LOCUS       XM_039087862            3670 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus beta-1,4-N-acetyl-galactosaminyl
            transferase 2 (B4galnt2), mRNA.
ACCESSION   XM_039087862
VERSION     XM_039087862.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087862.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3670
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3670
                     /gene="B4galnt2"
                     /note="beta-1,4-N-acetyl-galactosaminyl transferase 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 ESTs, 9 Proteins, and 81% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:688155"
                     /db_xref="RGD:1592405"
     CDS             1..1584
                     /gene="B4galnt2"
                     /codon_start=1
                     /product="beta-1,4 N-acetylgalactosaminyltransferase 2"
                     /protein_id="XP_038943790.1"
                     /db_xref="GeneID:688155"
                     /db_xref="RGD:1592405"
                     /translation="MKSSGLHTLEIKNSNAFCFFPVSFASSRFPWLLKTLVMILGLAT
                     VVFMFRSLALTAEFGTFKPAFPKPGPVDPVLKLLSEEHLRTLFTYSDIWLFPKNQCDC
                     ESGKQQMKYKYQNAYNQKDLPAVNARRQAEFEHFQRREGLPRPPPLLASPNLPFGYPV
                     HGVEVMPLHTILIPGLQYEGPDAPVYEVTLKASLGTLNTLADVSDNEVQGRGQRQLSI
                     STRHRKVLNFILQHVTYTSTVYHLHKVDIVSMESKSSVAKFPVTIKHQTVPKLYDPGP
                     ERKLRNLVTIATKTFLRPHKFKILLQSIRKYYPDLTVIVTDDSKEPLEIKDDYVEYYP
                     MPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFSNKTKIEVLVDVLEKTELDVVGGSVQ
                     GNTFQFRLLLERSENGDCLHQRWGSFQALDGFPGCTLASGVTNFFLAHTEQLRRVGFD
                     PALQRVAHREFFIDGLGSLLVGSCPGVTVDHQTRTPSKDPKLAALEMSYAKYRTNTNS
                     QVQFKLALHYFKNHLYCAT"
ORIGIN      
        1 atgaagtcct caggtttgca cactctcgag atcaaaaatt ctaatgcctt ttgctttttc
       61 cctgtgtctt ttgccagctc caggttccca tggctcctca agacgttagt catgatccta
      121 ggacttgcca ctgttgtgtt tatgttcaga agtttggccc ttacagcaga gtttggcacc
      181 ttcaagccag cgttcccaaa gcctgggccg gttgacccag tgctgaaact tctatccgag
      241 gagcacctga ggacactctt tacctacagt gacatctggc tcttccccaa aaatcaatgc
      301 gactgtgagt ctggcaaaca gcaaatgaaa tacaagtatc agaacgccta taaccagaag
      361 gaccttccgg ctgtgaacgc cagaagacag gcagaatttg agcacttcca gaggagagaa
      421 gggctgcctc gcccaccacc tctgctggct tcacccaatc tccccttcgg atacccggtc
      481 catggtgtgg aggtgatgcc cctgcacacg attctcatcc caggcctcca atatgaaggg
      541 ccagatgccc cagtctatga ggtcaccttg aaagcttctc tggggacact gaacaccctt
      601 gctgatgtct cagacaatga ggtgcagggc agaggccaga ggcagctgag catttccacc
      661 agacaccgga aggtcctgaa cttcatcctc cagcatgtga catacaccag caccgtgtac
      721 catctccaca aggtggacat agtgagtatg gaatccaagt catcagtggc caagtttcca
      781 gtgactatca aacatcagac tgtacccaag ttgtatgacc ctggacctga gaggaagctc
      841 agaaacctgg tgaccatcgc cacgaagact tttctccgtc cccacaagtt taagatcctg
      901 cttcaaagta ttcgaaagta ttacccagac ttaaccgtga ttgtgactga tgacagcaag
      961 gagcccctgg aaattaaaga tgactacgtg gagtattacc ccatgccctt tgggaagggc
     1021 tggtttgctg gtaggaacct ggccatctca caggtgacta ctaaatacgt cctctgggtg
     1081 gacgatgact ttctcttcag caacaagacc aagattgagg tactggtgga tgtcctggag
