LOCUS       XM_017599841            8948 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ataxin 7 (Atxn7), transcript variant
            X1, mRNA.
ACCESSION   XM_017599841
VERSION     XM_017599841.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017599841.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017599841.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8948
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8948
                     /gene="Atxn7"
                     /note="ataxin 7; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 17 ESTs, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 40 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361015"
                     /db_xref="RGD:1562692"
     CDS             1818..5027
                     /gene="Atxn7"
                     /codon_start=1
                     /product="ataxin-7 isoform X1"
                     /protein_id="XP_017455330.2"
                     /db_xref="GeneID:361015"
                     /db_xref="RGD:1562692"
                     /translation="MQTPGLTPGRHFHTCPWQLWFLGVRTVAASHSCSSYCAAACEPR
                     AKRWCRGSGGRAWATLSSLRRGRPAGSSIGGCVSDFALAPLRGLDVQTSPERAEREGP
                     ARGRRRQEAPPLKGAGRAPPLGRTRGRKEGAGLRAGPGCERPQGAERMSERAADDVRG
                     EPRRAAGGAAAARQQQQPQPLQLQRQHPPPRRPRPEDGGTGAATTSAAAMATVGERRP
                     LPSPEAMLGQSWNLWVEASKLPGKDGTELDESFKEFGKNREVMGLCREDMPIFGLCPA
                     HDDFYLVVCNDCNQVVKPQAFQSHCERRHSSSSKPPLAVPRTSVFSLFPSLSKSKAGG
                     AGGSSRPPGGGVLCASSSSKLLRLPKEKLQLRANMKPMHPMQQTKVPHGRVSMTPSVK
                     VEKMHPKMDGALLRSTVGPACPAPVSSAVKPGLSCPSIPKPTLPSPGQTLNGKGLPAM
                     PTLEKKPEDSSNNRKFLNKRLSEREFDPDIHCGVIDLDTKKPCTRSLTCKTHSLTQRR
                     AVQGRRKRFDVLLAEHKNRTREKELIRHPDCQQLPHPLRDPHPTPPRTLPEPHLPAES
                     KPSLASKPKPHTPSLPRPPGCPAQQGGSTPVDPPPGRESPHPPLPATEPASRLSSEEG
                     EGDDREEPVEKLDCHYSGRHPQPASFCTFGSRQIGRGYYVFDSRWNRLRCALNLMVEK
                     HLNAQLWKKIPPVPCSTSPVSARVPHRTNSVPTPQGGVSSLAAATVSAPAVVLPSSCV
                     SPNSKSAPAHGTTLNAQPAVSGAMDPVCSMQSRHVSASSSSPSTPSGLSSVPSSPLSR
                     KPQKLKPSKSVRPKEPSAVSTNCHSASSSTSGGLGKKRKNSSPLSVHSSSSSASSSSS
                     SHSVDFFRKNCVAHSGTPYLSTAPSSHSIGLNCVTNKTHSVSLRHEPVGRGPAGVSPA
                     ESIKRMSVMVNSGDSTLSLGPFVHQSSELPVSPHSHTPLDKLIGKKRKCSPGSSTVGS
                     SGSKPTKVARSPAMNSVHMKHTGTIPGPQGLMNNSLLHQDIFSPCLRTGIAAAAPQSP
                     DLKTKGTTLTADSTTGRNNPDIFEDKLHLCSALWTPRCL"
ORIGIN      
        1 ctgttctgga gatcatgctg taaaccaggc tggtcttaga actcagagag ccacctgcct
       61 ccgcctctcc agtgttggga ttaaaggcgt gtgccaccac acttagcctc atcgtcaatt
      121 ataaataata cactgactat atacaattgt taatattaaa acagtgcact aaaatacctg
