LOCUS       NM_001191976            6425 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus beta-1,4-N-acetyl-galactosaminyl transferase 3
            (B4galnt3), mRNA.
ACCESSION   NM_001191976 XM_575655
VERSION     NM_001191976.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6425)
  AUTHORS   Sato T, Gotoh M, Kiyohara K, Kameyama A, Kubota T, Kikuchi N,
            Ishizuka Y, Iwasaki H, Togayachi A, Kudo T, Ohkura T, Nakanishi H
            and Narimatsu H.
  TITLE     Molecular cloning and characterization of a novel human beta
            1,4-N-acetylgalactosaminyltransferase, beta 4GalNAc-T3, responsible
            for the synthesis of N,N'-diacetyllactosediamine, galNAc beta
            1-4GlcNAc
  JOURNAL   J Biol Chem 278 (48), 47534-47544 (2003)
   PUBMED   12966086
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000149.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001191976.3.
            
            On Oct 14, 2022 this sequence version replaced NM_001191976.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132265, SAMD00132267
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            inferred exon combination        :: based on alignments, homology
            RefSeq Select criteria           :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-494               JACYVU010000149.1  5831371-5831864     c
            495-598             JACYVU010000149.1  5763956-5764059     c
            599-676             JACYVU010000149.1  5762809-5762886     c
            677-772             JACYVU010000149.1  5754973-5755068     c
            773-863             JACYVU010000149.1  5754490-5754580     c
            864-964             JACYVU010000149.1  5753995-5754095     c
            965-1032            JACYVU010000149.1  5753533-5753600     c
            1033-1111           JACYVU010000149.1  5752178-5752256     c
            1112-1178           JACYVU010000149.1  5751967-5752033     c
            1179-1322           JACYVU010000149.1  5750909-5751052     c
            1323-1432           JACYVU010000149.1  5749799-5749908     c
            1433-1533           JACYVU010000149.1  5748862-5748962     c
            1534-1595           JACYVU010000149.1  5748569-5748630     c
            1596-2361           JACYVU010000149.1  5746802-5747567     c
            2362-2678           JACYVU010000149.1  5741669-5741985     c
            2679-2832           JACYVU010000149.1  5740506-5740659     c
            2833-2905           JACYVU010000149.1  5740216-5740288     c
            2906-3059           JACYVU010000149.1  5738530-5738683     c
            3060-3186           JACYVU010000149.1  5737893-5738019     c
            3187-6425           JACYVU010000149.1  5731864-5735102     c
FEATURES             Location/Qualifiers
     source          1..6425
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..6425
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /note="beta-1,4-N-acetyl-galactosaminyl transferase 3"
                     /db_xref="GeneID:500306"
                     /db_xref="RGD:1561056"
     exon            1..494
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     CDS             326..3295
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /EC_number="2.4.1.244"
                     /note="N-acetyl-beta-glucosaminyl-glycoprotein
                     4-beta-N-acetylgalactosaminyltransferase 2"
                     /codon_start=1
                     /product="beta-1,4-N-acetylgalactosaminyltransferase 3"
                     /protein_id="NP_001178905.1"
                     /db_xref="GeneID:500306"
                     /db_xref="RGD:1561056"
