LOCUS       NM_001013158            2074 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus beta-1,3-N-acetylgalactosaminyltransferase 1
            (globoside blood group) (B3galnt1), mRNA.
ACCESSION   NM_001013158 XM_227248
VERSION     NM_001013158.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Hennet,T., Dinter,A., Kuhnert,P., Mattu,T.S., Rudd,P.M. and
            Berger,E.G.
  TITLE     Genomic cloning and expression of three murine UDP-galactose:
            beta-N-acetylglucosamine beta1,3-galactosyltransferase genes
  JOURNAL   J Biol Chem 273 (1), 58-65 (1998)
   PUBMED   9417047
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Mar 12, 2021 this sequence version replaced NM_001013158.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079206.1, SRR26360172.2167637.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676809 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-266               JAXUCZ010000002.1  156186479-156186744 c
            267-331             JAXUCZ010000002.1  156161863-156161927 c
            332-2074            JAXUCZ010000002.1  156157234-156158976 c
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q32"
     gene            1..2074
                     /gene="B3galnt1"
                     /gene_synonym="B3galt3"
                     /note="beta-1,3-N-acetylgalactosaminyltransferase 1
                     (globoside blood group)"
                     /db_xref="GeneID:310508"
                     /db_xref="RGD:1304797"
     exon            1..266
                     /gene="B3galnt1"
                     /gene_synonym="B3galt3"
                     /inference="alignment:Splign:2.1.0"
     exon            267..331
                     /gene="B3galnt1"
                     /gene_synonym="B3galt3"
                     /inference="alignment:Splign:2.1.0"
     exon            332..2074
                     /gene="B3galnt1"
                     /gene_synonym="B3galt3"
                     /inference="alignment:Splign:2.1.0"
     CDS             366..1361
                     /gene="B3galnt1"
                     /gene_synonym="B3galt3"
                     /EC_number="2.4.1.79"
                     /note="b3Gal-T3; beta3Gal-T3; beta-3-Gx-T3;
                     beta-3-GalNAc-T1; beta-1,3-GalTase 3; globoside synthase;
                     beta-1,3-galactosyltransferase 3;
                     galactosylgalactosylglucosylceramide
                     beta-D-acetyl-galactosaminyltransferase;
                     UDP-N-acetylgalactosamine:globotriaosylceramide
                     beta-1,3-N-acetylgalactosaminyltransferase; beta3GalT3;
                     beta-1,3-GalNAc-T1; UDP-Gal:betaGlcNAc beta
                     1,3-galactosyltransferase, polypeptide 3;
                     UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase,
                     polypeptide 1"
                     /codon_start=1
                     /product="UDP-GalNAc:beta-1,
                     3-N-acetylgalactosaminyltransferase 1"
                     /protein_id="NP_001013176.1"
                     /db_xref="GeneID:310508"
                     /db_xref="RGD:1304797"
                     /translation="MAPAVLTAIPNRMSLRSLKWSLLLLSLLSFLVIWYLSLPHYNVI
                     ERVNWMYFYEYEPIYRQDFQFTLREHSNCSQQNPFLVILVTSRPSDVKARQAIRVTWG
                     EKKTWWGHEVLTFFLLGQEAEREDKVLALSLEDEHALYGDIIRQDFLDTYNNLTLKTI
                     MAFRWVIEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIENYSYRGF
                     FHKNHISYQEYPFKVFPPYCSGLGYIMSGDLVPKIYEMMGHVKPIKFEDVYVGICLNL
                     LKVDIHIPEDTNLFFLFRIHLDVCQLRRVIAAHGFSSKEIITFWQVMLRNTTCHY"
ORIGIN      
        1 gggctccggc cttcccagct ggtctcagct ggttcttgag gctcgggacc agggaccgga
       61 gagtctggac tacttggggg agcgccctat gcgcggacgc aggaatccat cctgccctgc
      121 ctcccgggct gtaagcctag ggggtggcca ggttgtcctc gcggccgagg agaagcggag
      181 aatacggtcg gcaaaccggt ggacctgcag caggcccgga gggaggaaca cacattccag
      241 gcgggaaagg gcctgcggtc ctccgggtgt gagccttcta agtagcatat ggcaaaaatt
      301 taggccaagc tgtgaagccc ctgtggttaa ggacctgtgc cttctgtact tctctgctgc
      361 tgtggatggc cccggctgtc ttgactgcca ttcccaatag gatgtcactg agatccctca
      421 aatggagcct cctgctgctg tccctgctga gcttcctggt gatctggtac ctcagccttc
      481 cccactacaa tgtgattgag cgtgtgaact ggatgtactt ctatgagtat gagccaattt
      541 acagacaaga ctttcaattc acactcaggg aacattcgaa ctgctctcaa caaaacccat
      601 tcctggtcat cctggtgacc tctcgtccct cagatgtgaa agccagacaa gccattagag
      661 ttacttgggg cgagaaaaaa acctggtggg gacacgaggt tcttacattt ttcttacttg
      721 gccaggaggc tgaaagggaa gacaaggtat tagcattgtc cttggaggat gaacatgctc
      781 tctatggcga cattatacgg caagactttt tagataccta caataacttg accttgaaaa
      841 ccattatggc tttcaggtgg gtaattgaat tttgccccaa tgccaagtat gtcatgaaaa
      901 cagacaccga tgttttcatc aacacgggca atttagtcaa gtatctttta aacctaaacc
      961 actcagagaa gtttttcaca ggctatcctc taattgaaaa ctattcctat agagggtttt
     1021 tccataaaaa ccacatttca taccaagaat acccgttcaa ggtgttccct ccctactgca
     1081 gtgggctggg ctacatcatg tccggcgacc tggtgccgaa gatctacgag atgatgggcc
     1141 acgtgaaacc catcaagttt gaggatgtct atgtcggcat ctgtctgaat ttgttaaaag
     1201 tggacattca tattccagaa gacacaaatc ttttcttcct gttcagaata cacttggacg
     1261 tgtgtcagct gagacgggtg attgcagccc atggcttttc ctccaaggag atcatcacct
     1321 tctggcaggt catgctgagg aacaccacct gccactacta agcccttatg tcatccggca
     1381 ggaggaggaa ggcactatgc agaaagagtc agagttagca ctgcaggctt gcctggacgt
     1441 cactcacgga gcctacctag actggagcgc caaggcctga acttacagta tttgtttaac
     1501 ttggatcctt taaaagtgat gatcaggagt caaacatcaa gcaaatgaat ggttttgcta
     1561 ataaaatcaa acggtcagac agtctggatg actcaggctg tagattagaa tttcttaaga
     1621 tttccctgaa agaaaaacta accattccac agccagaaga tagtgtggag ttgtacttat
     1681 tagatagtct agtcacagtg gttcagtgca tatcttaggt ggttattatt aaaagatata
     1741 cacatacata tttcttgtaa aaagctttac tgaagttata ttgaaaaaat tcatttgtat
     1801 tgtttccttt gcaaggtact gaatgatatg gactgcagag gtaccaagtc aattattatt
     1861 taatgttatt tcaactttct aagtgtttaa atgttatgat ggtttcagtc tatagtgaat
     1921 tgcctttcgc atttgagctt tgttttattt actgtactga gcagtttaat tctgaaagtc
     1981 ccattactgt gacgtcctag gttattactg tcagtagttt gttgaacttt gttgcactgt
     2041 aaacatatgg agaattaaag caaaaaaaat ttga
//