      181 tggcagatcc ctgcatcttg gtgctcaata ctatcattga tgtgttttaa taactcatga
      241 tgctgagatt cagtccttat aattttaagg tcttttctgt tttagtatac tagataaaaa
      301 ctttgaaaac aagaattatc aaattgcaga aatcaaattg ccatattgat gtttattggt
      361 tggaagttcc attattgtga gagcagaagg accaagcaat gcctttagga agtgaggcca
      421 aacttcatgt tctccattct gcttttcttc ccattctcac cctatctgtc cagcagtcag
      481 aatgtctgtc ctcaagctac aagctcccaa gtgtagtatc taagtggttt cattctgagt
      541 atccaatagc tatggtcttg gtatctcaat ggtgggactt ctaagctttg cattaagtta
      601 acagttccaa ggactggtag aattcaaatt taatttatct taaatgtaga tttacaaaat
      661 ccaaactata agtaaaccat acgtattaca tcttgggaaa cattaatgca aatatttcaa
      721 tgattaatga aaaatttgaa attctgcatt ggagacacac aagctatgtt gaattagtaa
      781 tagtaatatg tgttttaacc ttgattttgc tcactgccac tcttatatta aagttaaaac
      841 ttacagaaat tagttttaag atttagaaat gttaaattta aaaaagtcat ctcaatcagt
      901 tttgattcat ccatcccttg gtataccagg actcccacag aatcccaaat tgacaaatgc
      961 tcaagtccct tctaaaaatg acacatatct tacacacatc tctcagtcta catcacatca
     1021 tctctggatt acttacagta ggtacataaa atgtaaattc tatgtaaata gttattacat
     1081 tgtatttagg gaaattttaa gaaatatgta aatgttcagt gtcgatacag tttttaaatt
     1141 acggaaaata tattccaaac gtcagttagt tgggtctgtg ggtgtgcagc ccgagcttgc
     1201 acaaagcaac tgtcctttga taagcactca gcaggttccc ttttgggatt tcttggtgtg
     1261 caatccagaa agtaagttag acatttcttc aacagagttg ttggcggtca catctgactt
     1321 tagatatttg ctattaccaa caaataatgc aagtacagaa aactcacctc ctcacctagt
     1381 cctagcttag aagacaccgg taagccaggc tagaaaagtg ctgctttact ggaatgagaa
     1441 cagagtaagg acatttccca aaggctcctt gtggtggtcc actcctatgc tttacttgtt
     1501 tgatgttcct cggaacatca cttaaataaa agttgtgtat gtgcttatgg gggaggggtg
     1561 agtttatgtg ctagtgctta atttagtgat caaaatctga ccagtgtctt ttgtatatcc
     1621 cctaagccat gggttctcat ccgattctag aaaagacaac cataaaaagt gagagactaa
     1681 caactcaagt ttaaagtgat acaccgattt tgtgcctcgc ttcttgctga agaaattcaa
     1741 gttccccggg cacagtgtga ccttcagttg tgggcactga agtacacgtg cctagcttgc
     1801 cacgcagcag gggcttgatg cagacacctg ggctaacacc tgggcggcat tttcacacct
     1861 gcccctggca gctttggttt ctcggcgtcc gcacagtggc ggcttcccat tcatgctcca
     1921 gctactgtgc agccgcctgc gagcccagag cgaagcgctg gtgtcggggc tccggaggaa
     1981 gggcctgggc gacgctttcg tcgctgcgcc ggggccgacc ggcaggctct tccataggtg
     2041 gctgcgtttc cgacttcgcc ctggctccac tccgggggct tgacgtgcaa acttcgccgg
     2101 agcgagcaga gagggaggga ccggcgaggg ggaggaggcg acaggaggcg cctccgctta
     2161 agggagccgg ccgggcgccg ccgctcggac ggacgcgcgg acggaaggaa ggagcggggc
     2221 tgcgggccgg gccgggatgc gagcgcccgc agggagcgga aagaatgtcg gagcgggccg
     2281 cggatgacgt caggggggag ccgcgccgcg cggcgggcgg agcagcggcc gcccggcagc
     2341 agcagcagcc acagcctctg cagctccagc ggcagcaccc gccgccgcgg cgcccacggc
