LOCUS       NM_001107562            3546 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus beta-1,4-N-acetyl-galactosaminyl transferase 4
            (B4galnt4), mRNA.
ACCESSION   NM_001107562 XM_001059522 XM_219477
VERSION     NM_001107562.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3546)
  AUTHORS   Gotoh M, Sato T, Kiyohara K, Kameyama A, Kikuchi N, Kwon YD,
            Ishizuka Y, Iwai T, Nakanishi H and Narimatsu H.
  TITLE     Molecular cloning and characterization of
            beta1,4-N-acetylgalactosaminyltransferases IV synthesizing
            N,N'-diacetyllactosediamine
  JOURNAL   FEBS Lett 562 (1-3), 134-140 (2004)
   PUBMED   15044014
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473953.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001059522.1, XM_219477.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ211564.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132262, SAMD00132265
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3546
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..3546
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /note="beta-1,4-N-acetyl-galactosaminyl transferase 4"
                     /db_xref="GeneID:309105"
                     /db_xref="RGD:1310052"
     exon            1..322
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..3273
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /EC_number="2.4.1.244"
                     /note="beta
                     1,4-N-acetylgalactosaminyltransferase-transferase 4"
                     /codon_start=1
                     /product="N-acetyl-beta-glucosaminyl-glycoprotein
                     4-beta-N-acetylgalactosaminyltransferase 1"
                     /protein_id="NP_001101032.1"
                     /db_xref="GeneID:309105"
                     /db_xref="RGD:1310052"
                     /translation="MPWFPVKKVRKQMKLLLLLLLLTCAAWLTYVHRSLVRPGRALRQ
                     RLGYGRDGEKLTGVTDSRGVRVASSTQRAEDSSESHEEEQAPEGRGPNMLFPGGARKP
                     PPLNLTHQTPPWREEFKGQVNLHVFEDWCGGAVGHLRRNLHFPLFPHTRTTVTKLAVS
                     PKWKNYGLRIFGFIHPARDGDVQFSVASDDNSEFWLSLDESPAAAQLIAFVGKTGSEW
                     TAPGEFTKFSSQVSKPRRLMASRRYYFELLHKQDDKGSDHVEVGWRAFLPGLKFEIIG
                     SAHISLYTDESSLKMDHVAHVPQSPASHVGGYPAQEEPSADMLHPDPRDTFFLTPRME
                     PLSLENVLEPCAYAPTYVLKDFPIARYQGLQFVYLSFIYPNDHTRLTHMETENKCFYR
                     ESPLYLERFGFYKYMKMDKEEGEEDEEEEVQRRAFLFLNPDDFLDDEDEQELLDSLEP
                     TDASLQQSHRTPTPAASPETTASPTPPTTSPLDEQTLRHSRALNWAPRPLPLFLGRAP
                     PPRTSEKSSSKVYVTRVRPGQRASPRALRDSPWPPFPGVFLRPKPLPRVQLRVPPHPP
                     RTQGYRTSSPKVTELRPPVRAQTNQGGQEGQLHGQGLMVPTVDLNSSVETQSVTSFLS
                     LSQVSRPQLPGEGEEGEDGAPGDEATSEDSEEEEEQAAGRPLGRWREDAIDWQRTFSV
                     GAMDFELLRSDWNDLRCNVSGNLQLPETEAVDVVAQYMERLNARHGGRFSLLRIVNVE
                     KRRDSARGSRFLLELELQERGGSRQRLSEYVFLRLPGARVGDEDGDSPEPPPAASSHP
                     DSRPELCRPLHLAWRQDVMVHFIVPVKNQARWVVQFLADMTALHVQTGDSYFNIILVD
                     FESEDMDVERALRAAQLPRYQYLRRTGNFERSAGLQTGVDAVEDPSSIVFLCDLHIHF
                     PPNILDSIRKHCVEGKLAFAPVVMRLGCGSSPWDPHGYWEVNGFGLFGIYKSDFDRVG
                     GMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRHFYHHYHSKRGMWATRSRKGARA
                     HRS"
     exon            323..426
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            427..522
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            523..618
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            619..709
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            710..810
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            811..878
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            879..957
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            958..1024
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            1025..1159
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            1160..1269
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            1270..1370
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1471
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            1472..2357
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            2358..2641
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            2642..2795
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            2796..2868
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            2869..3022
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            3023..3149
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
