LOCUS       XM_039095853            8458 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus AU RNA binding methylglutaconyl-CoA
            hydratase (Auh), transcript variant X5, mRNA.
ACCESSION   XM_039095853
VERSION     XM_039095853.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8458
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8458
                     /gene="Auh"
                     /note="AU RNA binding methylglutaconyl-CoA hydratase;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 20 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 54 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:361215"
                     /db_xref="RGD:1306087"
     CDS             42..698
                     /gene="Auh"
                     /codon_start=1
                     /product="methylglutaconyl-CoA hydratase, mitochondrial
                     isoform X5"
                     /protein_id="XP_038951781.1"
                     /db_xref="GeneID:361215"
                     /db_xref="RGD:1306087"
                     /translation="MAAAAAPGALGALSAGRVRLVAACCARLGSAAWARGTAPRRGYS
                     SEVKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLLKMLSKAVDALKSDKKVRT
                     IIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLAL
                     GGGLELALACDIRVAASSAKMGLVETKLAIIPGGGPCDSHPGNLKDLFPGCEKLRCTG
                     "
ORIGIN      
        1 gggcggagcc tggccgcggg cgcccgctgt aaacatacaa tatggcggcg gcggctgctc
       61 ccggcgctct gggcgccttg agtgcgggtc gggtccgcct ggtggccgcg tgctgcgcgc
      121 gactaggctc tgcggcatgg gctaggggta ccgccccgag gaggggctac agctctgagg
      181 tgaaaaccga ggatgagctg cgcgtgcggc acctggagga ggagaaccga ggcattgtgg
      241 tgcttggaat taacagagct tatgggaaaa attcactcag taaaaatctt ctcaaaatgt
      301 tatcaaaagc ggtggacgca ttaaaatcgg ataagaaagt tcggaccatt atcatcagaa
      361 gcgaagtccc tgggatattc tgtgctggcg ctgaccttaa ggaaagagcc aagatgcatt
      421 ccagtgaagt cggtcccttt gtctccaaga tccgagcagt gatcaatgac atcgctaacc
      481 ttcctgtgcc caccatcgct gccatagatg gcctggccct aggagggggc ctggagctgg
      541 ctttagcgtg tgacattcga gtagcagctt cttctgcaaa aatgggcctg gtggaaacga
      601 agttggcgat tatccctggt ggaggaccct gcgattctca tcctggaaac ttgaaggacc
      661 ttttccccgg ctgtgagaaa cttagatgca caggctgatt ccttcctgcc tcagttggac
      721 cttgcttgcc ctgggagaaa ggagcaggcc aagaccataa agctcagctg cacctggcta
      781 gcccttcaac ccctcagagc gaagaacgaa cgctagaggg gcagctcggc cctgaagagc
      841 acccactgct ctcccaggag gacccagcgt gtacacgggg cagctcacag ccctccgtga
      901 ctccaggagg ggattccatt ccgtcttcgg gtgtttgagg gcacctggac aatgtgtcgc
      961 atccacagac acagaacgac ttttttttta tgatgaatat tcaggaactg tttgtatttg
     1021 cgcttgccta aatttcaagt gggtaaaaag catcagtcag aagcgtcaaa gacggtttta
     1081 taaaggctgc ccgtggaatt tttataagtc agtgactgct ctgagtcagg cggcccccac
     1141 ccagtgcttg ccatttggag tgctaattat tattattatt ttgctgattt gcctcatgaa
     1201 tgtgcacaca tgcgcactaa ttctggttcc atgcaaacat tccatgacag ccctttctgt
