LOCUS       XM_006234794            4603 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus bromo adjacent homology domain
            containing 1 (Bahd1), transcript variant X1, mRNA.
ACCESSION   XM_006234794
VERSION     XM_006234794.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006234794.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4603
                     /gene="Bahd1"
                     /gene_synonym="RGD1563127"
                     /note="bromo adjacent homology domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 118 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:362194"
                     /db_xref="RGD:1563127"
     CDS             317..2662
                     /gene="Bahd1"
                     /gene_synonym="RGD1563127"
                     /codon_start=1
                     /product="bromo adjacent homology domain-containing 1
                     protein isoform X1"
                     /protein_id="XP_006234856.1"
                     /db_xref="GeneID:362194"
                     /db_xref="RGD:1563127"
                     /translation="MGKLAWRDSMTHTRRKSLPMLSSGPTGRGEPLQMEDSNVEQGAE
                     DVEPGMPESPGHLTGRRKNYPLRKRSLVPEKPKACKVLLTRLENVAGPRSADEADELP
                     PDLPKAPSPTPSSEDAGLVQPRKRRLASLNAEALNNLLLEREDTSSLAGARRSRGGDP
                     HRSRDRATGSWSFSKKRPRLGDLGEGSRDLSPELAPDEGARRDGDPAPKRLASLNAAA
                     FLKLSQERELPLRPSRAQAEADGRSTEPLAPKVLRPKVNGKNCPKVRQGAGSGEATGP
                     PNWQEQPEERWPSAPPRGPPIQPSHQAPGKALENPLRPNLPLLMGGQAALKPEPGRPG
                     EESPAPKQELHQPSFPAPQLAPLPMPGNPADYSGPCGGPELTALGGFYLYCGQDGLQC
                     GSYSPCPMLPEGKLSPVAAPNEGLLMAPSSVPSGVPFQHPPWSASRYCSSEDTGANGY
                     SICGVLPLSLTHIGTTCGGCPYKMPFTAEGCRSLGQLEFPLPEAGHPASPAHPLLGCP
                     VPSVPPAAEPIPHLQTPISEPQTVARACPQSAKPPSGSKSGLRTGSSCRHTVRSKAAR
                     RPSHPKQPRAQRPRPRRRRRRRTNGWVPVGAACEKAVYVLDEPEPAIRKSYQAVERHG
                     ETIRVRDTVLLKSGPRKTSTPYVAKISALWENPESGELMMSLLWYYRPEHLQGGRSPS
                     MHEPLQNEVFASRHQDQNSVACIEEKCYVLTFAEYCRFCAMAKRRGEGLPSRKTALVP
                     PSADYSTPPHRTVPEDTDPELVFLCRHVYDFRHGRILKNPQ"
     polyA_site      4603
                     /gene="Bahd1"
                     /gene_synonym="RGD1563127"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gctcctgctc ctttacctcc caaagcgccc ctcccccgcc tgaattggga atgaggcttt
       61 gttcaggggt ggactcggta tttctcaaga acctactgtg tgcacattac gactccttga
      121 agtgaagtcc tgggctggct ctgacgctac aaggtgtcca ggacacggcc ccttcccgca
      181 cctcccaggg acttcccacc ccttcgtatg acctcagcct gctttgccca cccacccagc
      241 tgaccccgag agcgtgctca ggcttggaaa agcacgtctg tgggtgtgag agacggagcc
