LOCUS       XM_039091370            4522 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus axonemal dynein light chain domain
            containing 1 (Axdnd1), transcript variant X1, mRNA.
ACCESSION   XM_039091370
VERSION     XM_039091370.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091370.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4522
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4522
                     /gene="Axdnd1"
                     /note="axonemal dynein light chain domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:501861"
                     /db_xref="RGD:1566124"
     CDS             1026..4334
                     /gene="Axdnd1"
                     /codon_start=1
                     /product="axonemal dynein light chain domain-containing
                     protein 1"
                     /protein_id="XP_038947298.1"
                     /db_xref="GeneID:501861"
                     /db_xref="RGD:1566124"
                     /translation="MSLHKVSDTSLTSPSTSEAKQAKLYVGKEAKVLPELKEKKSMVN
                     HLKPLPPSSQNEFRIPDEVLLSLNNAANAGPCPENLLPTKKHKAPKGALPRLVDHVWQ
                     HPIRRNKFKYLIDHPVTLTGAGRDISFLYDVKYVKGETRENKLCPPNKSAQSQNGAMV
                     PHKKTLADTLVPEEFHIVSNTGVSGLECYDDKYTTLLTDSENRLLLFPSMKPNKRVEV
                     VQLSDVMDTMLERAGAENEDYVGPTKMHHLLNVLKREQSIYNTVFHELIRQVSVDCAD
                     RGELLSRIREKYVQMLDHIARQMIDFYKDLVTQRMMDQRILQELYNFKNVIEELTREL
                     CLVRAHDKKLTKEVEKVQKDLAEALLEAEKNAKIVEDYHDLYTMQRGRMESDIKLLMT
                     ERDIWSSATYELALKVIERNRVIMAKKLYLSEKGWNKYAKHFIIMLSTKDTGDLAMVE
                     KLTEKWKKLVNKFKHDVERTEESTKEKSQTVKDGLIKWQQFFNNNIGKDILIPNKKSP
                     FSVVLNDFKEFQKTLDVEKEKFTGDFLLSRYDSLKMIKRLQENWMDIGFGILSRHKNM
                     DGLLPPEHEYMEEMVKNINKFYREYEIRINGDHGVSKILPNLLISIDTCIFKLENFLD
                     YSKVPIDEWFEIDEKINEMKLQLEALLNIIGSVPQDIDTDMDSGSILQVHIFEMIQQW
                     ILKLDNEIANGQIELLRHMDELHIAMIQWMVNLLTVMLPDFTEKITLPKMKGDNLGFA
                     EEEEREIGVAELEINAVSLAKRLARYSSHLHSCCIGMVRAMALSRAAHLQKNPAKDRQ
                     ELDRMNRECYDWISTCSYLISDIKGRRVRLLSYEEAEKLLGEEEATKIYFDPEKPSLG
                     DDTDDEIDFKKSKIQEKEAPPPPSEAAAEATEAAEATEAGEAGEAGEAEAGEAGEAKT
                     AEATEAAEATEAAEATKAEVTTEQEPSTSTNVKTIRYIKKDENIHSKPLLEEGIFLTW
                     RESAKQGVLEPKYLEIMHVLEHMQDKLIQMDARTREAEERFDEVNEELHHTIMKNRDL
                     EKELEELVKKTIKGSHIKIEIPKEESPDNRGENEGDEHKQTKKPPKSTKKEAQSMDSS
                     ETSGSRTKSKTKPK"
ORIGIN      
        1 aagttatttc tttcacagtt ggggagcctg cgaagagcta agtgctggca gctccagttt
       61 ggtggctcat ggcaataatc ccagcacttg agagacgggg acctgggcta tagaaacccc
      121 cgtctcaacc cctacctggg ctccacttcc caaagaggaa tgaccacaga atagagaaag