     exon            3150..3546
                     /gene="B4galnt4"
                     /gene_synonym="RGD1310052"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaccgcggc ccgagcagcc cgggagtcgt ggccgaatcc cgtagccccc gcagcggaca
       61 aaggaccatg cggtgctgca ggcgctgagc gcagcagggt gggccggggg atgtggggcg
      121 gggcaggcgg ggccggaggg ccgcagcgac gcccctgagt gtggcgccac gatgccgtgg
      181 ttcccggtga agaaggtccg caagcagatg aagctgctgc tgctgttgct gctgctcacc
      241 tgcgccgcgt ggctcacgta tgtgcaccgg agcctggtgc gcccgggccg cgcgctacgc
      301 cagcggctgg gctacgggcg agacggtgag aagctgactg gtgtgaccga tagccggggt
      361 gtccgggtgg catcatccac acagagggca gaggactcta gtgaaagcca tgaagaggag
      421 caggcgcctg aggggcgggg cccaaacatg ctgtttcctg gaggagctag aaagccaccc
      481 ccactgaacc tcacccatca gacaccccca tggcgggaag agttcaaagg acaggtgaac
      541 ctgcacgtgt ttgaggactg gtgtgggggt gctgtgggcc acttgagaag aaacctacac
      601 ttcccactat ttcctcatac ccgcacgacg gtgacaaagt tagccgtgtc ccctaagtgg
      661 aagaactatg gactccggat ttttggcttc atccacccag ccagagatgg agacgtccag
      721 ttctctgtgg cttcggatga caactctgag ttctggctga gtttggatga gagcccagca
      781 gctgctcagc ttatagcctt tgtgggcaag actggctctg agtggaccgc acctggagaa
      841 ttcaccaagt tcagctccca ggtgtctaag ccacggcggc tcatggcctc caggagatac
      901 tactttgaac tgcttcacaa gcaagatgac aagggttcag accatgtgga agtgggttgg
      961 cgagctttcc tgccgggtct gaagttcgag atcattggtt ctgctcacat ctccctgtac
     1021 acagatgagt catctctgaa gatggaccat gtggcccatg tgcctcagtc tccagctagc
     1081 catgtaggag gatacccagc acaggaggag cccagcgccg acatgctgca tccagacccc
     1141 agggacacct tcttcctcac tccgcggatg gaacctttga gcctggagaa tgtgctagaa
     1201 ccctgtgcct atgcacctac ctatgtcctc aaggatttcc ccatagccag ataccaagga
     1261 ctgcagttcg tgtacctgtc cttcatctat cccaatgacc atacccgtct cactcacatg
     1321 gagacagaga acaagtgctt ctaccgtgag tccccgcttt acctggaaag gttcgggttc
     1381 tataaataca tgaaaatgga caaggaggaa ggagaggaag atgaggaaga agaagttcag
     1441 cgtagagcct tcctcttcct caacccagat gacttcctgg atgatgaaga tgagcaggaa
     1501 ctgttagaca gcctggagcc cactgatgca tccctacagc agagccacag gacccccacc
     1561 ccagcagcct cccctgaaac tacagccagc cctaccccac ctacgactag tcctctggat
     1621 gagcagaccc tcagacattc ccgggcactg aattgggccc cacgccccct gcccctcttc
     1681 ttggggcgag ccccgcctcc ccgaacctcg gagaagtcgt cttcaaaagt gtatgtgacc
     1741 agggtacgac ctggacagcg ggcttcccca agggcattga gagactcgcc ctggccaccc
     1801 ttccctggtg tcttcctgcg ccccaagcct ctgcccagag tacagctacg ggtgcccccg
     1861 catccacctc ggacccaggg ctataggacc agtagcccca aggtcacaga actaaggccc
     1921 ccagtcaggg cacagaccaa ccagggaggc caggagggcc agttgcacgg acaaggactc
     1981 atggtgccca cggtggactt gaactcctca gtggaaacac agtctgtgac ctccttcctg
     2041 agcttatctc aggtatctag accacagctg cctggagagg gtgaagaagg ggaggacggg
     2101 gcccctggtg atgaggccac atcagaagac agtgaggaag aggaggagca ggctgctggg
     2161 cggccgctgg gccgctggcg tgaggatgct attgactggc agcgcacatt cagcgtgggc
     2221 gccatggact tcgagctgct gcgctccgac tggaacgacc tgcgctgtaa cgtgtccggg
     2281 aacctgcagc ttcctgagac cgaagcagtg gacgtggtgg ctcagtacat ggagcggctt
     2341 aatgcacggc atggcgggcg cttctcgctt ctacgcatcg tgaacgtgga aaagcgccgc
     2401 gactccgcac gcggaagccg cttcctcctg gaactggaat tgcaagagcg cggaggcagc
     2461 cgccagcgcc tttcagaata tgtcttcctg cgattgccgg gagcccgcgt tggggacgaa
     2521 gatggagaca gtcccgagcc ccctcctgcc gcctccagcc acccagacag tcgcccagag
     2581 ctctgccggc ccttgcacct ggcctggcgt caggatgtca tggttcattt cattgtacca
     2641 gtgaagaatc aggcgcgctg ggtagtgcag ttcctggcag atatgactgc gctgcatgtg
     2701 cagacggggg actcctactt caacatcatc ttggtggact ttgagagcga ggacatggat
     2761 gtggagcggg ccctgcgtgc ggctcagcta cctcggtacc agtacttgag acgaactgga
     2821 aacttcgagc gctctgcagg cctgcaaact ggagttgatg cagtggagga ccccagcagc
     2881 atcgttttcc tctgtgacct gcacatccac ttcccgccta acatcctgga cagcatccgc
     2941 aagcattgtg tggagggcaa gctggccttc gcccctgtgg tcatgcgtct gggctgtggg
     3001 agctcaccgt gggacccaca tggttactgg gaggtgaatg gatttggtct ctttggaatc
     3061 tacaaatcag actttgaccg agtgggaggc atgaacactg aggagttccg tgaccagtgg
     3121 ggaggcgagg actgggaact tctggacagg gtcctgcagg cagggctgga ggtggagagg
     3181 cttcgacttc gacatttcta ccaccactat cactcaaagc gaggcatgtg ggccacacgc
     3241 agccgcaagg gtgcccgcgc acatcgatcc tgaagaccca gctgccctct gtgccacggg
     3301 gccttggcgc agcagggttg aagctgcatc ctgaccttga ttggggccac ctgtgctggc
     3361 ccctaaatgc ctcctctgtg actccagata ggcagcgttc acggcagggc aggcaccttg
     3421 atccccacac tccctgatga tttctgtgaa attttctgta gcaatgacat tgttttcaga
     3481 atttacaaga gttctgtctg ttctgttttt tattcagaat gaaatgaaat atttttttta
     3541 gttctg
//