     1261 gtgtgacttt aaggtaccat ttctagcccc agttaaaact gtagaacctt gctgttcact
     1321 tgagctgtgg tttggctggc tttagccgtt gtcacttact acgctaatta acagccacac
     1381 ctccagcacc ttagagctag cggacagcat cctcttctcc tgaagccctt ggagcccagg
     1441 ctacaggcac gcagggaagg gtcttgctga ccaggcctcc gttttgaatc tctgggcctg
     1501 ctctgtaagt ttgagtcact gcccacagag tttgtgacct tgtccctgtc tggaaagagt
     1561 gtctgtggca aggctcttct cacgggtgta aggctcctta gggtgcaggc ctgcttgagg
     1621 cttgcgacaa gattcttcat catttctggt gttttcctga ggctgtccaa aaatcttcta
     1681 agtaaacact tcacatcaat caaccagaat tattgtcttc ttggtcgcta gcggctgtgt
     1741 gtgtgtgtgt gtgtaggggc ttgggggagg gactggtggt tgagtgtgct cgctgttctg
     1801 ccctggaggg tgctgagtca gtgcgtggaa agtaatgtga tcacttgacc ccgggactgt
     1861 gctttctctt gtaacagtgt ccaacccagg gtccaggaca gctgtggatg cagcccagca
     1921 caaaattgta ctgagggttt ctgtgtgatt attttcctcc ttgtaatttg atttaatggc
     1981 tctggagaat aaaatttata gactttgcgg atgtcaaagg gatgggcaca cctgctagaa
     2041 tgttccgtgc tgactaattc ttagtggatt tccccttggt cttttgagac aaggtctggg
     2101 agacagatgt gtatctacta agtacttttc tgagtaccaa acatgtaaca gactttcata
     2161 tgtaggctag aaacacagct cactcatcaa ggagggcaaa actgctttgg ctgtgtttta
     2221 ggaagcagac acatgcgcag aagagattgc atgctacctg gtgatcattg gggtgattga
     2281 aagtgagcat ggaagacagg cgtgttggac agattactgt tatggtggct gtatggacag
     2341 acacagtggg tgtgtggaca gcagtgtttc actgggagtg tggacagcag tgtttcactg
     2401 ggagtgtgga cagcagtgtt acactgggag tgtggacaga cacttacaac gggagtgctg
     2461 gaaggaacct ggtagtctca agtggatgtt ctaagattgt tggattctct tcccatttct
     2521 gctcttatca ggaggcccag gaagatcctt ctcagctttg aagtgtcctt ccccatggcc
     2581 tcctggggcc ctggagcagt gtggaatgag tttggacttg cagtcggcgt aggctggagt
     2641 tttaaaagtg cacgagggta taagttcgca tctgcatttc cctacaaaag tctgagccta
     2701 tggaccatga acttgctaaa cctggctgtg ctttgtttgt gcagacgtct gttttagctg
     2761 ttgccctata cacaaggaat ctggggcagc accggccttt acaataacat agctgctttg
     2821 gaagctgctt ctgtgtttcc tcatttagca ccaaaaacat ttgacaccca atacgtgcaa
     2881 acacttatgt aatgcacgca ggaaagtctg ggaatcgcag aaagttaatg catgtcgggg
     2941 agcgcgcatt gctttatgga aaggctgata gaatgcgatt attcaccaac catatatgtt
     3001 tactaaagtc attatcataa gcaaggccta ttaaatgctc tcctatgctc tccactaagt
     3061 gtctgatgac tgtttatttt tgtcggtgtg aatattaaag aaaagctaag cagaagcaat
     3121 cttaatatct tgttgattac gttccagaat aaaaacggca gaacattaag cctgcacgcc
     3181 atttgctata attactccga gtgggatgtt gctggagctg tcaggctgtg attgaggctc
     3241 actgatggtt ggcaccagct gcgtgcatta attgtctgca gcaagcgcac cccacattca
     3301 ctcgccattt ggagacacac gctttcctgt tcaccgcgct gtaaagcatc tcacgaatga
     3361 gtgaggaggg acgccgcctg ctcccagatt tagctgtcac ctcctgtcca cagagtccat
     3421 tcactcagcc ccacacagct ctgtggatgt gagctccctg tgcggccaag catctggagg
     3481 ggcactgggg tttatttcgg agaccttcgg cagcctgttt ctgataaggt ttaggggctc
     3541 tgaccgttta actcttccta ggcacaggga ttctaacatc acattagacg ttttaataag
     3601 gcagtccgac agtgaagcgc ctgttttctt ttccactcag cttccaagtg ggcttttcca