      181 ccagagagtc aatgccactg caaatgcaaa ctggggcccg tttatttctt tgtaacctgt
      241 aacataattc ttccattagt ctaggtaaga aagtcctgct cagttatctg tcttctcctt
      301 cagctactgt tggcatataa agctaccaga cactaagaag atcattggca ctcacaaaca
      361 tgaactgagc gcatagaagt tacttcaaca acagaactag gatgtgtgtt tgctacttta
      421 cttccccccc ccctcctttt aagacaaggt tttcactaag ttgtcctggc tgattcagaa
      481 ctcatagtag actacactac ccttgaacag attcaaggac agaaaggact catttctgca
      541 gcaccctctc gtgtgggcgg ggctccggga gtctcttcga gaggctcggg tctgcgcttg
      601 cgcaatctgc acccggaagc acggcttcga gagactgtcc cattccgaga caacagccgg
      661 attaaatatt cttccttatt gctactaccc gtgactaaag tcacacggaa gcatcttgag
      721 aatgcagaaa ctgtttttca tccgtcttct tctgacagct cctccggagg cagctcggcc
      781 agcaaagttg ctgggggggg gggggttcct gcgttgctat gacgacgcag ggcgttccag
      841 aaaagggatg gccggccgac gccgggtggc aaacaccagg gtacagtgga gggtgtcatg
      901 cagtcctaca gtgcatttct aggggaatta tggacagatt gatttgtcat ggcacgactt
      961 cgatttgttt ctgaattaac tttttggagg aatatttccg agagtgatag caggcgttgt
     1021 taattatgtc tctccacaaa gtgtcggaca cttcgctgac ctccccatca acatctgagg
     1081 ccaaacaggc aaaactgtat gtaggcaagg aggcaaaagt gcttccggag ctgaaggaga
     1141 aaaaatccat ggtgaaccac ctcaaacccc tccctccttc ctctcagaat gaattcagaa
     1201 tccccgatga agttcttctc tctctgaaca atgcagccaa cgccggtccc tgtcctgaaa
     1261 acttattgcc tacaaagaaa cataaagccc caaagggtgc ccttccacgt cttgtagatc
     1321 atgtctggca acaccctatt cggaggaata aattcaaata cctgattgat catcctgtca
     1381 ccctaacagg agctggaagg gatatttctt tcctgtatga tgttaaatac gtaaaaggag
     1441 agacgaggga gaacaaactt tgccccccaa ataagtcagc acagtcacag aacggtgcca
     1501 tggtgcctca caagaagaca ttagcagaca ctttggttcc tgaagaattt catattgtgt
     1561 caaatacagg agtttcgggt ttggagtgct atgatgacaa atacaccacc ctcctcacag
     1621 acagcgagaa taggctgctg ctcttcccat ccatgaaacc taacaagaga gtagaagtgg
     1681 tccagctgag cgatgtgatg gacaccatgc tggaaagggc tggagcggaa aatgaggatt
     1741 acgtagggcc aaccaagatg caccacctgc tgaacgtgtt gaagagggaa cagagcattt
     1801 acaacacagt gtttcatgag ctgattcgac aggtcagcgt ggactgcgca gacagaggag
     1861 agctactgtc aagaatcaga gagaagtatg tgcaaatgct tgaccatatt gcccggcaga
     1921 tgattgactt ttacaaagac ctggtgactc agcggatgat ggaccagcgc atcttacaag
     1981 aactgtataa cttcaagaat gtgatcgagg aactgaccag ggaactttgt ctggttcggg
     2041 cccatgataa gaaattaaca aaggaagtgg agaaagtcca gaaggacctg gcagaagccc
     2101 ttttggaagc ggagaagaat gccaaaatag tagaagacta ccatgactta tacacaatgc
     2161 agagagggag gatggagagc gatattaaac tcttaatgac agaaagagac atttggagct
     2221 cagccacata tgaactggcc ctgaaggtaa ttgaaagaaa tagagtcata atggctaaaa
     2281 aactctacct cagtgaaaaa ggctggaata aatatgccaa gcacttcatc ataatgctgt
