LOCUS       NM_001105887            5101 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus Beta-1,3-galactosyltransferase 5 (B3galt5), mRNA.
ACCESSION   NM_001105887 XM_001053357 XM_221525
VERSION     NM_001105887.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5101)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   2  (bases 1 to 5101)
  AUTHORS   Hu,Y.H., Warnatz,H.J., Vanhecke,D., Wagner,F., Fiebitz,A.,
            Thamm,S., Kahlem,P., Lehrach,H., Yaspo,M.L. and Janitz,M.
  TITLE     Cell array-based intracellular localization screening reveals novel
            functional features of human chromosome 21 proteins
  JOURNAL   BMC Genomics 7, 155 (2006)
   PUBMED   16780588
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5101)
  AUTHORS   Hayashi,N., Nakamori,S., Okami,J., Nagano,H., Dono,K., Umeshita,K.,
            Sakon,M., Narimatsu,H. and Monden,M.
  TITLE     Association between expression levels of CA 19-9 and
            N-acetylglucosamine-beta;1,3-galactosyltransferase 5 gene in human
            pancreatic cancer tissue
  JOURNAL   Pathobiology 71 (1), 26-34 (2004)
   PUBMED   14555842
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001105887.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates and exon combination used
            for the transcript record were based on alignment to mouse
            transcript BY124193.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.45195.1,
                                           SRR26643298.66380.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-182               JAXUCZ010000011.1  49094195-49094376
            183-5101            JAXUCZ010000011.1  49095480-49100398
FEATURES             Location/Qualifiers
     source          1..5101
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..5101
                     /gene="B3galt5"
                     /note="Beta-1,3-galactosyltransferase 5"
                     /db_xref="GeneID:288161"
                     /db_xref="RGD:1306727"
     exon            1..182
                     /gene="B3galt5"
                     /inference="alignment:Splign:2.1.0"
     exon            183..5101
                     /gene="B3galt5"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..1109
                     /gene="B3galt5"
                     /note="UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase,
                     polypeptide 5"
                     /codon_start=1
                     /product="beta-1,3-galactosyltransferase 5"
                     /protein_id="NP_001099357.1"
                     /db_xref="GeneID:288161"
                     /db_xref="RGD:1306727"
                     /translation="MAHMKTRLLYASVLTMGALCLYFSMESFQELPFVFKKSHGKFLQ
                     LPEIDCKQKPPFLVLLVTSSHKQLAARMAIRKTWGRETSVQGQPVRTFFLLGSSDSTE
                     DMDATALESEQHRDIIQKDFKDAYFNLTLKTMMGMEWVYHFCPQTAYVMKTDSDMFVN
                     VGYLTELLLKKNKTTRFFTGYIKPHDFPIRQKFNKWFVSKFEYPWDRYPPFCSGTGYV
                     FSSDVAIQVYNVSESVPFIKLEDVFVGLCLAKLKIRPEELHTKQTFFPGGLRFSVCRF
                     QKIVACHFMKPQDLLTYWQALETSKDEDCPAV"
ORIGIN      
        1 ttattcccaa gagacacaac catcattttt ggtagacaaa ctgagtccaa aaggttgtct