                     /translation="MGSPRVALLMLLLRPIKLLRRRFRLLLLLAVVSVGLWTLYLELV
                     ASAQVGGNPLNHRYSSWRELAKALASRNIPAVDPNLQFYRPQQPSLKDQGIARSRSRN
                     SSYLKWNKPVPWLSEFQGHANLHVFEDWCGSSIQQLRSNLHFPLYPHIRTTLRKLAVS
                     PKWTNYGLRIFGYLHPFTDGKIQFAIAADDNAEFWLSRDDQVSGLQLLASVGKTGKEW
                     TAPGEFGKFQSQISKPVSLSASLRYYFEVLHKQNDEGTDHVEVAWRRNDPGAMFTIID
                     SPYLSLFTNETILRMDEVGHIPQTAASHVGSPNSPPQDEQPPADMLRPDPRDTLYRVP
                     LIPKSHLRHVLPDCPYKPSYLVDGLPLQRYQGLRFVHLSFVYPNDYTRLSHMETHNKC
                     FYQESAYDQDRSGFQEYIKMDTPGKQGPEQPAGLEDGLLEESQYEEAPGEIPTSRDRN
                     AGTQGRKQKTTSAPGLGVTDYHLRKLLARTQNGPLAPLSKQNSTATFPSRTKDNPVRQ
                     PEKRTGKTSPMPSRDLGDKVARRNLPVIQRARPTGDGPGKTLEQSQWLNQVESFIAEQ
                     RRGDRMEPPTPSRGWHAQEDVVIAADQEGEVEEEEEGEDEEEDMNEVFEYVPVFDPVV
                     NWGQTFSAQNLDFQALRTDWIDLNCNTSGNLLLPEQEALEVTRVFLRKLSQRTRGRYQ
                     LQRIVNVEKRQDRLRGGRYLLELELLEGQRLVRLSEYVSTRGWRGGDPAGREDTEARN
                     LQGLVWSPRSHHRQVSNAQDPEPKLCWPQGFSWNHRAVVHFIVPVKNQARWVQQFIRD
                     MESLSQVTGDSRFSVIVTDYSSEDMNVEMALKRSRLRSYQYLKLNGNFERSAGLQAGI
                     DLVKDPHSIIFLCDLHIHFPAGIIDTIRKHCVEGKMAFAPMVMRLHCGATPQWPEGYW
                     EVNGFGLLGIYKSDLDKIGGMNTKEFRDRWGGEDWELLDRILQAGLEVERLSLRNFFH
                     HFHSKRGMWNRRQMKMP"
     exon            495..598
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            599..676
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            677..772
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            773..863
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            864..964
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1032
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1111
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1178
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1322
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1432
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            1433..1533
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            1534..1595
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            1596..2361
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            2362..2678
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            2679..2832
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            2833..2905
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            2906..3059
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            3060..3186
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
     exon            3187..6425
                     /gene="B4galnt3"
                     /gene_synonym="RGD1561056"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaagcgcgg gggccggcgg gcaactagga gagcctcctg ggcagagtgc aggagtgaga
       61 aagaagagag ggagggaggt ggcgggcctg cgacgaggag aggcgtggag cggacacttg
      121 gggaggagga gctcgactcc gcggccggag aaagacctgc gaggcacccg cgcagcggag
      181 gatcacctct gcgcgctgag catgagtggg cggtcggctg gagtgcgacc cggggagact
      241 ggctgtgcgc cgcgctgaac ggcggagccc ggccggggcg acgggcgggt agcccatgct
      301 agggcggccc gcagggcata gcgccatggg gagcccccgc gtggcgttgc tgatgctgct
      361 cttgcgcccg atcaagctgc taaggaggcg cttccggctg ctgctgctgc tggccgtggt
      421 ctcggtggga ctctggactc tgtatctgga gctggtagcg tcggcccagg tcggcgggaa
      481 ccccctgaac cacaggtaca gcagctggcg agaactggcc aaggccctcg ccagcaggaa
      541 catccctgcc gtcgatccga atctccaatt ctaccgtccc cagcagccga gcctcaagga
      601 tcaaggaatc gcccgaagta gaagtaggaa cagcagctac ttgaagtgga acaagcccgt
