDFLGCLNIPIREVPVAGADRWFKLEPRS
                     SASRVQGDCHLVLKLITTQRDTAMSQRGRSGFLSYLLLLSRVLRFEHRVEEPNSSSWR
                     GELSGPGNTVLCLHGAQSNLSPLQLAVLHWQVSSRHHQTRTLDYGYLLGLLEDVQAHW
                     EEAASLPQEQEESLADSFSAFSEFGLRLLRQLRDYFPATNSTAVYRLELLLKCLEKLQ
                     LFQPAFEICPFETELSMDIAAALKRGNREWYDQLLNAKSPREQPGPQRLAGLVELADI
                     IYEDLQSCYGVYASLFHGILKVDFFTLTFRQLERLVAEEAWVLTEELSPKMNLEVASG
                     LFELYLTLADTQRFWSCIPGRESRSLALAGIHTPFLPAVKLWLQVLRDQAKWRLQGAV
                     DVDTLEPVDAASKHSSSAATASLCLSHIQELWVRLAWPDPAQAQGLGTQLSQDMCEAS
                     LFYTELLRKKVDTQPGAAGEAVSEQLCVVLNNVELVRRASGQALRGLAWSEGANGLEG
                     VLPRPLLSSIQALDEDLLREAHTVTAHLTSKMVADIRKYVQHISLSPDSIQNDEAVAP
                     LLKYLDEKLALLNDSLVKENLSRVLEALWELLLQAILQALSANRGVSADFYGRFHFTL
                     EALVSFFHAEGQGLPLENLRDGSYKRLEEELRLHKCSTRECIEQFYLDKLKQRSLEQN
                     RFGRLTVRCHYEAAEQRLAVEVLHAADLLPLDANGLSDPFVIVELGPPHLFPLVRSQR
                     TQVKARTLHPVYDELFHFSVPAEACRRRGACVLFTVMDHDWLSTNDFAGEAALGLGGV
                     SGIARPHVGGGVRPGQPITLHLRRPRAQVRSALRMLEGRTNREAQEFVKKLKELEKCM
                     EADL"
     exon            233..320
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            321..401
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            402..509
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            510..569
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            570..636
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            637..832
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            833..877
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            878..955
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1058
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1166
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1262
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1263..1366
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1487
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1488..1612
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..1703
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1704..1760
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1761..1858
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..1910
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..2041
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2042..2165
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2166..2309
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2310..2402
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2403..2594
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2595..2663
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2664..2743
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2744..2852
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2853..2924
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            2925..3005
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            3006..3126
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            3127..3250
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            3251..3456
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
     exon            3457..3710
                     /gene="Baiap3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgctagcg gtcgctgtgc ctcggtgtcc ccagctagtg agaccgcgac gccagcaggg
       61 atccccccga ccctgtggcc ccagaagccc tgtccacggt ggctgccatg tcaaccttgc
      121 tggacatcaa gagcagtgtg ctcaggcagg tgcaggtgtg cccgtccttc cgccgaaaga
      181 cagagcagga acctgagatc acaaactcac aggagccccc cacgggggcc tggaaacctg
      241 gggatggtgt ggagttcttt gcccacatgc gcctcatcct gaaaaagggg gacggcagac
      301 agggcctgcc atgtcccgag gttcttctgc gaagtggttc cccagcccct gctgagcctg
      361 tggaccccaa tcgtggcctg agagccctga cccaggagga ggtggagatg ctctacgagg
      421 aagccttata cacagtcctc caccgggctg gcactatggg ccccgaccag gtagacgacg
      481 aggaggtctt gctaagctac cttcagcagg tgtttggctc cagttctgag gaacacatgg