     1141 aaaactgaac tggatgtggt gggcggcagc gtgcagggaa acactttcca gttcaggctg
     1201 ctgttggaac ggagcgagaa tggggactgt cttcaccaga ggtggggatc attccaggcc
     1261 ctcgatggct tccccggatg cacgctggcc agtggcgtca cgaacttctt cttggctcac
     1321 acagaacagc tccgaagagt cggttttgat ccggccctgc aaagagttgc tcaccgagaa
     1381 ttttttattg atgggctggg gagcctgttg gtgggctcgt gtccgggggt gactgtagac
     1441 caccaaacac gaacaccatc gaaggatcca aagctggctg ccttggagat gtcttacgcc
     1501 aaataccgga ccaacaccaa ttctcaggtc cagttcaagt tagcgctcca ctacttcaag
     1561 aaccatctct actgcgccac ttaaaaggca aagagccgga agtgcaatac gcagattagc
     1621 tgtggacaac aaaaaaatag taggactgga cattaggtgt gctaaaagca gactcctaac
     1681 aaggggaaca gagagcgaag tagctggaag ttggagccag tgtagggacc ctgaagtcgg
     1741 ctcaagatgc cccaaagact aagttctcag aacagagatt ttctgccccc gaggggtaaa
     1801 gggcacagaa taagagacaa agacaggggc tggccagtgg tggtttacac ctttaattcc
     1861 agcactccgg aggcagaaac aggcggatct cagtgagttt gagaccagtc tggtcttcag
     1921 agtgagttcc aggacagcta gggctacata gagaaaccct gtctggaaaa acaaacaaac
     1981 aaaaagttaa tttaaaataa tgttattcaa agccagatgt tatggttggt gtagtgttgt
     2041 aaccccagag ctgaagtagc agattaagaa gagttcaagg ccagcatgag ctatgtgaac
     2101 gcctatcttt aaataggggg gctggaaaga gttcagtgct taagagtgat tagtactcgt
     2161 acctagattg gttcccagga cccacatgat cagtcccagc tgtctgtaac tctcttcata
     2221 attacagttt ctggaagcgt cttcttacct ccaaagctcc tgcgtacaaa tggtacatac
     2281 atacactcag gcacacaata aatttaaaat aaatgaagga acagtgaatg gctaaacatt
     2341 aaccagctaa ttctgctttt attgtgttaa gactgcctgg cctagaactc tgtgtagaac
     2401 agtctgacct caaactcata gcgatcttcc tgtctctacc tcacagtgct gagatatgag
     2461 gtctgaacca cggtttctgg cttgattttt ttttcttaag aattatttat tttaatatat
     2521 atgagtacat tgtagctgtc ttcagacaca ccagaagagg gcatcggatc ccttgtgata
     2581 gttgtgagcc accatgtggt tgctgggaat tgaactcagg acttctggaa acacagtgct
     2641 cttaacctct gagccatctc tccagccttc tggcttgatt tttaaacttt gaaactttga
     2701 ttttaaatat ggtacttgtt cattgtaact tttatatttt aatttaatgg gttattaaac
     2761 tagatgttaa aatgatagaa tattctagaa taaaaatgac ttttaaaatc atgaaaagta
     2821 acactaattt taaaacttac atttactcca atttactctt tatgcaaatt tcaacactct
     2881 gaacacactt tttttttttt acttccccag gtagttattg ttggactata gaaagtcaag
     2941 caccagcttg gagtgggtac ggagacaggg aatgacacac caactgggtg tggtgtgggc
     3001 ttttaattcc agtcttgaat tcagagatcc tccagccagg gctgtacagt gagctcagag
     3061 gaaatggctc agaaggtgaa gtgcttacta cccaagcatg aaaacttgag ttcagatccc
     3121 cagaatacaa agtaaggtgt ggctgcaagt ctgtaaccct gggcattctc atagcaaatg
     3181 taacatcctc cagtttgaca gggttgtcat tagcatgctc aagtggtctt ttctctactt
     3241 caagatctag agtcatctct ccaggaaaaa gaaatagtcg agatgtggct ttgagagaga
     3301 gagtttccta tgatccagta atacttcttt cccaggaaca caggatgttc caaaaggatg
     3361 tgaaatagtc cattcaattc aaagggttca ggaagtccct gaaaaccacc agacacacta
     3421 ggccctctcc ttcctaagta tattagctgt aaggactgct gagagacact ctcagacgag
     3481 ttgagctgcc tgaaacatta tccaacctgt tgagctgtct gcaagttgta cagagggttc
     3541 caagtttaca gcttttgtga tgttgtgagc tctcctgttg cagctgtctt ttgagtcatt
     3601 cttgctcctg tgataatccc tcacccatac ttctgcatgt aaccccaata aaactcatca
     3661 gtctgctaca
//