      661 cccctggctc tcagagttcc agggccacgc caacctgcac gtgtttgaag actggtgtgg
      721 cagctccatc caacagctca ggagcaacct gcacttcccg ctgtaccccc atatccgcac
      781 aaccctgagg aagctggctg tgtcccccaa gtggaccaac tatggcctcc gcatatttgg
      841 ctacctacac ccttttaccg atgggaaaat ccagtttgcc atcgctgctg acgacaacgc
      901 tgaattctgg ctgagtcgtg atgaccaggt ctcgggcctt cagctgctgg ccagtgtggg
      961 caagacagga aaggaatgga cagcccctgg agagtttggg aaatttcaga gtcaaatttc
     1021 caagccagtg agtttatcag cctctctcag gtactacttt gaggtgcttc acaagcagaa
     1081 cgatgagggc actgaccacg tggaggtcgc atggagacgg aatgaccctg gagccatgtt
     1141 caccatcatt gactccccct acttatctct ctttaccaat gaaaccatct taaggatgga
     1201 tgaggtaggc catatcccgc agacagcagc cagccacgtg ggctccccca actctcctcc
     1261 ccaggatgag cagccccctg ctgacatgct tcgacctgac cctcgggaca ccctctatcg
     1321 agtgcctctg atccccaagt cccatctgcg tcatgttctg cctgattgtc cctacaaacc
     1381 cagctacctg gtggatgggc tcccgcttca gcgctaccag ggcctccgct ttgttcacct
     1441 gtcctttgtt tatcccaatg actacacccg cctgagccac atggagaccc ataataaatg
     1501 cttctaccaa gaaagtgcct atgatcagga caggtccggc ttccaggagt acatcaaaat
     1561 ggacacgcca ggcaagcagg gcccggagca gccagcaggt ttggaggacg gccttctaga
     1621 agaatcccaa tacgaagaag caccagggga aatccccacc tctcgagacc ggaatgctgg
     1681 gacacaaggg agaaaacaaa agacgacttc cgccccaggg ctgggtgtca ctgactacca
     1741 cctgcggaag ctcctggctc gcacacagaa tggtccattg gcaccccttt ccaaacagaa
     1801 ctctacagcc acctttccaa gcaggacaaa ggacaaccca gtccggcagc cagagaaaag
     1861 gacagggaaa actagcccta tgcccagtcg agatttaggt gacaaggtgg cccggaggaa
     1921 cctgcctgtc atccagagag ccagacccac tggtgacggc cctgggaaga ctcttgagca
     1981 gtcccagtgg ctgaatcaag tggaatcctt catagctgag cagagacggg gagacaggat
     2041 ggagcctccg acccccagca ggggctggca tgcgcaggag gacgtggtca tagcagcgga
     2101 ccaggaagga gaagtggagg aggaggagga aggggaagac gaagaagaag atatgaatga
     2161 ggtgttcgaa tatgtgcctg tgtttgaccc agtagtgaac tggggccaga ccttcagcgc
     2221 tcagaacctc gacttccaag ccctgaggac cgactggatc gacctgaact gtaacacatc
     2281 gggcaacctg ctgcttccgg agcaggaggc cctggaggtc acacgggtct tcctgagaaa
     2341 gctcagccag aggacccggg ggagatacca gctgcagcgc attgtgaatg tggagaaacg
     2401 ccaggaccgg ctgcgtggag ggcgctacct cctggagctt gaactgctgg aaggccaacg
     2461 cctggtgagg ctctcagagt atgtgtccac tcgaggctgg cggggaggtg accctgctgg
     2521 ccgggaggac acagaagctc ggaacctgca gggcctggtc tggagcccac gcagccatca
     2581 tagacaagtc tcaaatgctc aggatccaga gcccaagcta tgttggcccc aaggtttctc
     2641 ctggaaccat cgagctgtgg tccactttat tgtgcctgta aagaaccagg ctcgctgggt
     2701 gcagcagttc atcagagaca tggagagcct gtcccaagtc actggagact cacgtttcag
     2761 cgtcattgtc acagactata gcagtgagga catgaatgtg gagatggctc tgaagaggtc
     2821 cagactgcgg agctaccagt acctgaaact gaatggaaac tttgagcgct ctgctggact
     2881 acaggctggc atagacctgg tgaaggatcc gcacagcatc atctttctct gtgacctgca
     2941 catccacttc ccagcaggaa tcattgatac catccggaag cactgtgtgg agggcaagat
     3001 ggcctttgcc cccatggtga tgcggctgca ctgtggggcc accccacagt ggcctgaggg
     3061 ctactgggaa gtaaacggat ttggcctcct cggcatctac aagtcagacc tggacaagat
     3121 cgggggcatg aacaccaagg agttcagaga ccgctgggga ggggaagact gggagctgct
     3181 ggacaggatt ctccaagcgg gcctggaagt ggagcggctc tccctcagga acttcttcca
     3241 tcacttccat tccaagcgag gcatgtggaa ccgtcgtcaa atgaagatgc cgtgacctgg
     3301 gggccagcgc ttatagctcc ttgacttgcc gttgacccca gtgccctgtt cgctgctgag
     3361 gagggactct gaggaactga agcctcagcc ctaattgctc tctctagcgg gagctgtctc
     3421 ttcgtgcagg gacgagggag cgccgaggct cctctgaggc tcactgagtt gacagttgac
     3481 agacggaaag gatgggcagt gagggcagga ggacgacgcc tgcttgggta gacttcaaag
