LOCUS       NM_001144851            3936 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus beta-1,3-N-acetylgalactosaminyltransferase 2
            (B3galnt2), mRNA.
ACCESSION   NM_001144851
VERSION     NM_001144851.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3936)
  AUTHORS   Yoshida-Moriguchi,T., Willer,T., Anderson,M.E., Venzke,D.,
            Whyte,T., Muntoni,F., Lee,H., Nelson,S.F., Yu,L. and Campbell,K.P.
  TITLE     SGK196 is a glycosylation-specific O-mannose kinase required for
            dystroglycan function
  JOURNAL   Science 341 (6148), 896-899 (2013)
   PUBMED   23929950
REFERENCE   2  (bases 1 to 3936)
  AUTHORS   Stevens,E., Carss,K.J., Cirak,S., Foley,A.R., Torelli,S.,
            Willer,T., Tambunan,D.E., Yau,S., Brodd,L., Sewry,C.A., Feng,L.,
            Haliloglu,G., Orhan,D., Dobyns,W.B., Enns,G.M., Manning,M.,
            Krause,A., Salih,M.A., Walsh,C.A., Hurles,M., Campbell,K.P.,
            Manzini,M.C., Stemple,D., Lin,Y.Y. and Muntoni,F.
  CONSRTM   UK10K Consortium
  TITLE     Mutations in B3GALNT2 cause congenital muscular dystrophy and
            hypoglycosylation of alpha-dystroglycan
  JOURNAL   Am J Hum Genet 92 (3), 354-365 (2013)
   PUBMED   23453667
REFERENCE   3  (bases 1 to 3936)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001144851.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.40015.1,
                                           SRR26643292.57966.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-452               JAXUCZ010000017.1  56072501-56072952   c
            453-600             JAXUCZ010000017.1  56061501-56061648   c
            601-701             JAXUCZ010000017.1  56055152-56055252   c
            702-898             JAXUCZ010000017.1  56050637-56050833   c
            899-994             JAXUCZ010000017.1  56047079-56047174   c
            995-1105            JAXUCZ010000017.1  56041490-56041600   c
            1106-1184           JAXUCZ010000017.1  56038614-56038692   c
            1185-1368           JAXUCZ010000017.1  56037919-56038102   c
            1369-1494           JAXUCZ010000017.1  56035448-56035573   c
            1495-1654           JAXUCZ010000017.1  56034793-56034952   c
            1655-1711           JAXUCZ010000017.1  56034284-56034340   c
            1712-3936           JAXUCZ010000017.1  56030409-56032633   c
FEATURES             Location/Qualifiers
     source          1..3936
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.1"
     gene            1..3936
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /note="beta-1,3-N-acetylgalactosaminyltransferase 2"
                     /db_xref="GeneID:291212"
                     /db_xref="RGD:1306946"
     exon            1..452
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     CDS             338..1852
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /note="UDP-GalNAc:betaGlcNAc beta
                     1,3-galactosaminyltransferase, polypeptide 2"
                     /codon_start=1
                     /product="UDP-GalNAc:beta-1,
                     3-N-acetylgalactosaminyltransferase 2"
                     /protein_id="NP_001138323.1"
                     /db_xref="GeneID:291212"
                     /db_xref="RGD:1306946"