     3661 tagatattta atccttgcaa aatgtcggta tttccagaag caccgagaca catccatttt
     3721 cgttaaatga tgactcccag tttgcaagtt cattcggact gtgcccaggt gtttgtgtgg
     3781 gtgagtcact gtggcgtttg atgggcaggt acctcataga gcggcatgca ggttgtgcca
     3841 ttctgtcggg tacagctcta acgcttattt accacaggcg gaaccgagca aagattccaa
     3901 gtgttcattt atactttctg cctaatggga tgtctgtttt aaatcgtaag gcaacccaaa
     3961 taacgtgact gtggcttccc agtgcttatg ctgggaagta tctcagggtt attgtctggt
     4021 gactcctgaa gctccctagc tgctgtttgg agcccgaacc tgtcatgtct cctgaaagca
     4081 gtttccctag ggcacagagc ccaactgagt cctcacactg gcaaagagcc aggtgtgcac
     4141 gtgtgagtga gtgtgtgctc ctctgtcttg gcccctggac cttccagtgg gaggcgcagt
     4201 gttggcagag gtctgctggg tgctgtgaaa ctcccatgag ctctgtcact tcagaagccc
     4261 ctcctcggtt ctgagggcct tccataagtc ctcttttcct tgggctaagc aaagtcaatc
     4321 gtagttgctc aaacaccttt gaaagaatgt aattggttta agaagtgtgt gctgggttgg
     4381 ggatttagct cagtggtaga gcgcttgcct aggaagcgca aggccctggg ttcggtcccc
     4441 agctccgaaa aaaagaacca aaaaaaaaaa aaaaaagatt taaaaaagaa gtatgtgctt
     4501 cccaaagccg gagtgtgatg tatgtaccta taatcctgat acccaggctg cacacactgt
     4561 gagttccggg ccggcctgag ctacctagcc agactctgct tcgttttaca ttgtacttat
     4621 tttattgttg tttgaggtat tcaggaatgc atacgtataa atgcgtacgt gtccatcaat
     4681 ttccctccct cccaattctt cccctgccac caacattttt ctctcccaac atcatatcct
     4741 cttttagtgt aaaaaaccta ctaagcacac tgtttagacg tgtgtgggtg tggggatgtc
     4801 atctgccgga gcctgggcag cttctcctga agagagtgga cttctcccag cagccagcag
     4861 ttgccagtag ctcctcagct gggggagggg catcatgagc ccctcccctt ccatgttggg
     4921 attctggctg gcttggactg aaacacagac cgtgtcccaa aacacacaaa gccacggacc
     4981 atcctttcag agtctaatac caaccaagtc ttgattttat cgcacatggt ctcctggcag
     5041 acgtgatggc ctggtgctgc cccggggcct ggtcttccag ccaggtgctc accgccatgc
     5101 tctgtagctt gggtttggag gttggttttg tgaggtctgc ctagtgctgt ctcccagcgc
     5161 ctcagtatga gaagctacag caggtcccca aatctgagct gcgtttggtg agcaggcagg
     5221 caaactctca gagcagggct taccctgaat tcttatgtag tgaaatatca ttcaaataag
     5281 cccagcgtcc tgccgctcct gttttattta aggtggccct gtccaggcga gaaggagaat
     5341 agactattac agcattacct tttgaaatcc attcagagta gaatccctct gaaggcttga
     5401 aaggaagcga accgtgcttg tttgagtgtg agctaaagtg gagagtgttc attcgcacgg
     5461 aggactcggc acgcacacag agagagtgcc tttctctgtc aagtctttct accttggatg
     5521 gatcccgccg gcaggcattt agcctatcta aattagccca tcttttgtga ggaagttgat
     5581 gagaaaatgt cttcttgggt aggtagaaga tgctaggcat ctaaaacatc cgatcgtagc
     5641 ccctcaccag gctacgtcct cgtgtgcagt cacttagccc caccttccaa cgttgcacga
     5701 ggtgccctgc ccctgggtgt atttacaagg atctcagtga aaacgtgcat gggtctactt
     5761 aaatcgggta ttgaagcagc tacagctagc atgccgccat taaaactgga aggctctggg
     5821 gagttttaaa tagtctcgct tctcccagac ggcgtcatct ttgcacatcc tcggtgctta
     5881 tggacgcccc cttccccatt taggattgag tcctttgtcc tttactgaaa tgtctcatgg
     5941 gaaggggcac ccacgggtag tgctgaggat gtaggcagca aacacttcac atgtgcagat
     6001 cagcccttgg gaaatgtctg gggtcatggt ctcatccctg gagacagtgc cgtagaatga