     2401 cggaggacgg cggcaccggg gccgccacta cctcggccgc cgccatggcg acggtggggg
     2461 agcgcaggcc cctgcccagt cccgaagcga tgctgggaca gtcgtggaat ctgtgggtgg
     2521 aagcttccaa acttcctggg aaggatggga ccgaattgga tgaaagtttc aaggagtttg
     2581 ggaaaaaccg cgaagtcatg gggctctgtc gggaagatat gccgatcttt ggtctctgtc
     2641 ccgcacatga tgatttctac ctggtggtgt gtaacgactg caaccaagtt gtcaaaccac
     2701 aggcatttca gtctcactgt gagagaagac atagctcatc tagcaagcct cccttggctg
     2761 ttcctcgcac ttcagtattt tcgctcttcc catctctgtc caaaagcaaa gccggtggtg
     2821 ccggtggtag cagccggcct cctggtggag gggtcctgtg cgcatcctca agctccaagt
     2881 tactcagatt gcccaaagag aaacttcagc tcagggcgaa catgaagccc atgcatccca
     2941 tgcagcagac taaagtcccc catggaagag tcagcatgac accctctgtg aaggtggaaa
     3001 agatgcaccc gaagatggac ggcgcactac tgaggtccac agtagggcca gcctgtcccg
     3061 ctcctgtgag ctctgcagtc aagcctggcc ttagctgtcc ctccatacca aagccaacct
     3121 tgccttcacc tggacagact ctgaatggca aagggcttcc tgcaatgccc actctggaaa
     3181 agaaacctga agacagttct aataacagga agtttttaaa taagagatta tcagaaagag
     3241 agtttgatcc tgacatccac tgtggggtca ttgatctgga caccaagaag ccctgcacca
     3301 ggtctttgac ttgcaagaca cattccttaa cccagcggag agctgttcag ggcagaagaa
     3361 aacgatttga tgtgttatta gccgagcaca aaaacagaac cagggagaag gagctgattc
     3421 gccatcccga ctgtcagcaa ctaccacacc cactcaggga cccgcatcct acccctccta
     3481 ggactctgcc ggagccacac cttcctgcag agtcaaagcc ttccttagca agtaaaccga
     3541 aacctcacac ccctagtctt ccaaggcccc caggctgccc tgctcagcaa ggagggagta
     3601 cccctgtcga ccctcctcca ggccgtgagt ctccacaccc acccttgcct gccactgagc
     3661 cagcttctcg cttatccagt gaggagggtg aaggcgatga cagagaagag cctgttgaga
     3721 aactggactg tcactattca ggtcgtcacc ctcagccagc atcgttttgc acatttggga
     3781 gccggcagat cggaagaggt tattacgtgt ttgactccag gtggaaccgg cttcgctgtg
     3841 ccctcaacct catggtggag aagcatctga acgcacagct atggaagaaa atcccaccgg
     3901 tcccctgttc cacatcacct gtttctgctc gcgttcctca ccggacgaat tctgtgccga
     3961 caccacaagg tggggtcagc tccttggcag cagccaccgt ctctgcacct gcagttgtgt
     4021 tgccatcctc ctgcgtctcc ccaaatagca agtcggcacc agctcacgga accactctaa
     4081 atgcacagcc tgctgtttct ggggcaatgg atcctgtgtg cagtatgcaa tccagacatg
     4141 tatctgcttc atcctcatcc ccctccacac cctctggcct ctcgtcagtc ccctcttctc
     4201 ctctgtccag aaaacctcag aaattgaaac ctagcaagtc tgtacggccc aaggagcctt
     4261 ctgctgtcag cactaactgt cacagtgcca gcagcagtac cagtggtggc ttagggaaaa
     4321 aacgcaaaaa cagctcccca ctgtcagttc attcttcttc ctcttcggcc tcctcctcct
     4381 cctcttccca ttccgtggac ttttttagga aaaactgtgt ggctcactct gggactccat
     4441 acctgtcaac agcaccgtct tcccacagta tcggcctcaa ctgtgtgaca aataaaacac
     4501 actctgtgag cctccggcac gagccagtgg gacggggtcc ggccggtgtg agccctgcag