                     /translation="MRNWLVLLCPCVLGAALHLWHLWLRSPPAPHNTEPSAADQSALF
                     PQGKFRHYDVVVGVLSARNNHELRNVIRNTWLKDLLQHPTLSQRVLVKFIIGARGCDV
                     PVEDREDPYSCRLLNITSPVLNQEIEAFSFPEDASSSRLSEDRVVSVSFRVLYPIVIT
                     SVGVFYDASDIGFQRNITVKLYQTEQEEALFVARFSPPSCGTQVNKLWYKPVEQFILP
                     ESFEGTIVWESQDLHGLVSRNLHRVTVNDGGGVLRVLTAGEGALPHEFMEGVEGVAGG
                     FIYTVQEGDALLRSLYSRPQRLVDHIRDLQVEDALLQKESSIYDDIVFVDVVDTYRNV
                     PAKLLNFYRWTVESTSFSLLLKTDDDCYIDLEAVFNRIAQKNLDGPNFWWGNFRLNWA
                     VDRTGKWQELEYPSPAYPAFACGSGYVISKDIVDWLAGNSGRLKTYQGEDVSMGIWMA
                     AIGPKRHQDSLWLCEKTCETGMLSSPQYSPEELSKLWGLKELCGDPCQCEAKAR"
     exon            453..600
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            601..701
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            702..898
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            899..994
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1105
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1184
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            1185..1368
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1494
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            1495..1654
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1711
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
     exon            1712..3936
                     /gene="B3galnt2"
                     /gene_synonym="RGD1306946"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagtttgta cggcttagaa tctcaggcac gcctccctcc tgtgctcagc gagggactac
       61 gctcccgccc ttccggcaga caggagcgtg ctagaacgcg gactgaaggg ctgggcaaga
      121 gcgaggaggg cggaacgggt gggaaggcca cgcacgcggg ggcggtgcct tggccgggaa
      181 gcggcggccg ctcgtggtac ggatctacgg agcgagcggc gaagacaacg ccgggcgtgg
      241 gcgcgaacgc tgccggtagc acccggtgtt cttaggtccc ctcgctattg gacgggacgc
      301 gggagagcgc ggcgggggcg agaggtggga gcggccaatg cgaaactggc tggtgctgct
      361 gtgcccttgc gtgctcgggg ccgcgctgca cctctggcac ctctggctcc gttcccctcc
      421 ggccccccac aacacggagc ccagcgctgc agatcaatca gccttatttc ctcaggggaa
      481 atttcgtcac tatgatgtgg tagttggtgt gttatcagct cgaaacaacc acgaacttcg
      541 aaatgtgata aggaacacct ggctgaagga tttgctgcaa catcctacat taagtcaacg
      601 tgtgcttgtg aagttcataa taggtgcccg tggctgtgac gtgcctgtgg aagacaggga
      661 ggacccctac tcctgccgac tgctcaacat caccagtcca gttttgaatc aggaaatcga
      721 ggccttcagc tttcctgaag atgcctcctc atcccgactg tctgaggatc gagttgtcag
      781 cgtgagcttc agagttctct acccaatcgt gatcaccagt gtcggagtgt tctatgatgc
      841 cagtgacatt ggctttcaaa ggaacatcac agtcaagttg tatcagacag agcaggagga
      901 ggcccttttc gtcgctcgat ttagtcctcc aagctgtggc acacaagtga acaagctgtg
      961 gtataagcct gtggagcaat tcatcttacc agagagcttt gaaggtacga tcgtgtggga
     1021 aagccaagat ctccatggcc tcgtgtccag aaacctgcac agagtgacag tgaatgatgg
     1081 agggggtgtt ctcagagtcc tcacagctgg ggaaggggcc ttgcctcatg aattcatgga
     1141 aggtgtggag ggagttgcag gtggctttat ctacactgtt caggaaggcg atgcactatt
     1201 acgaagcctt tactctcggc cccagagact tgtagatcac atacgggatc tgcaagtgga
     1261 agatgcctta ctgcagaagg aaagcagtat ctatgatgac attgtcttcg tggatgttgt
     1321 ggatacttac cggaacgttc ctgcaaaatt attgaacttc tacagatgga ctgtggaatc
