LOCUS       NM_001107494            1037 bp    mRNA    linear   ROD 12-NOV-2024
DEFINITION  Rattus norvegicus B9 domain containing 2 (B9d2), mRNA.
ACCESSION   NM_001107494 XM_001070194 XM_218345
VERSION     NM_001107494.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Caenen-Braz,C., Bouzhir,L. and Dupuis-Williams,P.
  TITLE     New functions of B9D2 in tight junctions and epithelial polarity
  JOURNAL   Sci Rep 14 (1), 25293 (2024)
   PUBMED   39455645
  REMARK    GeneRIF: New functions of B9D2 in tight junctions and epithelial
            polarity.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Chih,B., Liu,P., Chinn,Y., Chalouni,C., Komuves,L.G., Hass,P.E.,
            Sandoval,W. and Peterson,A.S.
  TITLE     A ciliopathy complex at the transition zone protects the cilia as a
            privileged membrane domain
  JOURNAL   Nat Cell Biol 14 (1), 61-72 (2011)
   PUBMED   22179047
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1037)
  AUTHORS   Dowdle,W.E., Robinson,J.F., Kneist,A., Sirerol-Piquer,M.S.,
            Frints,S.G., Corbit,K.C., Zaghloul,N.A., van Lijnschoten,G.,
            Mulders,L., Verver,D.E., Zerres,K., Reed,R.R., Attie-Bitach,T.,
            Johnson,C.A., Garcia-Verdugo,J.M., Katsanis,N., Bergmann,C. and
            Reiter,J.F.
  TITLE     Disruption of a ciliary B9 protein complex causes Meckel syndrome
  JOURNAL   Am J Hum Genet 89 (1), 94-110 (2011)
   PUBMED   21763481
  REMARK    Erratum:[Am J Hum Genet. 2011 Oct 7;89(4):589. Zaghloul, Norran A
            [corrected to Zaghloul, Norann A]]
REFERENCE   4  (bases 1 to 1037)
  AUTHORS   Williams,C.L., Li,C., Kida,K., Inglis,P.N., Mohan,S., Semenec,L.,
            Bialas,N.J., Stupay,R.M., Chen,N., Blacque,O.E., Yoder,B.K. and
            Leroux,M.R.
  TITLE     MKS and NPHP modules cooperate to establish basal body/transition
            zone membrane associations and ciliary gate function during
            ciliogenesis
  JOURNAL   J Cell Biol 192 (6), 1023-1041 (2011)
   PUBMED   21422230
REFERENCE   5  (bases 1 to 1037)
  AUTHORS   Bialas,N.J., Inglis,P.N., Li,C., Robinson,J.F., Parker,J.D.,
            Healey,M.P., Davis,E.E., Inglis,C.D., Toivonen,T., Cottell,D.C.,
            Blacque,O.E., Quarmby,L.M., Katsanis,N. and Leroux,M.R.
  TITLE     Functional interactions between the ciliopathy-associated Meckel
            syndrome 1 (MKS1) protein and two novel MKS1-related (MKSR)
            proteins
  JOURNAL   J Cell Sci 122 (Pt 5), 611-624 (2009)
   PUBMED   19208769
REFERENCE   6  (bases 1 to 1037)
  AUTHORS   Town,T., Breunig,J.J., Sarkisian,M.R., Spilianakis,C., Ayoub,A.E.,
            Liu,X., Ferrandino,A.F., Gallagher,A.R., Li,M.O., Rakic,P. and
            Flavell,R.A.
  TITLE     The stumpy gene is required for mammalian ciliogenesis
  JOURNAL   Proc Natl Acad Sci U S A 105 (8), 2853-2858 (2008)
   PUBMED   18287022
REFERENCE   7  (bases 1 to 1037)
  AUTHORS   Blacque,O.E., Perens,E.A., Boroevich,K.A., Inglis,P.N., Li,C.,
            Warner,A., Khattra,J., Holt,R.A., Ou,G., Mah,A.K., McKay,S.J.,
            Huang,P., Swoboda,P., Jones,S.J., Marra,M.A., Baillie,D.L.,
            Moerman,D.G., Shaham,S. and Leroux,M.R.
  TITLE     Functional genomics of the cilium, a sensory organelle
  JOURNAL   Curr Biol 15 (10), 935-941 (2005)
   PUBMED   15916950
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473979.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001070194.1, XM_218345.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1037
                     /gene="B9d2"
                     /gene_synonym="RGD1566122"
                     /note="B9 domain containing 2"
                     /db_xref="GeneID:308443"
                     /db_xref="RGD:1566122"
     exon            1..325
                     /gene="B9d2"
                     /gene_synonym="RGD1566122"
                     /inference="alignment:Splign:2.1.0"
     CDS             238..765
                     /gene="B9d2"
                     /gene_synonym="RGD1566122"
                     /note="B9 protein domain 2"
                     /codon_start=1
                     /product="B9 domain-containing protein 2"
                     /protein_id="NP_001100964.1"
                     /db_xref="GeneID:308443"
                     /db_xref="RGD:1566122"
                     /translation="MAEVHVIGQIIGATGFSEGSLFCKWGIHTGAAWKLLSGVREGQT
                     QVDTPQTGDMAYWSHPIDLHFATKGLQGWPRLHLQVWSQDSFGRCQLAGYGFCHVPSS
                     PGTHQLDCPTWRPLGSWREQLARAFVGGGPQLLHADTIYSGADRYRLHTAAGGTVHLG
                     IGLLLRHFDRYGVEC"
     exon            326..451
                     /gene="B9d2"
                     /gene_synonym="RGD1566122"
                     /inference="alignment:Splign:2.1.0"
     exon            452..1037
                     /gene="B9d2"
                     /gene_synonym="RGD1566122"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctggtgcaga ttcccgcacc tctcgggggt ggggggtctt ccccattttt cttgggcttt
       61 tctgggaagg tggcttgtat ctgtgatgaa gaccacattg tcagtgtgtt agtggaatta
      121 gcttagaatc acagtactgt tcttcatgct atattggctt cagttttccc agttgtccaa
      181 aggaaataat aagtttacct cacagagctg tgattggatt tttcctttcc tagagccatg
      241 gccgaagtgc acgtgatcgg gcagatcata ggggccacgg gtttctctga aggtagcctc
      301 ttctgcaagt ggggcatcca cacaggggcc gcatggaagc tcctgtcagg cgtccgggaa
      361 ggccagacgc aggtagacac accccagaca ggggacatgg cttactggtc ccaccccatt
      421 gacctgcact ttgctacaaa aggtctccaa ggttggcctc gacttcatct ccaggtgtgg
      481 tcccaggaca gctttggccg ctgccagctt gctggctatg gcttttgcca tgtgcctagc
      541 agcccaggca ctcaccagct ggactgccct acatggaggc ccctgggtag ttggagggag
      601 cagctagcac gggctttcgt gggtggcggg ccacagctgc tgcacgcaga caccatctac
      661 agcggggccg accgctaccg cctgcacacg gccgcgggtg gcacagtgca ccttggtatc
      721 ggtctgctgc tgcgccactt tgatcgctac ggtgtggagt gttgagggac ttcactgcca
      781 ccagtcacca tcatccacag ccctgcgcac acgacggcac agcagtgaaa caggcacata
      841 gactctggag actgtcagtc ctgatctcac ccaagtcatg gcccttatgc catggactgc
      901 aaggccagga actacccctg tggcccatgc tccactgaat taccgggtaa aagtctgtga
      961 gttggaggga cttgaggaga gcatgctgtt tggcactgtc aggggcactt aataaaagca
     1021 tgcatttctc ataggta
//
