LOCUS       NM_001400948            2377 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus UDP-GlcNAc:betaGal
            beta-1,3-N-acetylglucosaminyltransferase 9 (B3gnt9), mRNA.
ACCESSION   NM_001400948 XM_008772556
VERSION     NM_001400948.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 31, 2022 this sequence version replaced XM_008772556.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.199164.1,
                                           SRR26360176.1096658.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676809 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               JAXUCZ010000019.1  50042071-50042206   c
            137-2377            JAXUCZ010000019.1  50039649-50041889   c
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..2377
                     /gene="B3gnt9"
                     /gene_synonym="RGD1310170"
                     /note="UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 9"
                     /db_xref="GeneID:291958"
                     /db_xref="RGD:1310170"
     exon            1..136
                     /gene="B3gnt9"
                     /gene_synonym="RGD1310170"
                     /inference="alignment:Splign:2.1.0"
     exon            137..2377
                     /gene="B3gnt9"
                     /gene_synonym="RGD1310170"
                     /inference="alignment:Splign:2.1.0"
     CDS             218..1414
                     /gene="B3gnt9"
                     /gene_synonym="RGD1310170"
                     /codon_start=1
                     /product="UDP-GlcNAc:betaGal
                     beta-1,3-N-acetylglucosaminyltransferase 9"
                     /protein_id="NP_001387877.1"
                     /db_xref="GeneID:291958"
                     /db_xref="RGD:1310170"
                     /translation="MRRRPRLCRDAWLTLLLSAALGLLLYAQRDGVSPTTRAPPARGR
                     QLPRPTPGRRALELPNTAHAAPPAYEGETPVPPTPTDPFDFRRYLRAKDQRRFPLLIN
                     QPRKCHSDGASGGSLDLLIAVKSVAADFERREAVRQTWGAEGRVQGALVRRVFLLGVP
                     KGAGSGGAGTRTHWRALLEAESRAYADILLWAFEDTFFNLTLKEIHFLSWASAFCPDV
                     HFVFKGDADVFVHVRNLLQFLEPRDPAQDLLAGDVIVQARPIRARASKYFIPQAVYGL
                     PVYPAYAGGGGFVLSGATLHRLAHACTQVELFPIDDVFLGMCLQRLRLTPEPHPAFRT
                     FGISQPSAAPHLRTFDPCFYRELVVVHGLSAADIWLMWRLLHGPQGPVCAHPQPVATG
                     PFQWNS"
ORIGIN      
        1 gtggcacagc ctcagtcccc ttcctgccaa cgctgcattt ggctcaagcc cgggtcatgg
       61 ctgcccttgg gaccctgagc tgacagtcgg agtgtcctgc gtttcaggga ctgtgactcc
      121 acccccgcgg tcaagcgctg ctgcggtggg gcaggcccag aggtcgacag agtggatgaa
      181 ggaaggatag aggaccccgg gaagggcggg gctggacatg aggaggaggc cgcgcctttg
      241 ccgggatgcg tggcttacgc tgttgctcag cgccgccctc ggactcctgc tctatgcgca
      301 gcgcgacggg gtatccccca cgaccagagc accaccagcg cgaggacgac agctcccgcg
      361 gcctactcct ggtcgccgag cactggagct ccccaacacc gcccacgcgg ccccgccagc
      421 ctacgaaggg gagaccccgg tgccacccac acctacggac ccctttgact tccgcaggta
      481 tctgcgcgcc aaggaccaac ggcgctttcc gctactaatt aaccagccgc gcaaatgcca
      541 cagcgacggc gcatctggcg gctcgctcga cttgctcatc gcagtcaagt ctgtggccgc
      601 cgacttcgag cggcgggaag ccgttcgcca aacttggggc gccgagggtc gcgtgcaggg
      661 ggcactcgtg cgccgagtgt tcttattagg cgtgcctaag ggggcgggct ccggcggggc
      721 aggcacgcgg acgcactggc gcgccctact ggaagctgag agccgagctt atgcagacat
      781 cctgctctgg gctttcgaag acaccttttt caatctaacg ctcaaggaga ttcactttct
      841 atcttgggcc tcagcattct gtccggatgt acactttgtt tttaagggcg atgcagatgt
      901 gttcgtgcac gtgaggaacc tgctgcagtt tctggagccg cgggatccag cccaggatct
      961 tcttgcaggt gatgtgattg tgcaggcaag gccgatccga gctagagcca gcaagtactt
     1021 cattccccag gctgtgtatg gactgccggt ttaccctgcc tacgcaggtg gtggtgggtt
     1081 tgttctttcg ggagccacac tccatcgcct agctcatgcc tgcacgcaag ttgagctctt
     1141 tcccatagat gatgtctttc tgggcatgtg tttgcagcgc ttgcggctca cacctgagcc
     1201 tcatccagca tttcgcacct ttggcatctc ccagccttcg gctgcaccac atcttcgaac
     1261 cttcgacccc tgtttctacc gagaactggt ggtagtgcac gggctatctg cagctgacat
     1321 ttggcttatg tggcgcttgc tgcatgggcc tcaggggcca gtctgtgcac acccacagcc
     1381 tgtggcaaca ggtcccttcc aatggaattc ctagctatct ctcacgatat caaacctctt
     1441 actcagctcc aggacagaac atgaaaaagt ccaaaggggt tttctatgag tttatggctt
     1501 ttcttcagat cactcaatgt gtagtagtgc taagccaacg agatagccag ggctaaggtg
     1561 gtggtctgtg gtttgaccag cacagaagct ggcacactta aatattagta gtcaagagca
     1621 ccattgtgtg tgccagctgg ggctcggctt ttcaggatgt ttaggatgat aaaaacacaa
     1681 gttgatctac ccatggccaa acctcacagc cattttcctt tagttattag cttccttcct
     1741 tctctacatt ggcttcccat tggctttatc ttatctgtcc cctttgaggt ctggtgatag
     1801 agctaactaa cccttcaggt ccaggtttgc ctgtagcatg agggatgggg ccatgatgtg
     1861 tgtcatgtga tccatcccct tcccagaaga aatcctaaga ttcctccact ataaaaattc
     1921 ccatattctt caaccacaac gtcgaggaaa ccgacagttc acattttagt acaaacaccc
     1981 cagcacatgg cagcatatgg caagctgtca gtgaggtgct aatttattgg atcgggatga
     2041 ggaagtctcc tctgttcaag aggatgggga cagtcctggc taccctgaca gtgagatatg
     2101 cagggtctct ggccagatga aggtccaaat gggaagacac ctgtcaatca gtcatgggag
     2161 tgccacacag gcctggctgt aggtacagga accatacaga cagctggggc aggtcccctg
     2221 cacattcatc atgaactata caagatgagg ctgtacatga gttaattaca aaagtcatta
     2281 tttacaaaaa tctgtacaca catttgaaaa actcacaaaa ttgtcatcta tgtatcacaa
     2341 gttgctagac caaaatatta aaaatgggat aaaatta
//