     1381 caccagcttc agtttgctgc tcaagacaga tgatgactgt tacatagact tagaagctgt
     1441 gtttaataga attgctcaga agaatctaga tgggcctaat ttttggtggg gaaatttcag
     1501 gttgaattgg gcagtggaca gaactggaaa atggcaggag ctggaatacc caagccccgc
     1561 ttaccctgcc tttgcctgtg ggtcagggta tgtgatctcc aaggatatcg ttgactggct
     1621 ggcaggcaac tccggaaggt taaagaccta tcagggtgaa gatgtcagca tgggcatttg
     1681 gatggcagcc ataggaccta aaagacacca ggacagcctg tggctgtgtg agaaaacctg
     1741 tgagacagga atgctgtctt ctcctcagta ctcaccagaa gagctgagca aactgtgggg
     1801 actgaaggaa ctgtgtgggg atccttgtca gtgtgaagca aaagcacgat aaccccaaag
     1861 actaggggtt gtaagtccga agagagccgt ggctggtact gagctgtaat tagcagggta
     1921 ttactagtgt tttgcacaga tcttaatgga tcaactgata actgcagcat aagtttttat
     1981 ttataaattg aaagattatt tataccaaat tattttataa aaatattgct aatttctgat
     2041 cacttatact aattagtaac tcattgttac catttttggt taaatggcca aattgagaaa
     2101 ataactccat ttgaatctca agtgggatta caaaatagct ctgcataact taattaggcc
     2161 agaaagacac tacaaagatg ctttgtggca cagggccaca tgtaccaaag tctgggctgc
     2221 tagaaatacc agtgtgtggg tctctgatac agacaacctg gccctgaaaa ggaagtgttg
     2281 taaactgaag tttgctatct ttaaagatgt ctatttacat acacatcatg ttttctttta
     2341 tagtttaatg taaatcctga gtggctcagc ttagcactga gacatttact ccccctaaac
     2401 tgtttttgtg agtatgagta aaagtaaaca gctcagggtt cagtgtcaca ggaagtagcg
     2461 taggaaggca ctctgccttg ctaatgtctg tcccgaagct tgaataggag gtggtgatct
     2521 gtggaagaca ggctcagttc aggcataatg taagagaaag tatgtggcag gtttgaagat
     2581 gtgttttctc agcttaaagg acacttctca gaatgaccaa ccaatcactg tttaaatcat
     2641 tttttagaag ataagcagcc cccagcagat gttaactcta ctagatttag actttctact
     2701 tcatatttac atcttcacat agtggaatgc cgtaagctat gaaaacaaaa agggcaggaa
     2761 aaccaatagt aatcaaagcc tttattattc tattaataaa caaccgaatg gtcttttccc
     2821 aacaaaacaa catcatttgt gagggcagag gttctgtttc tggtgtacac attccagcct
     2881 taactctcac ggttggcctg ctaccagcgc accagtaggc agtctccatt ctccacagaa
     2941 taaaactgta atggctgcag gtcattttct agttcgattt ctctgcccgg catctaaaat
     3001 tagaatcaaa tggggagtag aaggacaggg tgcatgttat tattcacgtc accctccaat
     3061 ggcaggtgag ttgtgaaggc aaaggctgcc tccatttaga acgtgttatg aaaggctcac
     3121 agtactgtgg agaacgaagc ttagctttgt gtctttgctt acaacgtacc ttggaacttt
     3181 cgtaggacaa cagaagttct gacacaggaa ccttgagaag acgtgacagc agtcccttta
     3241 ccttttgaat tgtcatggag tctatcaaag aaaagaaacc tttaaatgat gactacaagt
     3301 agaaacagct taggtgaggc agccattggt ggaaggttta agtcattcta ccaggtgatt
     3361 cttttaacaa aagaatggag ccagtgtttg atctaagtgg gcttgacagt ggggtgtcat
     3421 accattttta gtagcattta ctatttcttc ctcaatctga ataaccagaa ataattatct
     3481 cactgaagag gacaaaatat acaaaatata gtcctttgtg atactttgct aaggggctgc
     3541 tggagtgggg gccttgagag gcacctctca gccttctttt ccctttagaa gacagcatgg
     3601 acttgagtgg ttgctggtcc ctcccagcct gagtatccag tcaccatcag gatgtgcaca
     3661 catatgacca ctaggtgttg gaaagaaact gctctggtca gttaagaaca tagtaggaac
     3721 ttcttcccaa agacaggttg tggtaatagt ggatattttg attaagaata gtagtttctc
     3781 tgaagcttta gctgaaagta cagcaatagt gtgatgtacc acaaatatca ctatgtactc
     3841 aattattttt ctataaaatt gtttttataa atgctttgtt tttatgcgac ttgtgataat
     3901 aaatcttctc tattttagaa taaactagcc ttttct
//