     2341 ccactaagga cactggagac cttgcaatgg tggagaagtt gacagagaag tggaaaaagt
     2401 tagtgaacaa atttaagcac gacgtggaac gcacagagga atctacaaaa gaaaaatcac
     2461 aaaccgtgaa ggatgggctc atcaaatggc agcaattctt caataataac attgggaaag
     2521 atattttaat ccctaataag aaaagcccat tcagtgtggt ccttaacgac ttcaaggagt
     2581 ttcaaaagac gctggatgtg gagaaagaaa aatttacagg ggattttctg ttgtctagat
     2641 atgactctct caaaatgatt aaacgattac aggaaaactg gatggacatt gggtttggga
     2701 tacttagtcg ccataaaaat atggatgggt tgttgccccc agagcacgag tacatggagg
     2761 aaatggtaaa aaacataaac aaattctaca gagaatatga aataagaata aacggtgatc
     2821 atggtgtatc taaaattctt ccaaacttgc ttatttctat agacacatgt attttcaagt
     2881 tagaaaactt cctagattat tctaaagtgc ccattgatga gtggtttgaa attgatgaaa
     2941 agattaacga aatgaagctt cagctggaag ctctgttaaa cattattggc tcggttccac
     3001 aggacataga cacggacatg gactctggct cgatactcca agtacacata tttgaaatga
     3061 ttcaacaatg gattttgaag ttagacaacg aaattgccaa tggtcaaatt gaacttcttc
     3121 gccacatgga tgaattgcat atagctatga tccagtggat ggtaaacttg ctgaccgtaa
     3181 tgcttcctga ttttactgag aaaatcactc tcccaaagat gaagggggac aacttagggt
     3241 ttgccgagga agaggagcgt gaaataggag tcgcggaatt agagataaac gcggtctcac
     3301 tggccaagcg gctggctcgg tactccagcc acttgcacag ctgctgcata ggcatggtaa
     3361 gagcaatggc cctgagtaga gctgcccact tacagaagaa tcctgctaag gaccgccagg
     3421 aactggatag gatgaataga gaatgttacg attggatcag cacatgctca tacctcattt
     3481 ctgacatcaa aggcaggaga gtacgactac tgtcatatga ggaagcagag aagctgctcg
     3541 gggaagagga agccacaaaa atttattttg acccagaaaa accttctctt ggtgatgata
     3601 ctgatgatga aattgacttt aagaagtcta agattcaaga aaaggaagca ccaccaccac
     3661 catctgaagc agcagcagaa gcaacagaag cagcagaagc aacagaagca ggagaagcag
     3721 gagaagcagg agaagcagag gcaggagaag caggagaagc aaaaacagca gaagcaacag
     3781 aagcagcaga agcaacagaa gcagcagaag caacaaaagc agaggttaca acagaacagg
     3841 aaccttcgac atctacaaac gtgaaaacca ttcgatacat taagaaagat gaaaatattc
     3901 atagcaaacc tctgcttgaa gaaggcatat ttttaacctg gagagaatca gctaagcaag
     3961 gtgtattgga gccaaagtat cttgaaataa tgcatgtact tgaacatatg caggacaagc
     4021 taatacagat ggatgccagg accagagagg cagaggagag gtttgatgag gtgaacgagg
     4081 agcttcatca caccatcatg aaaaacagag atctagagaa ggagctagaa gagctggtga
     4141 agaaaaccat aaaggggtca cacataaaga tagaaatccc caaggaggag agcccggata
     4201 acaggggaga gaatgaagga gatgagcaca aacaaacaaa aaagccccca aaatccacaa
     4261 agaaagaagc acagtcgatg gacagttctg aaacttctgg aagtcggact aaatctaaga
     4321 ccaaacccaa atagcctctc cggagactgg ggttcacggt ggctgtgtcc gtgaacatgc
     4381 ctaaggattg ctgagctgta gcattggcaa cgcggctcac ccgcttgggc tcccttagca
     4441 acagccatta gaagcatggc agaggccata ggaagtcggt atatgagttt acttgtcaga
     4501 ttaaaaacag cttatgagaa ag
//
