LOCUS       XM_039113161            3250 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ataxin 7-like 1 (Atxn7l1), transcript
            variant X1, mRNA.
ACCESSION   XM_039113161
VERSION     XM_039113161.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113161.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3250
                     /gene="Atxn7l1"
                     /note="ataxin 7-like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 1 long SRA read,
                     2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 6 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:362726"
                     /db_xref="RGD:1305730"
     CDS             46..3030
                     /gene="Atxn7l1"
                     /codon_start=1
                     /product="ataxin-7-like protein 1 isoform X1"
                     /protein_id="XP_038969089.1"
                     /db_xref="GeneID:362726"
                     /db_xref="RGD:1305730"
                     /translation="MTSERSRIPCLSAAAAEGTGKKQQEGTAMATLHRKVPSPEAFLG
                     KPWSSWIDAAKLHCSDNVDLEEAGKEGGKSREVMRLNKEDMHLFGHYPAHDDFYLVVC
                     SACNQVVKPQVFQSHCERRHSSMCRPSPSPAASPASNLRTSLAQAKTKACVSGHNAVS
                     STSKPFKTPKDNLLTSSSTQHTVFSAKGPRDKPWCCVREEHIEGPRGGWNQRIHGDSR
                     PGSVPVPVVSLEKIPNLVKADGANVKMNSTTTTAATSSSSSAVSTPPLIKPTLMSKSV
                     PPSPEKTLNGKGTLSATIDKKHPNGTKNSNKPYRRLSEREFDPNKHCGVLDPETKKPC
                     TRSLTCKTHSLSHRRAVPGRKKQFDLLLAEHKAKSREKEVKEHLLTSAREILPNPPGP
                     VPDALQGSSGSTVAEPKVASPPKSRPLNSVLPRPSSANSISSSASSNHSGYTPEPPLP
                     PAGGDLASRLSSDEGEMDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRR
                     WDRFRFALNSMVEKHLNSQMWKHRSPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTL
                     ESVAPRCPLNLAAQTPGPEGPEPGGMAADGGMEDIRKKRNGQDSFFFNKHLTLHQETP
                     TQYSLSARKIPPAADSPMPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSY
                     IMTSAMLSDAAFVASPDPRVLMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSP
                     SHKPSKTKTSKSSKVKDLSARSDESPSNKKRKPQSSISSSSLSLQASLSSPLSGPHKK
                     NCVLNASSALNSYQAAPPYNSLSVHNSNNGVSPLSAKLEPSGRTSLPSGPMDIVRQVG
                     AVGGSSGSCPLSVSSLALHAGDLSLASHNAVSSLPLSFDKSEGKKRKNSSPSSKACKI
                     TKMPGMNSVHKKNPPSLLAPVPDPVNSATSRQVRELLALPSSALGGRGSWAAPLLGQV
                     AQTGNTSMSPFSGFPVGSESSW"
ORIGIN      
        1 ccctcctccc cctctcagaa cactcaatgt cggaacgttc cgaagatgac gtcggagcgt
       61 tctcgaatcc cgtgtctctc ggctgctgct gccgaaggaa cagggaaaaa gcaacaagaa
      121 ggaacagcaa tggcgacact gcaccgcaaa gtgcccagtc cggaggcgtt tctgggcaaa
      181 ccctggtcct cctggatcga cgccgccaaa ttacactgct ccgacaatgt agatttagaa
      241 gaggctggaa aagagggtgg caaaagcagg gaggttatga ggcttaataa agaagatatg
      301 cacctatttg gccattatcc agcccatgat gacttctacc tggtcgtgtg cagtgcctgc
      361 aatcaggtgg tcaagccaca ggtcttccag tcgcactgcg agagaagaca cagttcaatg
      421 tgcaggcctt ctccctctcc agcagcgtct ccagcctcca atctccggac atcactagca
      481 caggcaaaga caaaagcctg tgtcagcggc cataacgctg tcagcagcac ctcaaagcca
      541 tttaaaacgc ccaaagacaa tctacttacc tccagcagca cacagcacac agtcttctct
      601 gcaaagggac caagggataa accatggtgc tgtgtcagag aggagcacat agagggcccg
