LOCUS       NM_001012018            2106 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus beta-1,4-galactosyltransferase 4 (B4galt4), mRNA.
ACCESSION   NM_001012018 XM_221439
VERSION     NM_001012018.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2106)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2106)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081866.1.
            
            On Feb 11, 2005 this sequence version replaced XM_221439.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081866.1, SRR8487227.81253.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132262,
                                           SAMD00132263 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q21"
     gene            1..2106
                     /gene="B4galt4"
                     /note="beta-1,4-galactosyltransferase 4"
                     /db_xref="GeneID:303923"
                     /db_xref="RGD:1307880"
     exon            1..95
                     /gene="B4galt4"
                     /inference="alignment:Splign:2.1.0"
     exon            96..494
                     /gene="B4galt4"
                     /inference="alignment:Splign:2.1.0"
     CDS             242..1276
                     /gene="B4galt4"
                     /EC_number="2.4.1.90"
                     /EC_number="2.4.1.275"
                     /note="b4Gal-T4; beta4Gal-T4; beta-1,4-GalTase 4;
                     UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 4;
                     UDP-galactose:beta-N-acetylglucosamine
                     beta-1,4-galactosyltransferase 4; UDP-Gal:betaGlcNAc beta
                     1,4-galactosyltransferase, polypeptide 4; nal synthase;
                     N-acetyllactosamine synthase; lactotriaosylceramide
                     beta-1,4-galactosyltransferase;
                     beta-N-acetylglucosaminyl-glycolipid
                     beta-1,4-galactosyltransferase"
                     /codon_start=1
                     /product="beta-1,4-galactosyltransferase 4"
                     /protein_id="NP_001012018.1"
                     /db_xref="GeneID:303923"
                     /db_xref="RGD:1307880"
                     /translation="MGCNPPYLLSYRLRLLLLFTLCLTVLGWATSNYFVGAIQVIPRA
                     KNFMATLHKVMYLGNEETLGHGAAMKKAELANCPSVSPNLRGQNKLVFKPDLTLEEVQ
                     AKNPKVSRGRYRPEECKALQRVAVLIPHRNREKHLIYLLEHLHPFLQRQQLDYGIYVI
                     HQTGSKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYTCGDQPKHLVVG
                     RNSTGYRLRYSKYFGGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELHKMKISR
                     PKPDVGKYTMIFHTRDKGNEVNGSRMKLLQQMSRVWKTDGLSSCSYRLLSVEHNPLYA
                     NITVDFWTAA"
     exon            495..727
                     /gene="B4galt4"
                     /inference="alignment:Splign:2.1.0"
     exon            728..915
                     /gene="B4galt4"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1038
                     /gene="B4galt4"
                     /inference="alignment:Splign:2.1.0"
     exon            1039..1143
                     /gene="B4galt4"
                     /inference="alignment:Splign:2.1.0"
     exon            1144..2081
                     /gene="B4galt4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccttccccgg gcggcctcac ggtggctgcg tccggggtga gtacgccggg cccgagctgc
       61 gcgctccgag cggccatcgc tgagctgcga gccggtgatc tctgggaggg agctgctgaa
      121 caggggcaaa ccttgcctca tgaattgcca tcaaatcctc ggccatactg gaagagtgca
      181 aattgaaacc tgctcactgc ggctgaagca gagataacgg attactcaca aaccgagaga
      241 catgggctgc aacccacctt acctcctctc ctacagatta cggttgctgc tgctctttac
      301 cttatgcctg acagtgcttg ggtgggccac cagcaactac tttgtgggtg ctattcaagt
      361 aattcccagg gcaaagaact tcatggctac tttacacaag gtcatgtatt tggggaatga
      421 agaaactctg ggccatgggg cagccatgaa gaaagcagag cttgctaact gcccttcggt
      481 gtctccaaac ctcagagggc agaacaagct tgtttttaag ccggacctca ctttggagga
      541 agttcaggct aaaaacccca aagtgtccag aggccggtat cgcccagagg agtgtaaggc
      601 cctgcagcgg gtggcggtcc tcatccccca ccggaacaga gagaagcacc tgatatacct
      661 gctggaacac ctgcatccct tcctgcagag gcagcagctg gactacggca tctacgtcat
      721 ccaccagacc ggaagtaaaa agtttaaccg ggccaagctc ctcaacgtgg gctatctgga
      781 agctctcaag gaggagaact gggactgctt catattccac gacgtggacc tggtgcctga
      841 gaatgacttc aacctctaca cctgcgggga tcagcccaag cacctggtcg tgggccggaa
      901 cagcactggc tacaggttgc gttacagtaa atattttggg ggcgttactg ccctcagcag
      961 agaacagttt ttcaaggtga atggattctc taacaactac tggggatggg gaggagaaga
     1021 cgatgacctc agactcaggg ttgagctgca taaaatgaaa atatcccggc ccaagcctga
     1081 cgtgggcaag tacaccatga tcttccacac cagagacaaa ggcaacgagg tgaacgggag
     1141 ccgaatgaag ctgttgcagc agatgtcacg ggtctggaaa acagatggct tatcgagctg
     1201 ctcttacaga ttgctctctg tggaacacaa ccctttatac gccaacatca cagtggattt
     1261 ctggaccgcc gcgtgacctg gatcttctga tgacgcctgg aactgatgat tcgattgtaa
     1321 tagtgttggc ctagaggctt ccctagtagc acacgttaag aacttgttcc agctaatgat
     1381 ttggctgaaa attttccgtt ctctcagcag agctcttggt tatgtagaat gtagaaccgt
     1441 agtagcaaga cagctttctt ggttgttttg atcacggctg tgaaatgttg taatgcacac
     1501 acttgaagga ctctagacag gaggacgtag taaaagcaac ttgtgaactg tgtccttgaa
     1561 ggattcactt cagcagtgta tcatgagatt aaaaagtggg gagcaaaatt cccaagcgtc
     1621 ttagagaacc agaattgcta ggtctaagac agaaaggtac taagagatgt ttctgttact
     1681 cagtgtacgt ggccatcttc gaggtggtgg attccacatg cgaagaaagc cacaaagtca
     1741 cgcaccagat gccacagatg tgacagtgaa gagccggcta aggacagagt atggagtgaa
     1801 ctggcagcgg tccctgtgct ggctgctgcc accaatcccc tgtggtggat gcctccttgt
     1861 cagaaacacc ttcccgtcta tggccgcccg accctgaatg taccagcctc ttcagaggca
     1921 cttgccagta ataacccacc agagaacaca ctgtctatta gtttttaaag catttttata
     1981 aaacgatttt gtacatgtag gatatggatg agcagtttat aagccacaca atgtctgaga
     2041 atatgtctat agagtatctc tgtagtaaaa tgtgaaaaag caaaaaaaaa aaaaaaaaaa
     2101 aaaaaa
//