     4561 agtccatcaa gaggatgagt gtaatggtga acagtggcga ctccactctc tctcttggcc
     4621 cattcgtcca tcagtccagt gaactgcctg tcagccctca ctcacacact cctctagaca
     4681 aactcatagg caagaaaaga aagtgctccc cgggctctag caccgttggc agcagtggca
     4741 gcaaacctac aaaggtcgcc agatcgccag ccatgaacag cgtccacatg aagcacacag
     4801 gcaccatccc agggccacaa ggactgatga acaattccct cctccatcag gatatcttct
     4861 ctccttgctt acgaacagga attgcagcag cagcacccca gagccctgac ttaaaaacca
     4921 aaggcacgac cctgacagct gacagtacca cgggaaggaa taatccagac atttttgaag
     4981 acaagttaca cctctgctca gcactctgga ctccacgatg cctttgagtc tctttttcta
     5041 aactcctgtg gaccttcagg gtaacctctg gctgtttgac aaggattttc cgaagttgtg
     5101 tctgtagcag tgagtacaca taaaggacac tggatcaagt tcagccacca gattgctttc
     5161 tcagtgttaa aagtggtctg gactacttgc tacccatctg tgagaagttt ttgtttgtgt
     5221 tttgtttttg tttttttttt ttttttactt ggagcatatc atggagccac tcttgaagta
     5281 gattggctgg gcaaagaatg ttttggcaag agtgtttctg tagactctcc ctctttctct
     5341 gccagagtgt ttttgaacac attctcatct gtaagtcagt ctccagaggt aggcacctta
     5401 actggagact ggaggccttc caaagaaaga ggagcaagtt gcatcctgag taacctccta
     5461 gaggatatct ggctttagag ttttttaata gcagtgttca ggaatagaaa tctaacgttg
     5521 gttaatgcat tatgacgtag tagcccagcc cttttcaagt aatttgggat aagaagctta
     5581 tcaagttctt cagacttaag aactggcttg aagctgctga tgcctggata ttaagttaaa
     5641 gtatctcaga agcttagttt tcatggtaca aaagcatgtg tgataaaaag agagaaagaa
     5701 agaggaagaa tgaagaaaag aaaaaatgga gagagagaca aggaaaacta gtttggtgat
     5761 gagaagccaa ttgggacact ggacaattgg gaggtaaaca attttcaagt gaggcataat
     5821 ctgtagggtt tccaaagaga ctgacctctc ttgtcactgc tcattttgaa ccgtgtgtca
     5881 ggttggggtt attgtctcac tcggcattgc tttttaagat ctgccttttt aaaagttact
     5941 ataatgtcct taatttccca ggcatcactc ccacttccac tttgactgtt gtttggagaa
     6001 ctaagtgtaa gtttctgctt ccagtcctgc tgtcattgcg tctgcgtcac cgcttcctgt
     6061 cagcctttag aggtgcttat ttgaatgcag gtgggcttag gtggagaccc cccaagaaag
     6121 ggtggttgga gagccttgtg tgcatgccgt ggagagaagc agcttcgtga gggtacatac
     6181 tgtgtgctca cgcacacccg tctttctgtg acagtaatag ccatcttcct tcagtgagtt
     6241 ttaaagccct cttcacgatt tctcagcacc ccactcccaa agaatgctca atgtgttaaa
     6301 acattgcttg aaaagacgtc taccggagaa tttggggatg aactagggcc actgtaacag
     6361 ctcctgctca gaggactgag tcctcgggct taggaagagt acagcagcat ggccaacagg
     6421 acagccccca aggctcctag tcctgtcctg gccagtgtct gggcagagcg cagtcattgc
     6481 gttctttccc tacagttctt agattacaaa cttgaggttc agggaacttc agtcaacaac
     6541 ggggagaatg agtagtaaat acttggttac cagcctaata atgtgaattg ctacatttac
     6601 tcttattatg taagaacaca aagactttat gcagatactt taactataaa ttaatggaaa
     6661 tgttgaattt ttttaaggaa gggaaaacag aatcttattc acttattatg caatcagtcg
     6721 gtgaatgttt taaagctcat gctcgaggag ctctaggcgc agatgggcca gtgtggtaaa
