LOCUS       XM_039095852            1543 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus AU RNA binding methylglutaconyl-CoA
            hydratase (Auh), transcript variant X3, mRNA.
ACCESSION   XM_039095852
VERSION     XM_039095852.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1543
                     /gene="Auh"
                     /note="AU RNA binding methylglutaconyl-CoA hydratase;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 70 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:361215"
                     /db_xref="RGD:1306087"
     CDS             43..780
                     /gene="Auh"
                     /codon_start=1
                     /product="methylglutaconyl-CoA hydratase, mitochondrial
                     isoform X3"
                     /protein_id="XP_038951780.1"
                     /db_xref="GeneID:361215"
                     /db_xref="RGD:1306087"
                     /translation="MAAAAAPGALGALSAGRVRLVAACCARLGSAAWARGTAPRRGYS
                     SEVKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLLKMLSKAVDALKSDKKVRT
                     IIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLAL
                     GGGLELALACDIRVAASSAKMGLVETKLAIIPGGGNHGQFETSLCAFEHMFTCPRASG
                     MQPDPECRRRWCFCCCPALAPVTRHQR"
ORIGIN      
        1 ggggcggagc ctggccgcgg gcgcccgctg taaacataca atatggcggc ggcggctgct
       61 cccggcgctc tgggcgcctt gagtgcgggt cgggtccgcc tggtggccgc gtgctgcgcg
      121 cgactaggct ctgcggcatg ggctaggggt accgccccga ggaggggcta cagctctgag
      181 gtgaaaaccg aggatgagct gcgcgtgcgg cacctggagg aggagaaccg aggcattgtg
      241 gtgcttggaa ttaacagagc ttatgggaaa aattcactca gtaaaaatct tctcaaaatg
      301 ttatcaaaag cggtggacgc attaaaatcg gataagaaag ttcggaccat tatcatcaga
      361 agcgaagtcc ctgggatatt ctgtgctggc gctgacctta aggaaagagc caagatgcat
      421 tccagtgaag tcggtccctt tgtctccaag atccgagcag tgatcaatga catcgctaac
      481 cttcctgtgc ccaccatcgc tgccatagat ggcctggccc taggaggggg cctggagctg
      541 gctttagcgt gtgacattcg agtagcagct tcttctgcaa aaatgggcct ggtggaaacg
      601 aagttggcga ttatccctgg tggagggaat cacggccagt ttgaaacttc actctgtgcg
      661 tttgaacaca tgttcacttg tcccagagcg tcaggtatgc agccagaccc tgagtgtagg
      721 aggagatggt gcttctgctg ctgcccagct ttggcccctg tgacaagaca ccagaggtag
      781 cagtttgtgg gagggaaggt tggtttgggc tcaagagttt gggagggctc agtccacttc
      841 tcttgttctg ctgtttgggt ctgtgtttga gctaagcatc agcgttcttc tagaaggctt
      901 gtggcgcaag ctcacctcga gctgagagag tgagagaaag ggggcggtgg ggagagacag
      961 aaaagggacc taggtccctc tcagtacccc accgaccagt tctatttcta ggtggcccct
     1021 cctcccacta gctccttgta gtgccttgct ggggtgtttt agggacattc tggctttaaa
     1081 ttatcctact ggcttggact ctaggctgac tcctctccat ctgccgctgt gtgtatgtat
     1141 gtgttgcggg ggcagggggc tttccttttt aaaagtcatt tacgaataca ctttgccatc
     1201 attgacaatg agatacttta tcggcccctc ccaaatctga atgtttcgct ggtatgattc
     1261 atagaatttg tagacattcc cattttgtga catcattctt tgagaaaggt atcgtttaag
     1321 gatgggtgca ttatcctata tagtacctga taagttactt gtttgctggt gagatgagct
     1381 gattcaagcc aaattagatt gtattgaagg caggtttatt ggagagctgt gcttgggcaa
     1441 gttccctggg ggccagggat tgaggaggag ggagagggaa gaaagagaga gaaagggtgc
     1501 tagaagcaga gagagaagag gaagaaaagg aggaggaagg gag
//