     3541 gtgcattccc acagcccggc actcctcaca gggagtggtg gctgtgaacc gggaacttaa
     3601 atgggacaga ttttatttgg ggtggagggt gggggaaagg tgggtaaatt ttttttaaca
     3661 gagaatgaag acttctatct agacccagca tcgtctgggg tgaaactgtg cattgcagac
     3721 ctcaagccta ccctgaggtg ctggtcccat gcagagtact tccagctcca ggcccagcct
     3781 gtgccttcta aacctgcaca tctctcctgg tgtctaccga atggctggcc ttaacccaat
     3841 cgggccatta acccgactcg gacagacagc gagctcccta gactggaaac caacactgat
     3901 ggcatcttcc tactgcgctg gggtgtcagg cgggaatggg tgggcagtgg gcccattctc
     3961 ctgagtgtct gacacgagct gtgtaggaca gcaaggtcaa gcaggtagag aagcgtccct
     4021 tctccttggc tctcccgcca ggtaaggcct ggagagaatg ggaaggtgtc acctaagctg
     4081 acatgagtag cctctcaatt acttaaggga gacttagggg tggactcaag cagtagagag
     4141 agtcaaaaag gaaaggacat ctgtactgca agcctcgtgc actcctgcag agggagccca
     4201 acctccctcc ctccctccct gaggagatga ggtaaaacct ggccctcagg aaaagggcag
     4261 ggtcagagat ggggaggaag aactggaaaa tggctaagtt tcaaggagag cagcctgtac
     4321 cctctgtccc tctgctgtca catacttacc tgtgctgata accccagtgc tctctggctg
     4381 gggacttgct gctgctgctg ctgctgctgc tgctgctgct gctgctgctg ctgctgctgc
     4441 tgctgctgct gctgctgctg ctgcttcacc ggtggtgcat tggatgctgg gtattgaact
     4501 cagtctgtga aggggggttt gggggaaggg ggttgggaca ccacctttct gctgtgagaa
     4561 atggcttgtg ggtatgcagc agggccactc cagaacctga ctactgtgct gtgaattaag
     4621 agtgcagcac ttggagctgc aggacccacg tggcaggctc tgagtgccag gaacagagct
     4681 tggcacatcc aaggtggggc cctctgggaa gccactgggc ctttctctta agctatcaga
     4741 agggcagggt ggttctgttt atgggctgtg gctttttctc acccctgctc aggccctctg
     4801 ccctttagaa aaggcacagg aagtaggcta gggctgcatt tgaacagctg gagtgccagg
     4861 cttctcccta aagacatgaa ctttgggcct tgtgctagaa gccacagccg atggcagcag
     4921 ccctcccatt ctgttcctga ggactaggat ctccctgggc ctccccagcc ctgctcaccc
     4981 cctcccaggt ccagtgcctt gcatttgatg tctgttacct cctcaccatc tgccttaagg
     5041 gaaaggaaag ggccgtgggt ggggagaggg aggagggtat taaagtcagc atcttagaaa
     5101 acaaatggct gttttcttct tgcccaattg aggtaggaaa gggttaggtg ggagagccag
     5161 gggtgtccct aagccatttg tgtccctcag ctgtctgatc ggtgacaggc taaggaccat
     5221 cccttgcctt ctgccttgac tcctggtttg ttgcttgcca gcagaagaga caagctttct
     5281 ctgctgccct tgggaaggac acagcagtgt cctgaccatg tcaatgagtc tcagaagacc
     5341 aggtttagtt ctgaggttgt gatctcagct agaaaactcc cccaagacac ccccactgag
     5401 gaaggtgagc tagaaaagtg cagctgtaac cccaacactt ggaaagctaa caggaagatc
     5461 aggagagcaa ggctagccta ggcgacttgg caagaaactg tcaaagtgaa tagataaaca
     5521 ttagaaaatc tttcctgtgt gaattgaaga agccctacta aggcttcaga agtgtgggtt
     5581 ggccttccca gttatgtttg aactaggcaa aatttttcaa gattttattt tatgtgtgtg
     5641 ggtgttgtgc ctgcatgcct ctgtactacc tgtgtgcctg gtgtccaaag aggccagaag
     5701 agggcgttag atttcctgga actggagttc atgtagttca ggtggttgta ggtcaccagg
     5761 taggtgctgg aaattgaacc cagaatttct ggcagagtag ccggtgctct taaccgctca
     5821 gccgcctctc tactccttcc gcgcccctcc ccttttctta aatgttttta gctgggttta
     5881 gtggtgtatg cctttaatct cagcactcca ggggcagagg caggcaggtt tgaacccagc
     5941 ctgatctaca tagtgaaatc caggccaacc agaattgcag ggtgtgaccc tgtctcaaaa
     6001 aaaaaaaaaa aaaaaaaaaa aacccaaaaa cttaaatgta ttcatttaga gtgtgtgtgg
     6061 tatatgcttg ccacagtgca cactggaggt cagagggcag ctttcagtga ttggttcttg
     6121 tccctcctca ccatgtgggg tgcctcaggc ttggccacaa gggcctttgc tcactaacct
     6181 tcccaccagc agaaaatctg tatttttgtt gttgttaaga tttatgtttt tcggagctgg
     6241 aaagatggct cagtggccaa gatcaacaac tcttccagag aacccaggct cagtcctcag
     6301 cacccacatg gtggctcaca attgtctgta actccagttc taggagacct gacaccttta
     6361 cacagacata catgcaagca aaacaccaat gcacataaaa tgaaaataaa ttatttttaa
     6421 agaga
//
