LOCUS       XM_039095856             953 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus AU RNA binding methylglutaconyl-CoA
            hydratase (Auh), transcript variant X9, mRNA.
ACCESSION   XM_039095856
VERSION     XM_039095856.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095856.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..953
                     /gene="Auh"
                     /note="AU RNA binding methylglutaconyl-CoA hydratase;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 22 ESTs, 1 long SRA read, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 69 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361215"
                     /db_xref="RGD:1306087"
     CDS             43..597
                     /gene="Auh"
                     /codon_start=1
                     /product="methylglutaconyl-CoA hydratase, mitochondrial
                     isoform X8"
                     /protein_id="XP_038951784.1"
                     /db_xref="GeneID:361215"
                     /db_xref="RGD:1306087"
                     /translation="MAAAAAPGALGALSAGRVRLVAACCARLGSAAWARGTAPRRGYS
                     SEVKTEDELRVRHLEEENRGGTQRLPRAIGMALAKELIFSARVLDGQEAKAVGLISHV
                     LEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQT
                     ISTKDRLEGLLAFKEKRPPRYKGE"
ORIGIN      
        1 ggggcggagc ctggccgcgg gcgcccgctg taaacataca atatggcggc ggcggctgct
       61 cccggcgctc tgggcgcctt gagtgcgggt cgggtccgcc tggtggccgc gtgctgcgcg
      121 cgactaggct ctgcggcatg ggctaggggt accgccccga ggaggggcta cagctctgag
      181 gtgaaaaccg aggatgagct gcgcgtgcgg cacctggagg aggagaaccg aggagggaca
      241 cagagattac cacgtgccat cgggatggcc ctggcaaagg agctcatctt ctctgcacgc
      301 gttcttgacg gtcaggaggc caaagccgtg ggcttgatca gccacgtgtt agaacagaac
      361 caggaagggg atgctgccta caggaaggcg ctggacctgg caagagagtt tctacctcag
      421 gggcctgttg ccatgagagt ggccaaacta gcaattaacc aaggcatgga ggttgactta
      481 gtgacagggt tagccataga agaagcctgc tatgctcaga ccatctcaac gaaggacaga
      541 ctggaaggtc ttcttgcttt caaggagaaa agaccccctc gctacaaggg agagtagggg
      601 gagcgcccga gacgccctcc ctggagtgcc agaagtgttt cagagccgcc ccacgctgcc
      661 acggggaatc tcgatgacca aagtggagag tgggttctca ctacacctgg agcaggcccg
      721 tctatactca agccactgtg cgccatgtcc tatttattca gatttataaa gctagccatg
      781 tccgcagtca gaacacataa aaattaggtg tatgttttta atatttcccg catatcaggc
      841 tttgtcgtta attttttaat gtgaataatt tatattgcac actctaggga ataatcgatt
      901 gtatgtctac tgtgctgcat taagaaaata aaactatttc tgtatcccaa aaa
//