     6781 gttaggaggt ccatctgatt gtctgtccta gtgctgcgga aggagcagag ggaaccctgg
     6841 ctcacggtca ttacttgctg acaagtgcaa tggggtgtgg ggtagattta ttttcagaac
     6901 cggggacttg atggttataa attaagatgc ttttagtggt tgagtttcta gacagatgct
     6961 gttccgaaag atgtgaatag gagccacggt aggaagttta ttcagagtaa agtagatagt
     7021 acttaggtta atgagcgcta tagcttgatc cttagacttc attatatctc caggaaacac
     7081 acagagcctc gggattagga aaagccattt tggattctgc ctgccacaaa cacatgttct
     7141 aaacagtgca ctaaagctta gactgttcaa atacttttat tttctctgac aacgacgttt
     7201 tatgatggtg aacaattaag accatttaaa ataagggagt ataatatttt tgaattaggt
     7261 taacttgcag aaccagattt gcagtgcttg gcttgattct aggtagactt tggtatcaat
     7321 ttaaaaccag gatacttttt tatattcttt ccaatagaat tcatgacagc ttctgcagtt
     7381 ttcttaaact acaaagaaat aaaagtgctg caatgatgaa caaagaatta taaaaaccta
     7441 cttttgtatc tttattttgg aatttcttgt ctattataaa tatggaagtg ccctatttca
     7501 gaagacatat tttgttaaaa atgaattgta catatttaaa tatgtatttt tgcacaggtc
     7561 tttttttctg atatcctgtt tttggtacaa ttgagatcat ctagtattta tttattaatt
     7621 aataaaaata aatacctttt tataatttga agtggttcac tgccaagcca gtagtttaga
     7681 acctgcctcc tgtacagtta cgggatgcct ctgctgtgtg ggagttgtgt ccattttagt
     7741 gtctccgggg tgggtgcaag cagatgaagt gggcacggca tctctcagtt gcctgatttc
     7801 cgaatagact acatggagca aagtgacaca ctgcttttct ttgtttagtt ttgtgtgtgt
     7861 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga gagagagaga
     7921 gagagagaga gagagagaga gagagcatgc cgctctgagc acacctgtgt tattagtatg
     7981 tgatgtggtt taaaactaat gaggaaacaa aacaaaacaa aactgaaagt gcctgaacct
     8041 ggtttaagct cagacagata tctttaaaga cttgaatgct gagttgaact tctggagttt
     8101 gctttttcca cctaaatatt atttcttaaa gtttaagggg agaagttaaa agccagcaag
     8161 gctggtaatt tttataaggt attttaaatt aagacctttt tggttcacag caatttcact
     8221 gcagtggact gcccagtgcc accaagggtt ataaactgtt gtcactcatg taatacagag
     8281 tttaagatag gatatttaaa atattttgta ttaaaaaata caagaagtac ctcggagaac
     8341 attgaaaaat gtttaatttg aaaaaaaata tgtaccttat aaaggcagct gtcttcctgt
     8401 aagagttctg ttgccaaggg atttcttaat gtctccattc tgtcctgggt tggggaaaag
     8461 ttaggctttg aaaaatgatt gttaaaagtt tcactgttta aaagagagta atcattttta
     8521 catcttaatg taagacattt taccttttca gatcacttaa atgagcacta catactgtca
     8581 gtgtgaatgc agggccttga aagaattttt ttttttttga gcttggttat taaagcaatc
     8641 tcctgtgtta aaatgtgtga atagtttgat acatgtgtac ccataatcaa gagcatctca
     8701 gctggacttt gtgttggctg ctgtatagaa atgaacaaat gtcaagggat agaaaattac
     8761 tttggatatt taaaagagaa gaaatatata gtctatttgt tttgtaacaa gtttctgtaa
     8821 ataaaataat ttatactatt tataagaaaa gttgtgtttt gctttatgag aaattagttt
     8881 gttgaacaaa cattgttact aaacgggcaa taaaactagg acttttcaat aaataaggtt
     8941 ggctgcac
//