      301 acagcataag gtgactatgg ggaagctagc ttggagggat tccatgacac acactcggag
      361 gaagtccctt cctatgctga gttccggccc cactggccga ggggagcccc tgcagatgga
      421 agacagcaat gtggagcagg gggccgagga cgtggagcca ggcatgcctg agagccctgg
      481 acaccttaca ggacgccgca agaactaccc tttgcgcaaa cgttcactgg ttccagagaa
      541 gcccaaagct tgcaaagtgc tgctgactcg cctggaaaat gtggctggtc cgcgaagtgc
      601 agatgaggct gacgagctgc cccctgacct gcccaaagcc cctagtccaa ccccatccag
      661 tgaggatgct ggtcttgtgc agccccgcaa gcggcgccta gcctccctta acgcagaggc
      721 ccttaataac ctgctgctgg agagggagga caccagcagc ctggcaggtg cccgccgaag
      781 cagaggtggg gaccctcacc gcagccggga ccgggccaca gggtcctggt ctttctctaa
      841 gaagcgacct cggctgggag atcttggaga aggaagtagg gacctgtccc cagagctcgc
      901 cccagatgaa ggtgcccgta gagatggaga cccagctcct aagagactgg ctagcctaaa
      961 tgccgctgcc ttcttaaaac tcagccagga gcgggagcta cctcttcgac cttctcgtgc
     1021 ccaagcagaa gcagatgggc gctccactga gcccctggcg cccaaagtcc tgcggccgaa
     1081 ggtcaatggc aagaactgtc ccaaggttcg gcaaggggct ggctccgggg aggccacggg
     1141 gccccccaac tggcaggagc aacctgagga gcgttggcca tctgctcctc ctcgagggcc
     1201 acccatccag ccatctcacc aggccccggg caaagctctg gagaacccct tgcgccccaa
     1261 cctgcctctg ctgatgggtg ggcaggcagc cctgaagccg gagcctgggc gtccgggcga
     1321 ggagtcacct gcccccaagc aggaactgca tcagccctct ttccctgcac ctcagctggc
     1381 tccgctgccg atgcctggca acccagccga ctacagtggt ccatgtggag ggcctgagct
     1441 cactgcactg ggcggcttct acctgtactg tggccaagat gggctgcaat gtgggagtta
     1501 ctccccttgt cccatgctcc cagaaggcaa gctgtctccg gtggcagccc ccaatgaggg
     1561 gctgctcatg gccccaagct cagtgccctc tggcgttcct ttccagcacc ctccttggag
     1621 cgcatctcga tactgctcca gcgaggacac tggagcaaat ggctacagca tctgtggagt
     1681 gttgcctctg tctctcactc atattggcac tacctgtggt ggctgcccct acaaaatgcc
     1741 tttcactgca gaaggctgca ggtcgctcgg ccaattggaa tttcctctcc cagaagctgg
     1801 ccacccagcc tcacctgctc accccctcct gggatgccct gtacccagtg tgccacctgc
     1861 agcagagcct attccccatc ttcaaacgcc catctcggag ccccagacag tagcccgggc
     1921 gtgccctcag agcgccaagc ctccaagcgg ctccaagtca ggtctgcgca caggctccag
     1981 ctgtcggcat actgtgagga gcaaggctgc ccgcaggccc agccacccca agcagccacg
     2041 tgcccagcgc ccacgtcctc gccgccgccg gcgccgccgt actaatggct gggtgcctgt
     2101 aggtgctgcc tgcgagaagg cagtgtatgt cctggatgag ccagaacctg ccatcagaaa
     2161 gagttaccag gcagttgagc gacatggaga gacaatccga gtccgagaca ctgtcctcct
     2221 caagtcaggt ccaagaaaga cgtctacacc ttatgtggcc aagatctctg ccctctggga
     2281 gaaccctgag tcaggagaac tgatgatgag cctcctgtgg tattacaggc ctgagcactt
     2341 acagggaggc cgcagcccca gcatgcatga gcctttgcag aatgaagttt ttgcgtcgag
     2401 acatcaggac cagaacagtg tggcctgcat tgaagagaag tgctatgtgc taacctttgc