       61 gagaaggtag ggtggaacct cgctcaccct ccccggctgc tcttcaaaag gaattcattt
      121 cctcttggct tctaccctgt ggcttagccc tctggacaga cctgagctct tacctggcaa
      181 agatggccca catgaagacg aggctccttt atgcttccgt tctcacgatg ggtgcgctct
      241 gcttgtactt cagcatggag tctttccaag aactcccctt tgtcttcaag aaaagtcacg
      301 ggaagttcct tcagcttccg gagatagact gcaagcagaa gccgcctttc ctggtgctgc
      361 tggtgacgtc atcccacaag cagctggcgg ctcgcatggc catccgcaag acgtggggta
      421 gagagacatc ggtgcagggc caacccgtga ggaccttctt ccttctgggg tcctcagaca
      481 gcacggagga catggacgct acagccctgg agagcgagca gcaccgtgac atcatccaga
      541 aggatttcaa ggacgcctat ttcaacttga ccctgaagac catgatgggt atggaatggg
      601 tctaccactt ttgccctcag accgcttatg tgatgaaaac ggactcagac atgtttgtga
      661 atgttggcta tctgaccgaa ctgctgctaa agaaaaacaa aacaaccagg ttcttcacag
      721 gctacataaa gccccacgac tttcccatca ggcagaagtt caacaagtgg tttgtcagta
      781 agttcgagta cccctgggac aggtacccac cgttttgctc tggtactggt tatgtctttt
      841 ccagcgacgt ggcgatccaa gtatacaatg tctcagagag cgttccattc atcaagctgg
      901 aggatgtgtt tgttgggctc tgcctggcca agctgaagat ccgacctgag gagctccaca
      961 ccaagcagac cttcttcccc ggtggtttac gcttctctgt gtgccgcttt cagaaaattg
     1021 tggcgtgcca ttttatgaag ccccaggacc tgctcactta ctggcaggca ctggagacct
     1081 cgaaagacga ggactgtcct gcggtctgag gggagcctgg tggcacctag gacaaacttc
     1141 tgataacctt tggtgatggt tttgggaaga cctgggatac tgggtcttgc tgggaactgt
     1201 ctcgggtaga gagaggatga ggagtcctca gtgccacagg agaaaggata aacacaaaag
     1261 ctgaggaacg acgtggcacc cagagcaata acagatcttg ttttgttcag gcctttgcag
     1321 tatgccctcg atgcttgaga catgccctta atccacccgt atcagggctc ggcatacaca
     1381 ggaagaagcc ctggatatga tcatccccat tttgtagttt aaaaaccagc agccagagtc
     1441 acttactcgt tcaaaactca cagcctgcag acagagcagg aatgagaatc aagtggtatc
     1501 gggattcagt tggtggtcgg tcctcaactg tgtgtcccat gccttgggag aaggtggtgg
     1561 tgggggaagc taagtagcat ccttcagtct cctgcccctc gcttcccaat cccttctact
     1621 ttttgaatgt taagactggg atgaaccagc tttctcaggc cttgcccatc gctcgaatga
     1681 tgtagctggg ttctgagtta acacagatta accacttggt acccaaagtg tcctcagtag
     1741 gattttagga gacacacatg cctgcagcct ctgtggctca catccatgtt agaaggaaac
     1801 tggttcatac gaccataaaa gtcaggctga gaagccactg ctgagtcttg cgatagagac
     1861 tgaccacact gctgacatcc cacgatgtct ccactgagcc gactctgcta tgcatgtact
     1921 ataagtgacc atttgtagcc ctggggtact tcagacctct aagttcaaac tcaagggcag
     1981 ccaggtatag ggatagtctg aatgagtatc tgggagcttt cctgggctct gggctgtgtc
     2041 taagctccag agatacagag catgggagta gccccagtct agggtctttc ctaactttgg
     2101 ctctttgccc tgaatttatc atgtagttag tcatagacat actgagtgtt gccatttgga
     2161 atttattcct gtttggtgtc ccgacccctg aaggttttca gagctgggta aaaacagggc
     2221 ttttgaccat tcagccacag tcaccagaca tgtaatcttg ctctgtattg caggaattat
     2281 tgctttccca cagcttttta cttttctaga ttttactatg agcttggagc aaaggcttca
     2341 tgtggctatg ttgttgtcaa tgttggaata tgctctcacc tgaactcagg aaaacttgac
     2401 agttgcagca aacactgtta gggtggagga agctggaagc tgcctagagg gcctcatttc
     2461 catacttgtt cctgtctctc ctacgaatct cttccacaac ttctagagga aattcttctg
     2521 tctgtggcat tcttcaaaat catgcagcat catgttctgg acccttattg agaatatatg