      541 aggccatcat gcgtgtgaag aaggccaagg cccccaccta tgccctgaaa gtctctgtca
      601 tgcgcgccaa gaaccttctg gctaaagacc ccaatggctt cagtgacccg tactgcatgc
      661 tgggtatcct gccggcctca agtgccccac aggagtcaag tgggcagaag gaacagcgct
      721 ttggcttccg aaagggcagc aagcgtagca gcccgctgcc tgccaagtgt atccaggtca
      781 ccgaggtcaa aagcagcacg ctgaatcctg tctggaagga gcacttcctg cttgaaattg
      841 aagatgtcaa tacagaccag ctgcacctgg acatctggga ccacgatgat gacgtttccc
      901 tggcggaagc atgcaggaag ctgaatgaag ttattggcct gaagggaatg accagatact
      961 tcaaacagat tgtcaagtcg gcccgtgcaa atgggacagc aggacccact gaggaccaca
     1021 ctgatgactt cctggggtgt ctcaacatcc ctatccggga ggtgcctgtg gcaggtgctg
     1081 accgctggtt taagctggaa ccacgctcca gtgcctcccg tgtgcagggg gactgccacc
     1141 tggtcctgaa gctgatcacc acccagaggg acactgctat gagtcagcgc ggacgttcgg
     1201 gcttcctgtc ctacctgttg cttctcagcc gtgtgctgcg gtttgaacac cgagtggagg
     1261 agcccaattc cagcagttgg cgtggcgagc ttagcgggcc tgggaacaca gtcctttgtc
     1321 tgcatggagc ccaaagcaat ctgtccccct tgcagctggc tgtgctgcac tggcaagtca
     1381 gtagccgtca tcatcagaca cgcaccctgg actatgggta cctgctgggt ctgctggaag
     1441 atgtgcaggc acactgggag gaggcagctt cactgcctca ggagcaggag gagagcctgg
     1501 ctgacagctt ttctgccttc tccgagttcg ggctgagact gctgcgccag ctccgggatt
     1561 acttccccgc caccaacagc acggctgtgt atcgcttgga gctgctgctg aagtgcctgg
     1621 agaagctaca gcttttccaa ccagcctttg agatctgccc ctttgagacc gagctcagta
     1681 tggacattgc ggctgccctg aagcggggca accgggagtg gtacgaccag ctcctgaacg
     1741 ccaagagtcc ccgagagcag cccgggccgc agcgcctagc ggggcttgtt gagcttgcag
     1801 acatcatcta cgaggacttg cagtcctgct acggggtcta cgccagcctc ttccacggta
     1861 tccttaaggt ggacttcttc acccttacct tccggcagct ggaacgtctg gtggccgagg
     1921 aggcatgggt gctgacagaa gagctgagcc ccaagatgaa cttagaggtg gcctcagggc
     1981 tcttcgagct ctacctgacc ctggcagaca cccagcgttt ctggagctgc atccctggac
     2041 gggaaagccg ctccctagcc ctggctggca tccacacccc atttctgcca gccgtgaaac
     2101 tctggctgca ggtgctgcgg gaccaggcca agtggcgcct tcagggagcc gtggacgtag
     2161 acacgctgga gcctgtggac gcggcttcca aacacagcag ctctgcagcc accgccagtc
     2221 tctgccttag tcacatccag gagctctggg tccgcctggc ttggcccgac ccggcccagg
     2281 cccaggggct aggcactcag ctcagccagg acatgtgcga ggcctccctc ttctacacgg
     2341 agctgctgag gaagaaggtg gacacccagc caggggctgc tggagaggca gtgagcgagc
     2401 agctctgcgt ggtgctcaac aacgtggagt tggtgcgcag agcttcgggg caggcactaa
     2461 gaggactggc gtggtccgaa ggggccaatg ggctggaggg agtgctcccc cgtcctctgc
     2521 tcagcagcat acaggccctg gatgaagacc ttctgcggga ggcccacact gtgacagcac
     2581 acctgacttc caagatggtg gcagacatcc ggaagtacgt acagcacatc agtctgtctc
     2641 cggactccat tcagaatgat gaggctgtag ccccactcct gaagtaccta gatgagaagc
     2701 tggccttgct gaacgactcg ctggtgaagg aaaacctgag cagggtccta gaagccctct
     2761 gggagctgct tctacaggcc attctgcagg cgctgagtgc aaacaggggt gtctctgccg
     2821 atttctatgg acgcttccac ttcacactgg aggctctcgt cagtttcttc catgctgagg
     2881 gccaggggct gcccctggag aacctgaggg atggaagcta caagaggctg gaggaggagc
     2941 tgcggctaca caaatgctcc acccgagagt gcattgagca gttctacctg gacaagctca
     3001 agcagaggtc cctggagcag aaccggtttg gccgcctgac cgtccggtgt cactacgaag
     3061 cggctgagca gaggctagct gtggaggtgc tgcacgcggc ggacttgctg cctctggacg
     3121 ccaatggcct gagtgacccc tttgtgatcg tggagcttgg cccaccacac ctcttcccac
     3181 tggtccgcag ccagaggacc caagtcaaag ctcggacact gcacccggtg tatgatgagc
     3241 tcttccactt ctccgtgcct gcagaggcgt gccgtcgccg cggggcctgt gtgctcttca
     3301 ccgtcatgga ccacgactgg ctgtccacca atgactttgc aggggaagca gccctaggcc
     3361 tgggtggtgt cagtggcatc gcaaggccgc atgtgggagg gggcgtgagg cccggtcagc
     3421 ccatcacact acatctgcgc aggcccagag ctcaggtgag gtctgcactg cggatgctag
     3481 aaggccgcac caaccgagaa gcacaggagt tcgtcaagaa actcaaggag ctggagaagt
     3541 gtatggaggc tgacctctga gcatcctgat ggtcgcagtc ccgggcctcg ccatttccct
     3601 gtgcagccca ctttgtgcag caaggggttc tggaggcccc tccctcacca tgtgacctgc
     3661 ccactctggt tggaccctgt ggcttctgtc tgccctggcc gtgtcttttg
//
