LOCUS       NM_001398744            2520 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ataxin 7-like 2 (Atxn7l2), transcript variant 1,
            mRNA.
ACCESSION   NM_001398744 XM_006233200
VERSION     NM_001398744.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2520)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Dec 22, 2021 this sequence version replaced XM_006233200.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098000.1, SRR26643290.9628.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-183               JAXUCZ010000002.1  198535303-198535485 c
            184-249             JAXUCZ010000002.1  198533383-198533448 c
            250-354             JAXUCZ010000002.1  198532907-198533011 c
            355-565             JAXUCZ010000002.1  198532329-198532539 c
            566-852             JAXUCZ010000002.1  198531760-198532046 c
            853-935             JAXUCZ010000002.1  198531144-198531226 c
            936-1189            JAXUCZ010000002.1  198530536-198530789 c
            1190-1388           JAXUCZ010000002.1  198529631-198529829 c
            1389-1510           JAXUCZ010000002.1  198529420-198529541 c
            1511-2306           JAXUCZ010000002.1  198528190-198528985 c
            2307-2520           JAXUCZ010000002.1  198527066-198527279 c
FEATURES             Location/Qualifiers
     source          1..2520
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2520
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /note="ataxin 7-like 2"
                     /db_xref="GeneID:310781"
                     /db_xref="RGD:1307047"
     exon            1..183
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     CDS             57..2321
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ataxin-7-like protein 2"
                     /codon_start=1
                     /product="ataxin-7-like protein 2 isoform 1"
                     /protein_id="NP_001385673.1"
                     /db_xref="GeneID:310781"
                     /db_xref="RGD:1307047"
                     /translation="MAVRERAVAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGA
                     ELEESSKNTKKLDAMTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERR
                     HGPLSKLYARAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKGQGSRSRGHQP
                     PEKTQKDSLCLFVPVVNLEKMSSLPKPDGHGIRVAPPSAFLSQPGGLPKDSPGKVPTA
                     PSPKEPPGRENMELIPGEGTSHRAEGSPPEKEPSGARLPPKTHRKMARKEFDLNRQCG
                     VINPETKKICTRLLTCKIHSVHQRREVPGRAKDFDVLVAELKASSRKGESPKEKSPAR
                     KEPALERPSQEPPTAVQGAAAVAAPNNTFSSLSKQTYPYCTLPRSRASSESEVDDEGL
                     CGGDGDPGLFPFPLPRGGAQASSEESEEEGTSDDLHLSPDCHYATRPPRPQAFCTFGS
                     RLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPPSHLVSPSLSDPLSP
                     SSMGSCPRLPGPPPRPACPASVPPIKDSLVPSYPAGSPSVAAACSQAECMGGSQAITS
                     PLPANTPSPSFSKLPPSKASKSSKGKEGVEMEAPSRKRKLSPGPTTFKRTCILEPAGK
                     GKPSSCRGLSTKTKTALNLGLNGTVGPRMKRAGPLDCRGSPHSSPIPVKASQLENRGV
                     AGHPTKVLPTNCLSEEEVAKKRKNLATYCRPVKAKHCQAGVPPDGTCSVRRKKPGPAL
                     PFEEKCSTLKSKAH"
     exon            184..249
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            250..354
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            355..565
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            566..852
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            853..935
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1189