     6061 gtaggtgtga agagaaagag gaggtcactg cagccacacc ggggctctgc gactctttaa
     6121 atgcttgtcc cgccccaggt aattaagact ataaaactcc atttaagtat tatctgagaa
     6181 aagcgcatgg ctaatgcctc tctctgattg gcagatgatt attttaaccg cccactggag
     6241 ttgataagta ctggtgtctc ttgatgctgt tcctgaaggc tgtatttgga gaactcagca
     6301 ctgattgagc agtatgaatg gagtgggtgg taaacatgtg tgtcttctcc aactaccacc
     6361 tcagcttaga ggtttttacc gagtcccgta agctactgtt gagggatcta gtcatttttc
     6421 attcagtaga gagaaaaaca ccgcctcgat tcagggcatt ctagaactcc ggtctcgcct
     6481 tgttctggag ttcgttgttc cctgtgtcta gccacactga aacagaccag cttcgccttt
     6541 ataccttgag tacctaggaa atcgggcaga tctataaaac agctattacc agatactaca
     6601 ccacagatat tacaggcttg tgatccaata ggaagatcta aaatttccat gcctttctgc
     6661 ataccaccat tatgcagaag ggaggaatac attagttggg tgactggaag tgtgaagtag
     6721 ggcggagtgc attaggtggg tgactgaagt gtcccgtagg cctgagtgca cacctttctg
     6781 cagaccactg tatgtagcag actggggtgc tgggggtgtg tgtggggggg cacgaacaga
     6841 agtacacagc aagccagaaa gctttaggtg ggtgactgga agtacacggc aagccagggt
     6901 gcactaggtg cgtatcgggc agtagccaca cagcaaagct ccacaaatgt aaacgagggc
     6961 ggccttgaat ttgctactgc atgttaggac gttttgcgat atgttaacgt atacaagctc
     7021 aagcaaagaa ccgtcgggaa actgtaagaa caacctgcat tcaccagagt caccgggtgt
     7081 tgcctgggaa atggctgaag aagcctgtgt acaacatact ggccaacaag cgacatttgt
     7141 tactccgtgg tttctactat aagctcctgc ctttaatgtc actcagtggt agactgtgac
     7201 ctggaaatat gagccaaata atttctttcc taagttgctt tgggtcagag tgttttgtca
     7261 cagcaacaga aaggaagcca gagcgctgtt taaccaataa acacattgtt agactcaggg
     7321 cgacaaactg gaaacatgtg atgacttcga taaacaacag aacggggcct caaaaaccta
     7381 aggtaaacat ggggaaagga gggaaggcaa aagccaaagc cacatggaac tcccagggca
     7441 gaatgagcag gacgaaatta aaagcgaact agacacggca gaagaagagc tcagtgagtc
     7501 cgaccatgtc taaagcaaac agcgcagagg agaaaacctt aaggaggcca tgactgggct
     7561 gtggaccgga atcatacctg actgaaggaa gtactgacca gagttttcca gaacagctac
     7621 aactaatgac ttactcttta aagacttaca ttgtgtattg tgggtggtgt cacggggaga
     7681 tttaaaagta cagatttata tcattttctc tcagcttttt tctcccccac agaacctact
     7741 gagaaagata ttgcagattg gcacctagaa aggaaaggag aggaaaggaa aaccgtatag
     7801 ctaataagca ggcagtaaag acggagcagg atggaagccg tgaaggacag atgaagatta
     7861 gaaacgggaa ggcataagcg agactgcgtt tcactaaata catattttta cacaatgcag
     7921 ttaaaaggaa gaagtcatca ggctgacgaa acagctcact taggtgctgt ttatagggat
     7981 gccttcctga ctaaggcaga acgggctgca gccagggatg ggggcgtgca tgccatgctg
     8041 caggtacaga aaagacactc ctggggacga agggtgacat gtgctcaggc aggagtaaca
     8101 aaccctcaga aaacgaaaag tgaaaaagga gaaggtggtg gggcggctga ggcaggagag
     8161 tcgctgtgag tttgaagcca gcccggtata catagtgaga ccatttcaaa gactgagaag
     8221 aggagaacac actactgaaa gttgctgttt atgtaacgcc aggtcgagac agcgtttgca
     8281 cacatgggaa acctgggctg ccctgtcagg ggctggccgc tgtcttcaca gcaccccaca
     8341 cggcacctga actcagacgg gcttgcgaga ccaagtgatg agccctgagt aaaaccccca
     8401 aaggtttaga attgaaacca cgcagaatat ctaccctgac tccagcagag tcagtgac
//
