LOCUS       XM_008763029            1331 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus AUP1, lipid droplet regulating VLDL
            assembly factor (Aup1), transcript variant X2, mRNA.
ACCESSION   XM_008763029
VERSION     XM_008763029.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008763029.3.
            
            On Jan 21, 2021 this sequence version replaced XM_008763029.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1331
                     /gene="Aup1"
                     /note="AUP1, lipid droplet regulating VLDL assembly
                     factor; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 33 ESTs, 8 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 150 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:680423"
                     /db_xref="RGD:1591777"
     CDS             130..1209
                     /gene="Aup1"
                     /codon_start=1
                     /product="lipid droplet-regulating VLDL assembly factor
                     AUP1 isoform X1"
                     /protein_id="XP_008761251.1"
                     /db_xref="GeneID:680423"
                     /db_xref="RGD:1591777"
                     /translation="MEPPPAPGPERLFDSHRLPSDGFLLLALLLYAPVGLCLLVLRLF
                     LGLHVFLVSCALPDSVLRRFVVRTMCAVLGLVARQEDSGLRDHRVRVLISNHVTPFDH
                     NIVNLLTTCSTPLLNSPPSFVCWSRGFMEMDRRVELVESLKKFCASTRLPPTPLLLFP
                     EEEATNGREGLLRFSSWPFSIQDVVQPLTLQVQRPLVSVTVSDASWVSELLWSLFVPF
                     TVYQVRWLHPIRRQLGEENEEFALRVQQLVAKELGQIGTRLTPADKAEHMKRQRHPRL
                     RPQSVQSSFPSPPSPSSDVQLTILAQRVKEVLPHVPLNVIQRDLARTGCVDLTITNLL
                     EGAVAFMPEDVTEGSQSLPTASAPK"
ORIGIN      
        1 ttccggggcg cctccgggcc acgggttcta gcgtccctgc ggctgcccaa agactccgcc
       61 ttcccaggag cccccgcggc cctgcgaaga tggcggcgac agcggcccca ctttcctgaa
      121 gcggctgcga tggaacctcc cccagctccg gggccggagc ggctctttga ctcgcaccgg
      181 ctcccgagtg acggcttcct gctgctcgcg ctattgctct acgcgccggt cggcctctgc
      241 ctcctggttc tgcgactctt cctcgggctc cacgtcttcc tggtcagctg tgctcttcct
      301 gacagcgtcc tccgcaggtt cgtggtacga accatgtgtg cggtactggg gctcgtggcc
      361 cgacaggagg actccggact ccgggatcac cgcgtcaggg tccttatttc caaccatgta
      421 acaccttttg accacaacat agtcaacctt ctcaccacct gtagcacccc tctactcaat
      481 agtcccccca gctttgtatg ttggtctcgg ggcttcatgg agatggatag gcgggtggag
      541 ttggtggagt cactcaagaa attctgtgct tccacgaggc ttccacccac acctttgctg
      601 ctcttccccg aggaagaggc caccaatggc cgagaagggc tcctgcgttt cagttcgtgg
      661 ccattttcta tccaggatgt ggtacaacct cttaccctac aagttcagag acccctggtc
      721 tctgtgacgg tgtcagatgc ctcctgggtc tcagaactgc tgtggtcact tttcgtccct
      781 ttcacggtgt atcaagtaag gtggcttcat cccattcgtc gacagctggg ggaagagaat
      841 gaggagtttg cactccgtgt acaacagctg gtggccaaag aattgggcca gatagggaca
      901 cggctcacgc cagcagacaa agcagaacac atgaagcgac agagacaccc cagattacgc
      961 ccccagtcag tgcagtcttc ttttccttct cctcccagcc cttcttctga tgtgcaactg
     1021 accattctcg ctcaaagagt caaggaggtt ttgccccatg tgccattgaa tgtcatccag
     1081 agagacctgg ctaggactgg gtgtgtagac ttgaccatca ccaatctgct tgagggggct
     1141 gtggctttca tgcctgaaga tgtcactgag ggatctcagt ccctgcccac agcctctgcc
     1201 ccaaagtagg cattcgatgg gtgtttaatg atgatgactt cgcaagccct ctgacattgt
     1261 gatcacctca gttccccagc tctggcctgg tgacccctca gcccacagcc ctaacatttg
     1321 ccaagtcttc c
//