     2581 aaattctgaa ccatgtaaag agaaagggta tttgctcctg ggtgtgtact gtggattaca
     2641 tacaccgtca aaaccaaacc cagccacatc ttctttgaca gagggggaag ccaaagtttg
     2701 taatgtggtg gtgttgctgt ctaaagggtg ggagagctgg caccagcctc catgcaccgt
     2761 ccttttactc attcattagc catatttctc tttgtaccca cacatcatga atgaggttaa
     2821 ggctgggtct ccagacaaca gacccgagtg agcgggagtt cgagcatcca gtgctgagaa
     2881 gatggttggg tataggtttt tttagtatat gcacagcgcc ctggagccta agcaggtgtg
     2941 gtcacctgtg tccgcacttg ctgttttgtt gaagacaaca gcatccttca caagtggcca
     3001 ttcttcattc ttacaaccag attggttttc agcagaggca gctgaggtga cctcatgact
     3061 cacccagtgg ctgagacatg gcccagacac agtacttggc cttccccctt ggtgcaccat
     3121 caacatcctt tcccatgtgc ttgcttctct cagaagcttg gggctggtgc taccccagga
     3181 gttaccagta tcttactttg cctgcatgct gccacctctg tcctgggtgt tgtcttcagt
     3241 gttggtctac atggtttcct gtgacttggc cttggggggt atccatgcag ttctcacaac
     3301 ccccccccat ttagactagc cttatcacga ggtcatgcgc ggctaagtct ggtatattga
     3361 gttcagtcct tgaggtttat atggtagagg agagaattga tctttacaag cccacggtgg
     3421 cacatatatg cctgcacacg cgcatgcaaa aacataagta aaatgtaaac aaaaatattt
     3481 gccaaggctc cttcagacac tgacctctga ggctctttgc ttatttttat ttctgcattg
     3541 ctttccatga tgcaaatcct tgtgagggaa cactggcaca ggtgtgtgaa cactagggca
     3601 ggtgtgtgaa cactaggaca ggtgtgtgaa cactaggaca ggtgtgtgaa cactaggaca
     3661 ggtgtgtgaa cactggcaca ggtgtgtgaa cactaggaca ggtgtgtgaa cactaggaca
     3721 ggtgtgtgaa cactggcaca ggtgtgtgaa cactagggca ggtgtgtgaa cactaggaca
     3781 ggtgtgtgaa cactaggaca ggtgtgtgaa cactggcaca ggtgtgtgaa cactaggaca
     3841 ggtgtgtgaa cactggcaca ggtatagtag gaaaaaaacc ctctcaggat tatttgcaaa
     3901 atgctttcat ttggttggga attcaataga aattcgttgg gcttgcccca ggtctgtcta
     3961 gtttcccacc tgttaaccta actcccagga taccatcctc agagatggcc ttagattgtt
     4021 cctggaggtg aggggtgaaa ccacccaaga agggctgtgt gagcctgaca cgagcaagtt
     4081 acagtgaagc atattaacac aaggttttaa gtccactaaa aatagtattt tctaattacc
     4141 aggtgtaaca cttttaaata gaaatagaaa atggattttt gtggccaaat gtcatatacc
     4201 tgctttttct gtggtattgt tttgtggttt ttggtgctgg ggatggagcc ctaatgctta
     4261 tcagggcccc ccctactgtg cttctccagc cctggttgag ttgttttgca ttttactacc
     4321 tcctgcaggg gtctaggaga tcagaggctg gtacatgctg ttcagatgct atgctatggg
     4381 tagttttaac tgttaactct ggaagagaat tttaatgaga aattatttct tcattattag
     4441 ttgatgtagg aagactcagt ccactgtggg cgacactatt ccctaggcag ggtatactaa
     4501 atagtatgag aggagaaagc cagccgaggg ccagcaagga tccgtgttta cctctctgtc
     4561 tgtcaggcct gtggtgtgcc catctacttc atgttcctgc cttgacctcc ctgcaatagc
     4621 acaccacaac ctggacttgt gagccaaata aaccctctct cccccaagtt gactttgtca
     4681 tggtaacaga aatgaagcta aaccagatgc tcagggtgat gcgcacactg gattggaccc
     4741 ttctcacatt accctgccct ggatgtcatc cagtaccacc cctctgtccc acacagaggg
     4801 gagcccagaa gctgcttcag ggaactatca gaggaggaga gctgattcat ttcacattaa
     4861 aaaaaatgcc ttccatgact gcaaacgact catccgaagc tgtggacact ttgtggtcaa
     4921 atttgatttc ctaaaggata aaaaattcaa tgtctatgtc actggagttt ggaattgtca
     4981 cttgcctgta tgtggaggag gttctacagg cgctgatact gtgttttggg agcgggtgta
     5041 cgcgtttgtg atttgttaat gatatttatc tttaataaaa attaagttac aagcagcata
     5101 a
//