      661 agaggcgggt ggaatcagag gatccatggg gacagccggc ctgggagcgt tccagttccc
      721 gtagtcagtt tagagaaaat ccctaaccta gtgaaggcag acggtgccaa tgtcaaaatg
      781 aactctacaa ccactaccgc agccacttcc tcctcctcct ctgccgtctc caccccacct
      841 ttaattaagc ccaccttgat gtccaagtcc gtgccacctt caccagagaa gaccttaaat
      901 ggcaagggga ctctgtcagc caccatagac aagaagcacc caaatggcac caaaaacagc
      961 aacaagcctt accggagact ttcagagaga gaatttgacc caaataaaca ctgtggagta
     1021 ttggatcccg agacaaagaa accttgcaca agatccctca cctgcaagac acactcgctg
     1081 agccatcgga gagcagtccc aggccggaaa aagcaatttg acctcctcct ggcggagcac
     1141 aaagccaagt cgcgggagaa agaagtgaaa gagcaccttc tgacttctgc tagggagata
     1201 cttccgaacc cgcctggacc cgtgcctgat gctctgcaag gatcttccgg gagcacggtg
     1261 gcagagccaa aagtagcatc cccaccaaaa tccaggccac tcaactctgt gcttcccaga
     1321 ccatcatctg cgaacagcat aagcagcagt gcatcttcaa accacagcgg ctacactcca
     1381 gagccccctc tacccccagc tggaggcgac cttgccagcc gactgtccag tgatgaaggg
     1441 gagatggacg gagccgacga atccgagaag ttagactgtc agttctccac gcaccacccc
     1501 agacctcttg cgttctgctc atttgggagt cgcctcatgg gacgaggata ctatgtgttt
     1561 gatagaagat gggatcgatt tcgcttcgca ctgaactcca tggtagaaaa acacttgaat
     1621 tcgcagatgt ggaagcacag aagcccgagc cacagggcat caggtccctc ccctctgttc
     1681 aggacttgcc taaccaatct gctgtcactg agcaacattg gggctgcctg ggtgtcaact
     1741 ctggagagcg tagcaccccg ctgccctctc aacctcgctg cccaaactcc aggccctgaa
     1801 gggcccgaac ctggagggat ggcagccgat gggggcatgg aagacattag gaagaaaagg
     1861 aacggccaag actctttttt ctttaacaag catttaactc tgcaccagga gacgccaaca
     1921 cagtattctc tttcagccag gaagatccct cctgcggcag atagccccat gccctcgcca
     1981 gcagcccaca tcaccacccc cgttccagca tccgttttgc agcctttcag caaccccagt
     2041 gctgtgtatc ttccttcagc tcccatcagc tcgagactca cctcttctta cataatgaca
     2101 tcagccatgc tctcagacgc agcttttgtg gcatcgccgg acccacgcgt cctcatgtcc
     2161 cacaccacag ctttccccca tgtggctgca accctgagca tcatggactc aaccttcaag
     2221 gccccatccg ccgtgtcccc gataccagct gtcattcctt ccccatccca caagccatcc
     2281 aaaaccaaaa ccagcaaatc ctcaaaagtg aaagacctgt ccgctcgtag cgacgaatct
     2341 ccaagtaaca aaaagaggaa gccgcagtcc tctatttcct cctcctcctt atccttgcag
     2401 gcttccctct cgtctccatt gtcagggcct cacaaaaaga actgcgttct gaatgccagt
     2461 tctgctttga actcctatca ggcagcccct ccctataaca gtttgtctgt gcacaactca
     2521 aataacgggg taagcccact cagtgccaag ctggagccct caggacggac ctcactgccc
     2581 agtggcccca tggacatagt gagacaggtg ggcgctgtgg gtggcagcag tggctcctgt
     2641 cccctctccg tgtcctccct tgcactccat gcaggggacc tctctctggc ctcacacaat
     2701 gctgtgtctt ctctgcccct ctcttttgac aaatcagaag gaaaaaagcg taagaattca
     2761 agtcctagta gcaaagcctg taagatcact aaaatgcctg gtatgaatag cgttcacaaa
     2821 aagaacccac ccagccttct tgcaccggtg cccgatcccg ttaacagcgc cacctctcgg
     2881 caggtaaggg agctcctggc actgccttca tcggctctgg ggggcagggg gagctgggca
     2941 gcgcccttgc ttggccaggt ggctcagaca ggcaacacaa gcatgtctcc tttttccggg
     3001 ttccccgtag gctccgagag ttcttggtag gactttgcta atctctatgg caagcacttt
     3061 acagtcatca cttcctttag tcctcacaac aacccaggac aaaatggcca ggggtacaaa
     3121 atggccgtca cttaacagat gggtaaaccg aggcacaaag agtctctgag ttcccccatt
     3181 ccttttgaat gtttcatacc ttgaggtttt atacgagatc tatttcatta aagagttgtg
     3241 ttgctaagaa
//