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1388
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            1389..1510
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            1511..2306
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
     exon            2307..2520
                     /gene="Atxn7l2"
                     /gene_synonym="RGD1307047"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggggaggg ggccgcgcgg cggcggcgcc ggggcgggcg cgcgtccgcg gcggtgatgg
       61 cggtgcgtga acgcgcggtg gcagcaatgg ccgctctgga gcggcgagtg ccgagtctcg
      121 atgacttcgc gggacagagc tggagctcgt gggtggagcg ggccgacctg cctgcggcag
      181 acggggctga actagaggaa agtagcaaaa acacgaagaa gctggacgcc atgaccctca
      241 ttaaagaaga catgtccatc ttcgggcact gccctgccca tgatgacttc tatttggttg
      301 tatgtaacca ctgcagccag gtggtgaagc ctcaagcctt ccagaaacat tgcgaaagaa
      361 gacatgggcc cctcagcaag ctttatgccc gggccccacc cccacctcca gcccctgcca
      421 gctctcagaa atgccatgta gtgaatgggc agggcccagc ttgtagagcc ccaggttcca
      481 ccaaaacctc ctccagggag aagggccagg ggtcccggag ccgtggccat cagcctcctg
      541 agaagaccca gaaggacagc ctctgccttt tcgtgcctgt ggtgaatctg gagaagatgt
      601 ccagtctccc gaagcctgat ggacatggaa tcagggtggc cccaccctct gctttcctca
      661 gtcagccagg aggcctcccc aaggactccc ctggaaaagt tcccacggcc ccctctccta
      721 aagaacctcc tggcagagag aacatggagc taatccctgg tgagggtacc agtcaccggg
      781 ccgaaggcag ccccccggag aaggagccca gtggagccag gcttcctcct aaaacccacc
      841 gaaagatggc tcgaaaagag ttcgacctca acaggcagtg cggggtcata aatccagaga
      901 ccaagaagat ctgtacacgc ctattgactt gcaagatcca ttcggtgcac cagcgcaggg
      961 aggtcccagg cagggccaag gactttgatg tgctagtggc tgaactgaag gccagctccc
     1021 gaaaaggaga gtctcccaag gagaagagcc cagcacgcaa agagccagct ctggaacgcc
     1081 cctcccagga gcctcccact gcagtccagg gtgcggctgc agtagctgcc cccaacaaca
     1141 ccttctcttc tctgtctaag cagacctatc catactgcac acttcccagg tcccgtgcct
     1201 cctctgagag tgaagtggat gatgaaggtc tctgtggtgg tgatggggat ccaggcctat
     1261 tccccttccc tttgccccgg ggtggggccc aggcctccag tgaggaaagt gaggaagagg
     1321 ggacatctga tgacctccac ctttcccctg actgccatta cgcaactcgg ccccctaggc
     1381 cacaggcatt ttgcacattt ggaagccgac tggtgagccc aggatgctac gtgtttagcc
     1441 gccggctgga ccggttttgc tcagcactca gctccatgct ggaacggcat ctcagctcac
     1501 acatgtggaa gaagatccca ccagcggctg agcctccatc ccatcttgtc agcccatcct
     1561 tatctgatcc cctgagtcca tcctctatgg gcagctgccc ccgacttcca ggcccacctc
     1621 cccggcctgc ctgcccagcc tctgttcctc ccatcaagga cagccttgtc cctagctatc
     1681 ctgcaggttc ccccagtgta gcagctgcct gtagccaggc agagtgcatg ggcggtagcc
     1741 aggctattac ctcaccgctg cctgccaaca ctccatctcc gtccttcagc aagctgccac
     1801 cttccaaggc cagcaagtca tccaaaggca aggagggggt ggagatggag gccccttctc
     1861 gaaagcggaa gttatccccc ggccctacca ctttcaaacg gacctgcatc ctggagcctg
     1921 ctggaaaagg caaaccctct agctgtcggg gtctctcaac caagactaaa acagccctga
     1981 acttggggct taatggaaca gtggggccac gaatgaaacg agcaggtccc ctggactgtc
     2041 ggggttcccc tcattcatcc cccataccag tcaaggcttc tcagctagaa aaccggggag
     2101 tggctggaca cccaactaag gtcctgccaa ccaactgtct ctccgaggag gaggtagcca
     2161 agaagcggaa gaacctggct acttactgcc ggccagtcaa ggccaagcac tgtcaggctg
     2221 gtgtccctcc tgatgggacc tgctctgtgc gccgcaagaa gccaggtcca gccctgccct
     2281 ttgaggagaa gtgctctaca ctgaagtcaa aagctcatta acgagaaagt gcctgcccac
     2341 tgcaacggag ccgtcagcac ctcctcccct ccagatctgg gccccaggct gctgccgctt
     2401 tttataactt tatattattt tttttaagaa aaaaaaaaaa cctctttaaa atacctcaag
     2461 actgtctccc tgttctgttg ctgctaagaa aatataaaga aacagaaaca tagaaaagga
//