     2461 tgagtactgc agattctgtg ccatggccaa gcgccggggt gagggccttc ccagccggaa
     2521 gacagcactg gtgcccccgt ctgcagacta ctccacccca ccacaccgca cagtgccaga
     2581 ggacacagac ccagagctgg tgttcctttg ccgccatgtc tatgacttcc gccatggccg
     2641 catcctcaag aacccccagt agcctcttca tgctcatagt ggggctgcct tcgggaagat
     2701 ggggcctggg gcaggggggc actgcttgaa gcacagcact tggttaaggg gccatgggtt
     2761 gctggcctgt ggttctctct ggggggaggg agggcagggg ccctatggat tcagggcccc
     2821 ttgggagaaa gggaggccag gatatgagaa aggtatctaa accctcagtt tggcctgggg
     2881 tgcccatctg tgcactccag ggtagagaat cccgaagatt tggtcttccc tgaggttggg
     2941 tcaagcctga gggacatggc caaggaaggg cagggacaag tagaaggggt aaggtccttc
     3001 cagaaccagg cctaccaggc ccttttctag cctccctcag gccttccaag gggagcagga
     3061 gccagcttta cctcacccac tgtgacctgc tgcttccttg tcagcctggg accagactct
     3121 gcagattcta gcacagctct ggcttgttcc agtgagtcaa gagagccgag ctttgacttc
     3181 ctcttcctgg actcgaggct tttccctggc tttcttcctt taccaccgca gtagccactg
     3241 gtgctggcac aagttgaccc tgcccacccc tgggtgtcag cctcatgtca gctcgccatt
     3301 aagggtcacc cagcaggtct ggcttcccag aatactggtc agcccggagt tcatcatgtc
     3361 tggaagagca gatgcgtgct gggagagggt gggggcaggg gacaaggaaa attgctacct
     3421 gatttgttga agatttctcc tcttgcctta tacttggagg ttctgggaaa cctcttgcag
     3481 aacttcacac gtgactcttc aagccacacc cacctgaagt caaaccaaag gagtgttgtg
     3541 gctcctcttg ccctgccacc ccttacccta gtcttttgta gattgcacta atttacatcc
     3601 cagtgaaaac caacactgta tcagtccaca gacctgagct gcagccactt cctctaggag
     3661 ctaggccctg catttttcag ttcattcctg ttgcccagag attattctag cctcatgctc
     3721 cccacaagtg attgattcat cagaaggctc agtgccctgt ggtcctgggc tgaggggctg
     3781 aagcctgact atttgtacct tgtttgtacc aaagaggagc atgggatcag ggaaggtgca
     3841 gtgcagggaa gtgtggtttg ggcccagcgc tggccacctg tcacccaggc aattctacaa
     3901 gggcgtgttc tgggggcatc attctgagga catggcactg gggtaaggat agtctgacac
     3961 aggctacttt gggaggtgga agtgaaccct gacagcaaag acctagcaac cccaggtcca
     4021 gaccctgatc cttagaagat aaactgctcc tggtgggtaa ttgggctgat gaggcctgca
     4081 ggcctcacgg gttaatttct tttgttttga aagccctgtc ccaaacccaa agggaagact
     4141 tcacattgaa taagctcttt ggaggaagcc atcagtctga aagagcgagg cgtaagtaag
     4201 ttgtcaagag tggagatgga cccctttgga gtctgctcct gctagagtgc tgccaaggag
     4261 cccagcctcg cccacaggag aggagataag gccctcctag gaggcaaggg ctgctgccca
     4321 gatgttaaat gcttttggaa tctctttaga tgtggaaata ttttttcgaa catgaaaatg
     4381 cagctggtag aatttcaatg gaagtataat ccatgtaaaa tatattttag ttgatatttt
     4441 gtaaaatgca ctttttgtgt gtgtcgatcc tggtttccca gatctgtatt tcagtgttta
     4501 caagggaggg gcacctttcc taacctccct tttgacagag attagaagta cttctttaag
     4561 aaaaataaat aaatttgaga aattgtattg atttagaaaa gaa
//
