LOCUS       XM_006236564            3487 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus AVL9 cell migration associated (Avl9),
            transcript variant X1, mRNA.
ACCESSION   XM_006236564
VERSION     XM_006236564.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006236564.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3487
                     /gene="Avl9"
                     /note="AVL9 cell migration associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     10 samples with support for all annotated introns"
                     /db_xref="GeneID:312371"
                     /db_xref="RGD:1564615"
     CDS             341..2386
                     /gene="Avl9"
                     /codon_start=1
                     /product="late secretory pathway protein AVL9 homolog
                     isoform X1"
                     /protein_id="XP_006236626.1"
                     /db_xref="GeneID:312371"
                     /db_xref="RGD:1564615"
                     /translation="MEKAGRESDGAPCGPVLHIVVVGFHHKKGCQVEFSYPPLIPGDG
                     HDSHAVPEEWKYLPSLALPDGAHNYQEDTVFFHLPPRNGNGATVYGISCYRQIEAKAL
                     KVRQADITRETVQKSVCVLSKLPLYGLLQAKLQLITHAYFEEKDFSQISILKELYEHM
                     NSSLGGASLEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYISPVNRLVGAL
                     MTVLSLFPGMIEHGLSDCSQYRPRKSMSEDAGLQEGNPSADDFISESTSDNLNTSLGI
                     VTRIVAVNHGEDAVPPTEKPYFQVEGNNNKGQEHSDTGRYLELPPRPSPESSESDWET
                     LDPSVLEDASLKEREQMGSDQTHLFQKDSVPSDSPPITVQPQANTRQVVLIPGLISGL
                     EEDQYGMPLAIFTKGYLCLPYMALQQHHLLSDVTVRGFVAGATNILFRQQKHLSDAIV
                     EVEEALIQIHDPELRKLLNPTTADLRFADYLVRHVTENRDDVFLDGTGWEGGDEWIRA
                     QFAVYIHALLAATLQLDNEKMLSDYGTTFVAAWKNTHNYRVWNSNKHPALAEINPNHP
                     FQGQYSVSDMKLRFSHSVQNSERGKKIGNVMVTTSRNVVQTGKAVEITLQLFFAVFKL
                     PAPLLLPLGLLEHRHCDTRTQFIERSQGCLLVCSVPCSACIPARPLAQEWYQPRWAK"
ORIGIN      
        1 cccgccctta tccgatttat tttcctttaa tcccgccccc tagtcaggct ccgcccacac
       61 tgcctcagac gctgccggga catgggcctc agggtaccgc cccgccctgc cggaggcggc
      121 tgtagcgtca ggtgacagcc cggaagctgc ggaagcggat gaagcagagc ggtggaggcc
      181 ctgtggggct tcgcggaggt gagggagctg gtcggcggcc cccgagcccg tggcgcagcg
      241 cgtatgtggc gctccggttg acatctgaaa gccgtcgctc tgctttgtgc ggcccggcct
      301 cggcgtttgg agtcgcggtg cgggtctacg gcgagcgccc atggagaagg ctgggcgtga
      361 aagtgacggc gccccctgcg ggcctgtcct gcatatcgtg gtggtcggct ttcaccacaa
      421 gaagggctgc caggttgagt tctcttaccc accactaatt ccaggagatg gccatgacag
      481 ccacgctgta cctgaagagt ggaagtacct gccttccctt gccttaccag atggtgcaca
      541 taactatcag gaagatactg tgttttttca cttgccaccc agaaatggaa atggagccac
      601 agtatatggt atctcttgtt atcgacaaat tgaagccaag gcattaaaag taaggcaagc
      661 cgacatcacc agagaaactg ttcagaaaag tgtctgtgtt ttaagcaagc tgcctcttta
      721 tggcttactt caagcaaaac ttcaacttat tacacatgca tattttgaag agaaagattt
      781 ttcccaaatt tccattctaa aggagctcta tgagcatatg aacagttcct tgggaggggc
      841 ctcattagaa ggatcacagg tgtatcttgg tctgtctcct cgagatcttg tccttcattt
      901 tcgacacaag gtcttgatcc tgtttaagct aattcttctt gaaaagaagg ttctgtttta
      961 catttctcca gtgaataggt tggtgggtgc actaatgact gtgctatccc tttttccagg
     1021 catgattgag catggtctca gtgactgttc tcagtataga ccccgaaaga gtatgtctga
     1081 agatgctgga cttcaggaag gtaatccctc tgcagatgat tttatttctg agtctacttc
     1141 tgacaactta aataccagct tgggaattgt cacaagaatc gtggcagtaa accatggaga
     1201 agatgctgtt cctccgacgg agaagcctta cttccaggta gaaggtaaca acaacaaagg
     1261 acaagaacac agtgatactg gccgatattt ggaacttcca cctcgaccat ctccagagtc
     1321 ttcagaaagt gactgggaaa ctttggatcc tagtgtctta gaggatgcca gcttaaaaga
     1381 aagggagcag atgggctcag accagacaca cttattccaa aaggactctg tgccctcaga
     1441 cagtcctcca atcacagtac aacctcaagc taataccaga caggtggtcc tgataccagg
     1501 gctcatttct ggtttggaag aagaccaata tggcatgcct ctggccatct ttacaaaggg
     1561 atatctgtgt ttgccttaca tggcactgca gcagcatcat cttctctccg atgtcactgt
     1621 tcggggattt gtggccggag ctactaacat cctttttcga caacagaagc acctcagtga
     1681 tgccattgtg gaagtagaag aagcactgat ccagatccat gatccagaac ttaggaagct
     1741 gcttaaccca acaactgcag acctaaggtt tgcagattac ctagtgaggc atgtgactga
     1801 gaaccgggat gatgtcttcc tggatggcac aggctgggag ggaggtgatg aatggatccg
     1861 ggcccagttt gcggtctaca tccacgctct gctggctgct acactgcagt tagataatga
     1921 aaagatgtta tcagactatg ggacaacttt tgttgctgcc tggaagaata ctcacaacta
     1981 cagggtatgg aacagcaata agcatccagc acttgcagag ataaatccaa accatccttt
     2041 tcaaggccag tactccgtgt cagacatgaa actcagattc tcacattctg ttcagaacag
     2101 tgaacgtggc aaaaaaattg gcaatgtcat ggtcacaacc agccggaatg tggtacaaac
     2161 aggaaaagcc gttgaaatca ctttacagct cttctttgcc gtgttcaaat tgccagctcc
     2221 actgctcttg cctttagggt tactggaaca tagacactgc gataccagga cacagttcat
     2281 cgagagaagt caaggctgct tattggtttg ctcagtgcct tgctcagcct gcataccagc
     2341 aagaccactt gcccaggagt ggtaccaacc acggtgggct aaataatcct acactaatca
     2401 ttaatcaaga aaatgcccta taaatgtatg cacagtctgt tagtagcatt ttcccaatta
     2461 agattccccc tttcagatat gtctaggctt gtgtcaagtt aatgagaacc cacctgcaca
     2521 ccatgggact gagtctataa ccaggtgtct accagatgcc tggtaggcgg aacagaagca
     2581 tgtatacatt agacaaaagg agatatgagt agggcacaac tggaaagtgt gatgggtgta
     2641 cttagactga aatttataat ttataaataa tttatttcta aaatagtcca ttgaacattt
     2701 atcacctgga tataattctc tgaagattaa gatgtcaggg aactcaaatg taagaactga
     2761 aaccataggc agggaggact gctatatttg gtttccggtg ttgctgctgt taattaaatt
     2821 gcaacccaag tctcctctac accccctttc tctaacatca gtgacttaaa taatctcaca
     2881 ctcacagcag cttcaaaata ttattttaaa ataacaagac ttgagaccta caagactctc
     2941 ttctagtata gtactactct tctaatacaa gtagcttcag agaatgtgtg cctgtgttct
     3001 gtctacatgt gtgcgtgggt atccatggag accagaagca ttgggtctcc tggagctaga
     3061 gttaaaggca gtgttgagtc tcctgatatg ggtgctagga actgaatttg atcctggaag
     3121 aacagtaaac agtcttaatt cctgaggcat ctctccacct gtatatttag ctatttaagc
     3181 tctccagata attctcatta cagtcagaat tgctagtgct atggctacaa aattatgtta
     3241 ttagccccca caaagtgcct agtgtgttga aatattactc agtttagtct tttgaactaa
     3301 aaatttaagt ggtgtctcag taactacaag tgagttaacc ttattcatgt ttattgggtt
     3361 ctcgttgtct aaccaaatat tagatgtggt tcactattaa aggacctgcc tacattttat
     3421 tcccagcatg caaaatactt gaaccttata ttaagctcat ccatttttcc ttttgttttt
     3481 ctttttc
//
